LOCUS       NM_001359645            2880 bp    mRNA    linear   ROD 07-FEB-2025
DEFINITION  Mus musculus RAB3A interacting protein (Rab3ip), transcript variant
            1, mRNA.
ACCESSION   NM_001359645 XM_006513545
VERSION     NM_001359645.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2880)
  AUTHORS   Li,L., Li,J. and Yuan,L.
  TITLE     A direct interaction between CENTLEIN and RABIN8 is required for
            primary cilium formation
  JOURNAL   Acta Biochim Biophys Sin (Shanghai) 55 (9), 1434-1444 (2023)
   PUBMED   37475549
REFERENCE   3  (bases 1 to 2880)
  AUTHORS   Walia,V., Cuenca,A., Vetter,M., Insinna,C., Perera,S., Lu,Q.,
            Ritt,D.A., Semler,E., Specht,S., Stauffer,J., Morrison,D.K.,
            Lorentzen,E. and Westlake,C.J.
  TITLE     Akt Regulates a Rab11-Effector Switch Required for Ciliogenesis
  JOURNAL   Dev Cell 50 (2), 229-246 (2019)
   PUBMED   31204173
REFERENCE   4  (bases 1 to 2880)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   5  (bases 1 to 2880)
  AUTHORS   Vetter,M., Stehle,R., Basquin,C. and Lorentzen,E.
  TITLE     Structure of Rab11-FIP3-Rabin8 reveals simultaneous binding of FIP3
            and Rabin8 effectors to Rab11
  JOURNAL   Nat Struct Mol Biol 22 (9), 695-702 (2015)
   PUBMED   26258637
REFERENCE   6  (bases 1 to 2880)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   7  (bases 1 to 2880)
  AUTHORS   Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
            Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
            Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
  TITLE     Qualitative and quantitative analyses of protein phosphorylation in
            naive and stimulated mouse synaptosomal preparations
  JOURNAL   Mol Cell Proteomics 6 (2), 283-293 (2007)
   PUBMED   17114649
REFERENCE   8  (bases 1 to 2880)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   9  (bases 1 to 2880)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   10 (bases 1 to 2880)
  AUTHORS   Yoshida,M., Yagi,T., Furuta,Y., Takayanagi,K., Kominami,R.,
            Takeda,N., Tokunaga,T., Chiba,J., Ikawa,Y. and Aizawa,S.
  TITLE     A new strategy of gene trapping in ES cells using 3'RACE
  JOURNAL   Transgenic Res 4 (4), 277-287 (1995)
   PUBMED   7655516
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY059863.1, AK152122.1, AA980340.1, AK045783.1 and BM938945.1.
            
            On Jan 13, 2018 this sequence version replaced XM_006513545.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK152122.1, SRR13422597.786782.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                BY059863.1         1-22
            23-749              AK152122.1         2-728
            750-750             AA980340.1         70-70
            751-1866            AK152122.1         729-1844
            1867-2861           AK045783.1         354-1348
            2862-2880           BM938945.1         452-470
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 64.96 cM"
     gene            1..2880
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /note="RAB3A interacting protein"
                     /db_xref="GeneID:216363"
                     /db_xref="MGI:MGI:105933"
     exon            1..194
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            195..475
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     CDS             225..1607
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /note="isoform 1 is encoded by transcript variant 1; gene
                     trap PAT 12; rab-3A-interacting protein; rabin-3;
                     SSX2-interacting protein; rab3A-interacting protein"
                     /codon_start=1
                     /product="rab-3A-interacting protein isoform 1"
                     /protein_id="NP_001346574.1"
                     /db_xref="CCDS:CCDS88090.1"
                     /db_xref="GeneID:216363"
                     /db_xref="MGI:MGI:105933"
                     /translation="MANDPLEGFHEVNLASPTSPDLLGVCDPGTQEQTTSPSVIYRPH
                     PSTLCAAPLQANALDLSDLPTQPVYSSPRHFNCAEVSNISAHAPDPASSVPSAVASGL
                     TKLTSRKDSCNAEREFLQGATITEASAGNDDIFGLSTDSLSRLRSPSVLEVREKGYER
                     LKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANVKQATA
                     EKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLAAAKTPFKRGHTRNKSTSSA
                     MGGSHQDLSVIQPIVKDCKEADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLT
                     FAKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSKPCRHRI
                     RLGDSSCCYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSL
                     AKLGYFKEEL"
     exon            476..734
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            735..830
