LOCUS       NM_176971               3797 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus RAB9B, member RAS oncogene family (Rab9b), mRNA.
ACCESSION   NM_176971
VERSION     NM_176971.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Zhang,Z., Wang,S., Shen,T., Chen,J. and Ding,J.
  TITLE     Crystal structure of the Rab9A-RUTBC2 RBD complex reveals the
            molecular basis for the binding specificity of Rab9A with RUTBC2
  JOURNAL   Structure 22 (10), 1408-1420 (2014)
   PUBMED   25220469
REFERENCE   2  (bases 1 to 3797)
  AUTHORS   Itoh,T., Satoh,M., Kanno,E. and Fukuda,M.
  TITLE     Screening for target Rabs of TBC (Tre-2/Bub2/Cdc16)
            domain-containing proteins based on their Rab-binding activity
  JOURNAL   Genes Cells 11 (9), 1023-1037 (2006)
   PUBMED   16923123
REFERENCE   3  (bases 1 to 3797)
  AUTHORS   Fukuda,M.
  TITLE     Distinct Rab binding specificity of Rim1, Rim2, rabphilin, and
            Noc2. Identification of a critical determinant of Rab3A/Rab27A
            recognition by Rim2
  JOURNAL   J Biol Chem 278 (17), 15373-15380 (2003)
   PUBMED   12578829
REFERENCE   4  (bases 1 to 3797)
  AUTHORS   Fukuda,M., Kuroda,T.S. and Mikoshiba,K.
  TITLE     Slac2-a/melanophilin, the missing link between Rab27 and myosin Va:
            implications of a tripartite protein complex for melanosome
            transport
  JOURNAL   J Biol Chem 277 (14), 12432-12436 (2002)
   PUBMED   11856727
REFERENCE   5  (bases 1 to 3797)
  AUTHORS   Kuroda,T.S., Fukuda,M., Ariga,H. and Mikoshiba,K.
  TITLE     The Slp homology domain of synaptotagmin-like proteins 1-4 and
            Slac2 functions as a novel Rab27A binding domain
  JOURNAL   J Biol Chem 277 (11), 9212-9218 (2002)
   PUBMED   11773082
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY122769.1, AK034442.1 and AW047392.1.
            
            On Jul 28, 2018 this sequence version replaced NM_176971.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.2372762.1, AK034442.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                BY122769.1         2-17
            17-3777             AK034442.1         2-3762
            3778-3797           AW047392.1         1-20                c
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 59.1 cM"
     gene            1..3797
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /note="RAB9B, member RAS oncogene family"
                     /db_xref="GeneID:319642"
                     /db_xref="MGI:MGI:2442454"
     exon            1..164
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            165..236
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            237..3781
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..884
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /codon_start=1
                     /product="ras-related protein Rab-9B"
                     /protein_id="NP_795945.1"
                     /db_xref="CCDS:CCDS30425.1"
                     /db_xref="GeneID:319642"
                     /db_xref="MGI:MGI:2442454"
                     /translation="MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEF
                     LNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQ
                     KEFIYYADVKDPDHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGNYPYLETSAKDDTN
                     VTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKASSSCC"
     regulatory      2151..2156
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2189
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /note="major polyA site"
     regulatory      3753..3758
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3781
                     /gene="Rab9b"
                     /gene_synonym="9330195C02Rik"
ORIGIN      
        1 agcagctgtc aggccaccga ggtccaagct gcacttgctg ccccactgag gacgaggtgg
       61 cagcgcgagc cgtgacccgg tcgccgagga gccaggctag aggcacgcag agctgacctg
      121 cctggcgtct gtaaccctgt cctctctcct ccccattgtg ttggaatcct aataaaatat
      181 aaagcaacag aaaggacaaa ggagaaggtt gaaattgtga aaagaaacct aactaggttt
      241 tttttgtttg cagacttctc cctgtttggt gctgcaacat gagtgggaaa tcccttctct
      301 taaaggtcat cctcttgggt gatggaggag ttgggaaaag ctcacttatg aaccgttatg
      361 taaccaacaa gttcgactcc caggcttttc acacgatagg ggtagagttc ttaaatcgag
