LOCUS       NM_145510               1985 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RAB interacting factor (Rabif), mRNA.
ACCESSION   NM_145510
VERSION     NM_145510.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Wu,L., Xu,D., Zhou,L., Xie,B., Yu,L., Yang,H., Huang,L., Ye,J.,
            Deng,H., Yuan,Y.A., Chen,S. and Li,P.
  TITLE     Rab8a-AS160-MSS4 regulatory circuit controls lipid droplet fusion
            and growth
  JOURNAL   Dev Cell 30 (4), 378-393 (2014)
   PUBMED   25158853
  REMARK    GeneRIF: MSS4 antagonizes Fsp27-mediated lipid droplet fusion
            activity through Rab8a.
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122771.10.
            
            On Jan 29, 2019 this sequence version replaced NM_145510.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC024808.1, AK155054.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-171               AC122771.10        179485-179655       c
            172-1985            AC122771.10        166405-168218       c
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 58.24 cM"
     gene            1..1985
                     /gene="Rabif"
                     /gene_synonym="E130318E12Rik; MSS4; RASGFR3"
                     /note="RAB interacting factor"
                     /db_xref="GeneID:98710"
                     /db_xref="MGI:MGI:2138605"
     exon            1..171
                     /gene="Rabif"
                     /gene_synonym="E130318E12Rik; MSS4; RASGFR3"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..417
                     /gene="Rabif"
                     /gene_synonym="E130318E12Rik; MSS4; RASGFR3"
                     /note="rab-interacting factor"
                     /codon_start=1
                     /product="guanine nucleotide exchange factor MSS4"
                     /protein_id="NP_663485.1"
                     /db_xref="CCDS:CCDS15310.1"
                     /db_xref="GeneID:98710"
                     /db_xref="MGI:MGI:2138605"
                     /translation="MEPCELQNELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLF
                     LPSMRKKPDLADGSNPDGDLLQEHWLVNDMFTFENVGFTKDVGNIKFLVCADCEIGPI
                     GWHCLDDKNSFYVALERVSHE"
     exon            172..1985
                     /gene="Rabif"
                     /gene_synonym="E130318E12Rik; MSS4; RASGFR3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1960..1965
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rabif"
                     /gene_synonym="E130318E12Rik; MSS4; RASGFR3"
                     /note="hexamer: AATAAA"
     polyA_site      1981
                     /gene="Rabif"
                     /gene_synonym="E130318E12Rik; MSS4; RASGFR3"
                     /note="major polyA site"
ORIGIN      
        1 agatcgcgcg tgcgccgttg tggctgatgg tgtggcggca cggcgatgga accctgcgag
       61 ctgcagaacg agctcgtgtc agccgagggc cggaaccgga aggcggtgct gtgccagcgt
      121 tgtggctctc gggtgctgca gccagggact gctcttttct ctcgccggca gctcttcctc
      181 ccctccatga gaaagaagcc agatctggcc gacggcagca atcctgatgg tgatctcctc
      241 caggaacact ggctggttaa tgacatgttc acctttgaga atgtgggctt caccaaggac
      301 gtgggcaaca tcaagtttct ggtctgtgca gactgtgaga ttggacccat tggctggcat
      361 tgcctagatg acaagaacag cttctatgtg gccttggaac gagtttccca tgagtaactg
      421 tggggctagg gacgtggctc caccctagct ataaaactct ccccacaaga accgacactg
      481 gacctggtgt gtcagctgtg ctggcagact tgttggtact aatataaatg acgagcactg
      541 gtgtttgccc ttgaacctgc agagggccag tcctgcttcc gtcaggcctc agagcatgcc
      601 tcccacttag tcgtctctgt cgcaccttgt cctaaagccc tttcccctgt tttggaacat
      661 ggaagaacat gcaagtactc taccagtgta gcctggtccc tggcactccg cctccatgcc
      721 ttgacccagg gctcgcttct tcctctcaac aagagcagca ttcatctttt tagccatgat
      781 gaaaggaaat aagatgttta ctcgctaatc gttgaaactc caccttttct cattctagaa
      841 gccaaatgta ataaggtgca catctgtaat cctagttttt gggaggtaga ggcaggagga
      901 tcaggagttc aaggccaacc tcagctacat agcctgggcc aggtgagaca ctgtctcata
      961 aaacataaag catacaagta tttgagagtt cattcgttgt atgtgaccta cttgtccaca
     1021 gtaatttatt ctttttaaaa gtaaaacatt tacaaatgtc agtatttaaa cctattcaga
     1081 aacacattac tttagacaca ttttcaattc tcttcttgag agcccttctt ctgggttgat
     1141 agtggcattt tatagtgaag atgaactcga cccttcttcc tcagatcttg gtcagctttc
     1201 tctttttatt agctcctagc tacttcagtc tctgcaccag gctctcttgg aatcagagta
     1261 gagagtatac ggtatacaag aggtcggcct cagccagata acacatgggt tactaggaaa
     1321 gactttttta gtggcactgc caccattcat taaatatagg ttgcaagggc cttgggattg
     1381 tggttcactt ggaccttgtc tataccgacc gagaatgcaa accttgtcca tggagatttc
     1441 tattgttacg ggcttggtgt caccttttct tattagccaa cttaagtctt caacgtgatt
     1501 tccagttgct ctgtcatttc tcatctggag tgacctggta gcttaaaagg actctgtata
     1561 accaggttca aatacattgc catcatccct tcttctgggg ggcctacact gagataagta
     1621 gacctcatta ttcctcataa tgtcagtgct tagcaagtgg gagcagatca agagttcagg
     1681 gttggcctcg gttacatatc gaattcaaag ccagcctgta ccacatgaga tcctgtttca
     1741 aatgaacaaa cacatgaaaa aatcaagtag gaactggaga aacgtctcac agttaagaat
     1801 gtttgctgct ctctcagagg acccgaattc agtacccagc tcccagcagg aggctcccag
     1861 ctgcctgtaa ctccagttca tgccccttct ggtccctgca gttgcctgcc catgaatggc
     1921 gcacatacag acaagcaggt gcacacatac aaataagtaa ataaaaattt tacggattaa
     1981 acctt
//