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            831..908
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1112
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1241
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1354
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            1355..1454
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            1455..1524
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     exon            1525..2863
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1852..1857
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /note="hexamer: AATAAA"
     polyA_site      1868
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /note="major polyA site"
     regulatory      2087..2092
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /note="hexamer: AATAAA"
     polyA_site      2104
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
     regulatory      2839..2844
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
                     /note="hexamer: ATTAAA"
     polyA_site      2863
                     /gene="Rab3ip"
                     /gene_synonym="B230311A06; Gtpat12; Rabin3"
ORIGIN      
        1 ttctccgccc ggcgctcggc gcaggcgcag tcggctctcc ctccctcggc tcccatcgca
       61 gagagcgcca gccgcggcgg agtggagcgg cgtctgtccg ccgccgtcct ccgcgtctcc
      121 cgagctgggc acgcgcaccc tgcggctctg cgagcgctgc cgagcgcggg cggcggccgc
      181 ggcggatccg gcagcttagg ttgtcctatg atgaagcctt tgctatggct aacgacccct
      241 tggaaggctt ccatgaagtg aaccttgctt cgcctacttc tccagacctt cttggtgtgt
      301 gtgacccggg aacccaagag cagactacct ccccgagcgt catctaccgg ccacacccct
      361 ccacgttatg cgctgcccct ctccaggcca atgccttaga tctttctgat cttcctacac
      421 aacctgtgta ttcgtccccc aggcatttca actgtgcaga agtatctaat atcagcgctc
      481 atgctccgga tccagcatca tcggtaccct ctgcggtagc atcagggctc acgaagttaa
      541 cctccaggaa ggacagctgt aatgcagaga gggagtttct gcagggcgcc accatcaccg
      601 aggcttctgc tggcaatgat gacatctttg ggttgagcac ggatagcctg tcgcgtttac
      661 gaagcccatc tgttctggaa gttagagaga agggctacga aaggttaaag gaagaacttg
      721 caaaagctca gagggaattg aagttaaaag atgaagaatg tgagagactt tcgaaagtgc
      781 gggatcaact tgggcaggag ttggaagaac tcacagctag tttgtttgag gaagctcaca
      841 agatggtgag ggaagcgaac gtcaagcaag ccactgcaga gaagcagctg aaggaagccc
      901 aggggaaaat tgatgtactt caggctgaag tggccgctct gaagacactc gtactgtcca
      961 gttctccaac atcgcctacg caggagcctc tggcggctgc aaagaccccc tttaaaaggg
     1021 ggcacacaag gaacaaaagt acaagcagcg ccatgggtgg gagccaccag gacttgagtg
     1081 tgatccagcc aatcgtaaaa gactgcaaag aggctgattt atcgctgtat aatgagttca
     1141 gatcttggaa ggatgagccc acgatggaca gaacgtgtcc tttcctggac aaaatctacc
     1201 aggaggacat ctttccatgt ttaacatttg caaagagtga gttggcttca gctgttctgg
     1261 aggctgtgga gaacaacact ctaagcatcg aaccagtggg gttgcagccc atccgcttcg
     1321 tgaaggcttc cgctgtcgag tgcggagggc caaaaaagtg tgcgctcact ggccagagta
     1381 agccctgcag gcacaggatt aggctcgggg actccagctg ctgttactac atctctcctt
     1441 tctgcagata caggatcact tctgtatgta acttttttac atacattcga tacattcagc
     1501 agggactcgt gaaacagcag gatgtcgatc agatgttttg ggaagttatg cagttgagaa
     1561 aggagatgtc gttggcaaag ctgggatatt tcaaagagga actctgatgc cctgtgtgcg
     1621 gggccgtgcg tgctgcccct ccctggacca ctgaaggatg acggaacatt tttatggtta
     1681 ctcaatattt atttctaagg agaggccaca gacttccctc ctcttgcaca ctacactgag
     1741 aagtgctgtg atttctttta agctgactga gctgtatccc ttagtggagc acactatgaa
     1801 gaattgcagg cgctagtgat ggtaattcaa cactgcaaat caaaaccacc aaataaatat
     1861 cagacggagt gcgtgtgtct ttcttagctc tgactcggca tagagagttg cagaagacaa
     1921 tagtagtctt ccctttgttc ccctgtgaga ggcaaggaag gagccaggtg gacaggactc
     1981 cttcctgtct gtgtgtatgc tgacatccat acgaaaggtt ttatttatta ttattctgtc
     2041 cgctgtaatg tagtgaatcc cttgatcata atggtttgct aagtgcaata aatgaagaac
     2101 agtgcgcgtg cttgagcatc ctggcttcat gttagcactg agcatcatca tggaatagaa
     2161 ggagtgttaa gattaatgga tgagggcgtg gtctagacgg atgggatctg ccagctctga
     2221 agctgatact cacggagaga ccaccaacat cattcgcaca agtaaaatag gttcgtgtgc
     2281 agacatagtg tagggggggc aaggaaaaca gcctcgttga ctccactatg atcactacgc
     2341 tcacgtttct ggagaatagc cttggacttc agatatttcc tacgtatata tgcacaattc
     2401 tgaatcaaaa tggcctcctt tattaggtgt gtgtgtgtgt gtgtgtgtgt gcgcgcgcgc
     2461 tcgtgtgtgt gcgcatgctc gtggatgcct ctcactcagg actgctgcac acagacctgg
     2521 aattggagtt gcagaccgtt gtcagtgctg tctctccagc tcatctctct tgctttgaaa
     2581 gtaaatcgat ggagcattgc tgccggtaaa ccttcacatc tcaaaaatga tttttctaca
     2641 tgttacgtgt ttgtgtgagg gtgtgtctgc gtgtgtggca gtcacatgac agcttttggg
     2701 aatctgttct ctccttctgt atgggttttc gtgatcaaac agactcagga cttcggggtt
     2761 ggtagcaata tccttatatg cgctgagcca tctctctggt gcggatctcc acatcctaac
     2821 ccttgtgtgt taattgcaat taaatataat ttaattgtct ctaaaaaaaa aaaaaaaaaa
//