      421 atctggaggt agatggacgc tttgtgaccc tccagatctg ggacactgcg gggcaggaac
      481 gtttcaagag ccttagaaca ccattctaca ggggagccga ctgctgcctg ctaaccttca
      541 gtgtggatga ccggcagagc tttgagaacc ttggtaactg gcaaaaagag ttcatctact
      601 atgcagatgt aaaggaccca gatcatttcc cctttgtggt tctgggtaac aaggtagaca
      661 aagaggatag gcaagtaacg actgaggagg cacaagcctg gtgcatggag aatggaaatt
      721 acccttatct agaaacaagt gccaaagatg atactaatgt gacagtggcc tttgaagaag
      781 ctgttaggca ggtgttagct gtagaggaac agctggaaca ttgtatgtta ggtcacacca
      841 ttgatttgaa cagtggctcc aaagcaagtt cttcttgttg ttagaggtag ggactcttga
      901 caagtgtgca ataagttggt cagtctgttg tgtaaaaacg actgtgctct ttggtagtat
      961 gaacacacac acacatacac acacacacac atgcacacac acacacacac gtacatgaaa
     1021 gcatgctcac acaggcaatt gcatacacac aggtacacac agacacatac atgaaagtac
     1081 gtgcacgcac gtgattgcat acacacacac atacacacac acacacacac acacacacac
     1141 acacacatga aagtaaaaga taatgttctg tttttgaaac agaacctttc aaattgaagt
     1201 tgtaaagcgg ttttttaaaa agctttattg agccaagtgt attttgcgta attcctgcta
     1261 ttttcccttc ttgtgtggct caggacatat cagaaagttt tagtcctgag agatttaagt
     1321 atttttaatc acagtttaaa cctagaaccc agccgcatga aggagtgaaa gagcttaaag
     1381 tgttccatta accagctagc aaaggccacc aactcttgcc aagtagttta tgtcatttct
     1441 accaaaggga aaattaggat tctgagctgt gttacagaaa ataatggaag caagaatttc
     1501 taaacatgta ttagaaaaag gtggtggtga ttaagaatat agatgtataa aaacacactg
     1561 acatgttcaa atccttacgt atggtttact ctcttatgaa cttaagaaaa atcatttcta
     1621 taagaattac tctaatgaca ctggaggttg gttctaatcc atgtgagtca caggacacta
     1681 gtgaatggat tacgcttaaa tatgccaacc acatttgcaa atacatggtt ggcctgcttt
     1741 tccttcatta agtctactgc tgctgcatag agatgttgct tccttgacaa cttatcaatt
     1801 tagtgatgct gcttagtatg tggcttcggg tgcagtgctc tctgcctaca ttttacacag
     1861 tcctataatt caccatgctg gctcatgcag aaggcctcag aaaggattgg agagtaatgg
     1921 gcttttctca caggttcctt aactcagttg tttgttagat ctcagatctc agatctcaga
     1981 aggatctgat tcttagaatg tcccaccaga tgttcagctg gccaaactag gacattaaaa
     2041 ctggcaaaag agcaggtttt ttttttttta aactttgtgt taggatgaat ttctcgtaat
     2101 taaatttgtt caaatgtgga atagattgcc ttaattgtga actccctccc aataaaagta
     2161 gtcactggct gactatttgt taaaaagaat tactgaactg gctacatgtt tggtataagg
     2221 tttcttcatg ctttcgttct gaatataaac tatgtcagtg ccatgtcctg gttggactta
     2281 catgaaagta aaggttaaga ccatagagag ggccttcaaa aatcctcaag ccattctggg
     2341 attagccttt aacagcaact attatttaaa aatatatccc aaaggtacaa tgttcatacc
     2401 aaaaatggtt tgacaatttt tgaataccat gactgccaat tgtatatact atattctgag
     2461 tgtgtcatct gtttcttttt ttttttaaat tggttgatct gcatggattt taatctgtgc
     2521 tttaaaacat gtatgaacca atgtaaagag ggacagttaa ttagttaagg ccctccaaag
     2581 agatttaggc ctgggattgg gtgggagcat tcacaggaat acagcctaga attctccatt
     2641 gtagccacac atggaatcag ccttacatgt gggaccttac gtgctttaag aactctggta
     2701 cttttggcca catagacaaa agtaggacag tatttatttc aactcagact tactcaatat
     2761 ttctaattat tgtatagtcc tgaccctatt gtccaattaa tttagatgcc agaagtcaaa
     2821 gccagaactg ggaccccaca actcttaaat attggttcct atcttgccta tgcctatagc
     2881 cagccacact ggtttcaatg ttctacagtc attttgctac aatcatgtta gggtgaaaat
     2941 ctgtacgtca gaactaataa atggtaatta ttttttaagt gcatgagacc tggggccttc
     3001 tctttctact tgcactctgc ttataatagt ttctatctgt agatctcagg ccttcataaa
     3061 gatctccatc agctcacaca aagtatttgt ctctgtagag tggcatgtgg tcatgtgagt
     3121 aaaaataaaa gtatgtgagg attcagttca tagacatgct gtccattgag acaagtgttc
     3181 attttattag caggcatatc gaagcccctt tcttcttagc catacttttt tttctaccaa
     3241 attacttcac aatatcaagc acttaacaat atgtgacaaa acagtggcat tttagtgagt
     3301 aacactcagt gggtgttgac atagtttggg taagatttaa aaacaccaaa agctgctatc
     3361 cttggtacca agaactgtgc atatgtgttc agaaatagac tgtatatcta gaatgtgcaa
     3421 tgaaatattt tcaataggtg tttttaatga acactagatg tttgggatca atgtatttct
     3481 aattagaagt atactggttt tcaatagtcc attaaaatat catataaaat atttatttag
     3541 tttattgcca tgtattgact ttcaaggggc ttcagattcc atatgtcttc agcggattga
     3601 tgaatttcag gtgtctttgt gcctgccttg gccatctcta ctttattctg aggtattcca
     3661 ccatcctctt gttgcaggtg ctgctaaaaa tctcaaaaaa tgtggataag atattttgtt
     3721 ccagttgttt aaaaatcatc tgtgtcaaag taaataaaaa gtgcattttg aataaccagc
     3781 aaaaaaaaaa aaaaaaa
//
