LOCUS       NM_011231               1476 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Mus musculus Rab geranylgeranyl transferase, b subunit (Rabggtb),
            transcript variant 1, mRNA.
ACCESSION   NM_011231
VERSION     NM_011231.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Claessens,A., Weyn,C. and Merregaert,J.
  TITLE     The cytoplasmic domain of chondrolectin interacts with the
            beta-subunit of Rab geranylgeranyl transferase
  JOURNAL   Cell Mol Biol Lett 13 (2), 250-259 (2008)
   PUBMED   18161010
  REMARK    GeneRIF: The function of chodl was investigated by searching for
            its protein interaction partners.
REFERENCE   2  (bases 1 to 1476)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   3  (bases 1 to 1476)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 1476)
  AUTHORS   Adams,D.J., van der Weyden,L., Kovacic,A., Lovicu,F.J.,
            Copeland,N.G., Gilbert,D.J., Jenkins,N.A., Ioannou,P.A. and
            Morris,B.J.
  TITLE     Chromosome localization and characterization of the mouse and human
            zinc finger protein 265 gene
  JOURNAL   Cytogenet Cell Genet 88 (1-2), 68-73 (2000)
   PUBMED   10773668
REFERENCE   5  (bases 1 to 1476)
  AUTHORS   Alexandrov,K., Simon,I., Yurchenko,V., Iakovenko,A., Rostkova,E.,
            Scheidig,A.J. and Goody,R.S.
  TITLE     Characterization of the ternary complex between Rab7, REP-1 and Rab
            geranylgeranyl transferase
  JOURNAL   Eur J Biochem 265 (1), 160-170 (1999)
   PUBMED   10491170
REFERENCE   6  (bases 1 to 1476)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   7  (bases 1 to 1476)
  AUTHORS   Chinpaisal,C., Lee,C.H. and Wei,L.N.
  TITLE     Studies of the mouse Rab geranylgeranyl transferase beta subunit:
            gene structure, expression and regulation
  JOURNAL   Gene 184 (2), 237-243 (1997)
   PUBMED   9031634
REFERENCE   8  (bases 1 to 1476)
  AUTHORS   Wei,L.N., Lee,C.H., Chinpaisal,C., Copeland,N.G., Gilbert,D.J.,
            Jenkins,N.A. and Hsu,Y.C.
  TITLE     Studies of cloning, chromosomal mapping, and embryonic expression
            of the mouse Rab geranylgeranyl transferase beta subunit
  JOURNAL   Cell Growth Differ 6 (5), 607-614 (1995)
   PUBMED   7544156
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX512972.1, BC132473.1 and AK160162.1.
            
            On Jul 22, 2009 this sequence version replaced NM_011231.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC021335.1, U12922.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               BX512972.1         1-122
            123-1193            BC132473.1         1-1071
            1194-1476           AK160162.1         1043-1325
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 78.76 cM"
     gene            1..1476
                     /gene="Rabggtb"
                     /note="Rab geranylgeranyl transferase, b subunit"
                     /db_xref="GeneID:19352"
                     /db_xref="MGI:MGI:99537"
     exon            1..279
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            280..477
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            478..583
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            584..636
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            637..747
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            748..873
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1023
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1476
                     /gene="Rabggtb"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1291..1296
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rabggtb"
                     /note="hexamer: AATAAA"
     polyA_site      1311
                     /gene="Rabggtb"
     regulatory      1426..1431
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rabggtb"
                     /note="hexamer: AATAAA"
     polyA_site      1476
                     /gene="Rabggtb"
                     /note="major polyA site"
ORIGIN      
        1 gtcaatgatg agctggcatg tattctgaat ctaaagttga ttataaacca ctttagctct
       61 agaattactc tgagacctga aagaaaaaaa gtactgagat ctggctatgt gtgagtctga
      121 gatgtcacga tttccggatg gtgaatggga tctctgcttt tttcttggaa gggcacacag
      181 cagaaagacg ttactatcaa gtcagatgcg cctgacaccc tgttgctgga gaagcatgcc
      241 gattatattg cttcctatgg ctcaaagaaa gatgattatg aatactgcat gtctgaatac
      301 ctgagaatga gcggcgtcta ttggggcctg actgtgatgg acctcatggg acagcttcat
      361 cgcatgaacc gagaagaaat cctggtgttt atcaagtcgt gccagcatga gtgtggggga
      421 ataagtgcta gcattgggca cgacccccac cttctgtaca cgctcagtgc tgtccagatt
      481 cttactctgt atgacagtgt tcatgttatc aacgtagata aggtcgtggc ctatgttcag
      541 agcctacaga aagaagatgg ctcctttgct ggagacattt ggggagaaat tgatacaaga
      601 ttctcatttt gtgcggtggc aactttggct cttttgggca agcttgatgc tattaatgtg
      661 gaaaaggcga ttgagtttgt tttgtcctgc atgaactttg atggtggatt tgggtgcaga
      721 ccaggctctg aatctcacgc tgggcagatc tattgttgca caggattcct ggccataact
      781 agtcagttgc accaagtgaa ctccgaccta cttggttggt ggctttgtga gcggcagttg
      841 ccctcaggcg gactcaatgg aagacccgag aagttaccag atgtgtgcta ttcatggtgg
      901 gtgttggcct ccctaaagat catcgggaga cttcattgga ttgacagaga aaagcttcga
      961 agtttcatct tagcgtgtca agatgaagag acgggaggat ttgcagacag accaggagat
     1021 atggtggatc cctttcatac cttatttggc attgctgggt tgtcacttct gggagaagag
     1081 cagatcaagc ctgttagccc tgtcttctgt atgccagaag aggtgcttca gagggtgaat
     1141 gtccagcctg agctagtgag ctagtcagat gggagagatg ctgtagtgtg caatatgaat
     1201 tactgctgta tttgaagtgt ttatcaaacc tagacgtgac ttaatatttt gtatatcata
     1261 tgttaatgat aaattatata agtattgtaa aataaatatg ttgtatttag atctttagtc
     1321 ttctgagtcc agtttttgtt agtcctattt agagctggta tttaactgat gcctccccgt
     1381 gtcctattgt cgtgtaacaa tcaatgatgg aaagtgattt ctgttaataa aactgatgag
     1441 tgaaactcat aatttaaata aaggtcaaaa tcagtg
//
