LOCUS       NM_001033172            5304 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RAB11 family interacting protein 2 (class I)
            (Rab11fip2), transcript variant 1, mRNA.
ACCESSION   NM_001033172 XM_129331
VERSION     NM_001033172.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5304)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5304)
  AUTHORS   Rathan-Kumar,S., Roland,J.T., Momoh,M., Goldstein,A.,
            Lapierre,L.A., Manning,E., Mitchell,L., Norman,J., Kaji,I. and
            Goldenring,J.R.
  TITLE     Rab11FIP1-deficient mice develop spontaneous inflammation and show
            increased susceptibility to colon damage
  JOURNAL   Am J Physiol Gastrointest Liver Physiol 323 (3), G239-G254 (2022)
   PUBMED   35819177
REFERENCE   3  (bases 1 to 5304)
  AUTHORS   Alvarez-Dominguez,J.R., Zhang,X. and Hu,W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   4  (bases 1 to 5304)
  AUTHORS   Alvarez-Dominguez,J.R., Hu,W., Yuan,B., Shi,J., Park,S.S.,
            Gromatzky,A.A., van Oudenaarden,A. and Lodish,H.F.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
REFERENCE   5  (bases 1 to 5304)
  AUTHORS   Matthies,H.J., Moore,J.L., Saunders,C., Matthies,D.S.,
            Lapierre,L.A., Goldenring,J.R., Blakely,R.D. and Galli,A.
  TITLE     Rab11 supports amphetamine-stimulated norepinephrine transporter
            trafficking
  JOURNAL   J Neurosci 30 (23), 7863-7877 (2010)
   PUBMED   20534835
  REMARK    GeneRIF: Data demonstrate that AMPH leads to an increase of NET in
            endosomes of single boutons and varicosities in a Rab11-dependent
            manner.
REFERENCE   6  (bases 1 to 5304)
  AUTHORS   Sugawara,K., Shibasaki,T., Mizoguchi,A., Saito,T. and Seino,S.
  TITLE     Rab11 and its effector Rip11 participate in regulation of insulin
            granule exocytosis
  JOURNAL   Genes Cells 14 (4), 445-456 (2009)
   PUBMED   19335615
REFERENCE   7  (bases 1 to 5304)
  AUTHORS   Wang,Z., Edwards,J.G., Riley,N., Provance,D.W. Jr., Karcher,R.,
            Li,X.D., Davison,I.G., Ikebe,M., Mercer,J.A., Kauer,J.A. and
            Ehlers,M.D.
  TITLE     Myosin Vb mobilizes recycling endosomes and AMPA receptors for
            postsynaptic plasticity
  JOURNAL   Cell 135 (3), 535-548 (2008)
   PUBMED   18984164
REFERENCE   8  (bases 1 to 5304)
  AUTHORS   Cullis,D.N., Philip,B., Baleja,J.D. and Feig,L.A.
  TITLE     Rab11-FIP2, an adaptor protein connecting cellular components
            involved in internalization and recycling of epidermal growth
            factor receptors
  JOURNAL   J Biol Chem 277 (51), 49158-49166 (2002)
   PUBMED   12364336
  REMARK    GeneRIF: Rab11-FIP2 has a role in the coupling of receptor-mediated
            endocytosis to the subsequent sorting of receptor-containing
            vesicles in endosomes [RAB11-FIP2]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC105061.16, BC089010.1 and AC162855.6.
            
            On Aug 28, 2009 this sequence version replaced NM_001033172.2.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK154916.1, BC139380.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164132, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-717               AC105061.16        151844-152560
            718-741             AC105061.16        157778-157801
            742-1883            BC089010.1         1-1142
            1884-3324           BC089010.1         1784-3224
            3325-3325           AC162855.6         172928-172928       c
            3326-5304           BC089010.1         3226-5204
FEATURES             Location/Qualifiers
     source          1..5304
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 56.28 cM"
     gene            1..5304
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /note="RAB11 family interacting protein 2 (class I)"
                     /db_xref="GeneID:74998"
                     /db_xref="MGI:MGI:1922248"
     exon            1..717
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /inference="alignment:Splign:2.1.0"
     exon            718..1160
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1629
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1630..1675
