LOCUS       NM_026124               1065 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus RAB5 interacting factor (Rab5if), mRNA.
ACCESSION   NM_026124
VERSION     NM_026124.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Moutaoufik,M.T., Malty,R., Amin,S., Zhang,Q., Phanse,S.,
            Gagarinova,A., Zilocchi,M., Hoell,L., Minic,Z., Gagarinova,M.,
            Aoki,H., Stockwell,J., Jessulat,M., Goebels,F., Broderick,K.,
            Scott,N.E., Vlasblom,J., Musso,G., Prasad,B., Lamantea,E.,
            Garavaglia,B., Rajput,A., Murayama,K., Okazaki,Y., Foster,L.J.,
            Bader,G.D., Cayabyab,F.S. and Babu,M.
  TITLE     Rewiring of the Human Mitochondrial Interactome during Neuronal
            Reprogramming Reveals Regulators of the Respirasome and
            Neurogenesis
  JOURNAL   iScience 19, 1114-1132 (2019)
   PUBMED   31536960
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY165552.1, AK003568.1 and AW493966.1.
            
            On Nov 22, 2008 this sequence version replaced NM_026124.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019445.1, AK003568.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6                 BY165552.1         1-6
            7-1047              AK003568.1         2-1042
            1048-1065           AW493966.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 77.89 cM"
     gene            1..1065
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /note="RAB5 interacting factor"
                     /db_xref="GeneID:67388"
                     /db_xref="MGI:MGI:1914638"
     exon            1..296
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /inference="alignment:Splign:2.1.0"
     exon            297..400
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /inference="alignment:Splign:2.1.0"
     exon            401..530
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /inference="alignment:Splign:2.1.0"
     exon            531..1051
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1029..1034
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /note="hexamer: AATAAA"
     regulatory      1033..1038
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /note="hexamer: AACAAA"
     polyA_site      1047
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
     polyA_site      1051
                     /gene="Rab5if"
                     /gene_synonym="1110008F13Rik; RCAF1; RIP5"
                     /note="major polyA site"
ORIGIN      
        1 tgctccgtgg agcttagcga gccggccgct gggcagagcg agcagagcct cggcgggcca
       61 ctgtccctcg ctgcccggac taccgctgcc gccccgcgcg ccgagtcccg cggtcccaga
      121 ccccgactcc cttcggcttg gcccgcgcgc cccacgcccg gctcgggcgg cgcgacggga
      181 ggatgagcgg cgggcggcgg aaggaggagc cgcctcagcc gcagctggcc aacggggccc
      241 tcaaggtgtc cgtgtggagc aaggtgctgc ggagcgacgc ggcctgggac gacaaggatg
      301 aatttttaga tgtgatctac tggttccgac agatcatcgc tctggttttg ggtgtcattt
      361 ggggcgtttt gcccttgcga ggcttcttgg gaatagcagg attctgcctg atcaatgcag
      421 gagttctgta tctctacttc agtaactacc tacaaatcga cgaggaagaa tatgggggca
      481 cgtgggagct caccaaagaa ggctttatga catcatttgc cttgttcatg gtcatttgga
      541 tcatctttta cactgccatc cactatgact gatggcattt gctcccgtgt cttctgtcca
      601 gtccgaagga cccttttact acagcacagg tacatgccaa ttggggcact cctgccgcgt
      661 ggaaccggga agacccacgt ctcctgaact tagaatcaac gtgttggaca tcagtatttt
      721 ccgcaagggt tgtgaaactt ttcaaagaac catccgcctt tggggaagca tttctgaatt
      781 tgtccattgt caactgtttt tccttggata ccatcatgta acagctgttt gccgagtgga
      841 gctgctgttg aatttgatgc gcctctggat ccggatgaaa cattgtcttc cttggttctc
      901 cgtcaggtgt acagttttta aaccatcact gcatctcaag tcttctgaaa acaccatgtg
      961 tgtggtccat ggtacaatac aagcagccat ctaataagtc tccattgtag gatgttttca
     1021 gaaacttgaa taaacaaatc tttaactgaa aaaaaaaaaa aaaaa
//
