LOCUS       NM_001081651             735 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus RAB42, member RAS oncogene family (Rab42), mRNA.
ACCESSION   NM_001081651 XM_144080 XM_911873 XM_973846
VERSION     NM_001081651.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Marubashi,S. and Fukuda,M.
  TITLE     Rab7B/42 Is Functionally Involved in Protein Degradation on
            Melanosomes in Keratinocytes
  JOURNAL   Cell Struct Funct 45 (1), 45-55 (2020)
   PUBMED   32037382
  REMARK    GeneRIF: Rab7B/42 Is Functionally Involved in Protein Degradation
            on Melanosomes in Keratinocytes.
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Itoh,T., Satoh,M., Kanno,E. and Fukuda,M.
  TITLE     Screening for target Rabs of TBC (Tre-2/Bub2/Cdc16)
            domain-containing proteins based on their Rab-binding activity
  JOURNAL   Genes Cells 11 (9), 1023-1037 (2006)
   PUBMED   16923123
REFERENCE   3  (bases 1 to 735)
  AUTHORS   Fukuda,M.
  TITLE     Distinct Rab binding specificity of Rim1, Rim2, rabphilin, and
            Noc2. Identification of a critical determinant of Rab3A/Rab27A
            recognition by Rim2
  JOURNAL   J Biol Chem 278 (17), 15373-15380 (2003)
   PUBMED   12578829
REFERENCE   4  (bases 1 to 735)
  AUTHORS   Fukuda,M., Kuroda,T.S. and Mikoshiba,K.
  TITLE     Slac2-a/melanophilin, the missing link between Rab27 and myosin Va:
            implications of a tripartite protein complex for melanosome
            transport
  JOURNAL   J Biol Chem 277 (14), 12432-12436 (2002)
   PUBMED   11856727
REFERENCE   5  (bases 1 to 735)
  AUTHORS   Kuroda,T.S., Fukuda,M., Ariga,H. and Mikoshiba,K.
  TITLE     The Slp homology domain of synaptotagmin-like proteins 1-4 and
            Slac2 functions as a novel Rab27A binding domain
  JOURNAL   J Biol Chem 277 (11), 9212-9218 (2002)
   PUBMED   11773082
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670276.13.
            
            On or before Feb 24, 2007 this sequence version replaced
            XM_911873.2, XM_144080.4, XM_973846.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660815.384211.1, BC132060.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-246               AL670276.13        27658-27903         c
            247-735             AL670276.13        26741-27229         c
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 65.14 cM"
     gene            1..735
                     /gene="Rab42"
                     /gene_synonym="9530096D07Rik; Rab42-ps"
                     /note="RAB42, member RAS oncogene family"
                     /db_xref="GeneID:242681"
                     /db_xref="MGI:MGI:2441753"
     exon            1..246
                     /gene="Rab42"
                     /gene_synonym="9530096D07Rik; Rab42-ps"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..667
                     /gene="Rab42"
                     /gene_synonym="9530096D07Rik; Rab42-ps"
                     /note="RAB42, member RAS oncogene family, pseudogene;
                     putative Ras-related protein Rab-42"
                     /codon_start=1
                     /product="ras-related protein Rab-42"
                     /protein_id="NP_001075120.1"
                     /db_xref="CCDS:CCDS38898.1"
                     /db_xref="GeneID:242681"
                     /db_xref="MGI:MGI:2441753"
                     /translation="MEAAGCSYQFRIALLGDAGVGKTSLLRCYVAGARGAAEPDPEPT
                     VGVEFYSRALQLPAGLRVKLQLWDTAGQECFRCITRSFYRNMVGVLLVFDVTNRESFE
                     HIQAWHQEVVSTQGPDKVVFLLVGHKCDLNTRCVSSQEAEELAASLGMGFMETSAKSN
                     CNVDLAFDTVTSAIEQALQQGDIKLDKDWAGVRLLHRSPNPRSSSRKQDSGTCQC"
     exon            247..735
                     /gene="Rab42"
                     /gene_synonym="9530096D07Rik; Rab42-ps"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcggggagc ccagatccta tggaggcggc cggctgcagc taccaatttc ggatcgcgct
       61 gctcggggac gcaggggtgg gcaagacgtc actgctacgg tgttacgtgg cgggcgcgcg
      121 gggggcggcg gagccggatc ccgaacccac tgtaggcgtg gagttctaca gccgcgcgct
      181 gcaactaccc gctgggctgc gagtcaaact gcagctctgg gacaccgcag gccaagagtg
      241 cttcaggtgc atcaccaggt ctttttaccg gaacatggtg ggcgttctgt tggtctttga
      301 tgtgacgaac agagagtcct ttgaacacat ccaagcctgg caccaggagg tcgtatccac
      361 tcagggccct gacaaggtgg tcttcttact ggttggccac aagtgtgacc tgaacacccg
      421 atgcgtatcc tctcaggaag cagaggaact tgctgcctct ctgggcatgg gcttcatgga
      481 gacctcggcc aaaagcaact gcaatgtcga cctggccttt gacactgtca ccagcgccat
      541 cgaacaggcc ctgcagcagg gggacatcaa gctggacaag gactgggcgg gtgtccggct
      601 cctccataga tctccaaacc ctagatcctc tagcaggaag caggactcag gcacatgcca
      661 atgttgactc caggagagaa agggttaaag tggtaactgc ctcagactct ctggtgacac
      721 aggaggacaa cagac
//