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1883
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1884..5294
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5275..5280
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /note="hexamer: ATTAAA"
     polyA_site      5294
                     /gene="Rab11fip2"
                     /gene_synonym="4930470G04Rik; A830046J09Rik; Nrip11"
                     /note="major polyA site"
ORIGIN      
        1 gcgcggggcg gaggccgggc cctaggggcg caggtttcag gatagcggcg aagcggggcg
       61 cggggctgcg cgcggaggcc cggaaggcgc ggaggtgatg tgggcccctg tgcttctacg
      121 gaagaaaggg accccagcag cggcggcggc ctccctaccg gtcctcctga cagcagccct
      181 tagggacctc gcggcagccc tgactgccca gctcactgaa gtgctcttaa ggatgcagtg
      241 atcagggtac ggggctctcc ccgcgggagg ggctctgcct gcgcttctga actctgcgca
      301 gagaaaacaa aacaacaaca acaaaaaaca aaaccgaaaa acaaaacaaa acaaaaaacc
      361 cagaatgatg ctgtctgagc aagcccaaaa gtggtttcca acccacgtgc aggtcacagt
      421 gctccaagct aaagatctga agccaaaagg caaaagtggt accaatgaca catacaccat
      481 aattcagttg ggcaaagaga agtattctac atctgtagca gagaaaaccc tggagccggt
      541 ctggaaggag gaggcctcct ttgagctgcc tgggttgctc atgcagggta gtccggagaa
      601 atacattctt tttcttatag tgatgcacag gtccctggtg ggactggata agtttttagg
      661 gcaggtggca atcaatctca atgacatctt tgaggacaaa caaagaagga aaacagagtg
      721 gtttagatta gaatccaaac aaggaaaaag aataaaaaac aggggtgaga taaaggtcaa
      781 tattcaattt atgaggaaca acatgacagc aagcatgttt gacttgtcaa tgaaggacaa
      841 gacgagatca ccttttgcaa aattaaaaga taagatgaaa gggaggaaaa gcgacggggt
      901 gttttctgat acgtcctctg ccatcgttcc gagcactcac atgcctgatg ccaatcctga
      961 gttttcaagt ggtgaaatgc agatgaaatc caaaccaaaa aagccttttc ttttgggtcc
     1021 tcagcggctc tcttctgccc attcgatgtc tgatttaact gggtcccact tatcttctga
     1081 gaagctgaag tccagcactg tgggtccaac acatcttctc agtcgccaga tagattcctt
     1141 tggagttgtt ccagaaagtg gaagtctcaa gtctccacac agacgaacac taagctttga
     1201 tacttctaaa ttgaaccaac ctggcagcat tgtggatgaa ggtgaacact cttttggaag
     1261 acagagtgac ccatttacaa atgtgactgc ttcattaccc caaaaatttg caacactgcc
     1321 aaggaagaag aatccatttg aagaaagcag tgagccatgg gacagcagca tgaatttatt
     1381 ctcaaaacca attgaagtca ggaaagaaag taagagagag aaaagggaga aggtgagcct
     1441 ctttgaaaga gtgactggca agagagatag caggagacct gacaagctga acaatggtgg
     1501 atctgatagc ccatgtgact tgaaatcacc tagtgctttt agtgaaaacc ggcaggacta
     1561 ttttgaatat gagtcaacta acccgtttac agcaaaattc agggcttcaa ctataatgcc
     1621 atcttcaagt tttcatgtga atccaacaag cagtgaagac ctcaggaaaa tcccggacaa
     1681 caatcctttc gatgccacgg ctgggtaccg gagtctgacc tacgaagagg tgctgcagga
     1741 gctggtgaag cacaaagaac tccttcggag gaaggacacc catatccggg agctagagga
     1801 ctacattgac aacctcctcg tcagggtgat ggaagagaca cccagcatcc tgcgagtgcc
     1861 ctacgagcca tccagaaaag ctgtatacac ccaggaccac ttgtcacccg ggccacccca
     1921 cctctgtgga gaagctactt caacccactc ctgattctct gaactctgat tgtgaaggga
     1981 ttcactacat tcaactccag cttctaactt tgttcccaac cactgtccca aaaattgatg
     2041 atctcaagtc tcttttcaag gaatgacaaa atttagagct ctttattctt ttcgtagaag
     2101 catggatttc ttcagccagt gttctcctgg tgtttgagtt tatggaaagt ataagcagga
     2161 gatagggtag tgtggtttat tctgctgtgt atcctgagca aagacaactg tgcaaagtta
     2221 catctgaaaa tgagctgggg tggggtgggg tggggtgatt gtctgttgcc tgataaccaa
     2281 aggcaacagc aagttccagg aatgaaggtt gggcttggtt tcaatttcat cattaataga
     2341 acagatggtt gcctttgagc cctgaaccaa agactcattg caaccgtggg tgttgagagc
     2401 aggtctctac caacatacag catgaggcag cccacatcta cccttgagga ttgatgtcac
     2461 acactatggg gtctttgttt aaacctgtct ccctagaatg gtagttttct gtggattagc
     2521 tttctgtatt tgtataaaat tattctaaaa tttaaagaga aaagtgatga gataaaaata
     2581 ttgcaggtct tctgctggta tttcaacctt tcagatctaa acactctgaa gtagacagtc
     2641 tttctgaatt gaggatatga agactggctg tatacaggct ggggccaggt acattctgta
     2701 gccctgtagt gagttgcatt ttcctgattt ttatctctag taagacttca ctgaaagtca
     2761 aatgaaagca gagattatag ttttgctgat tttcatattt tttagtcaca aaatcccttg
     2821 ttatctatat tttctgagtt tctgtggttt tctagaaaac atgggttttg aagtgaattt
     2881 ttccccaaat ataaacttca gtacttttct aaaattaaaa tagaggagga aaaatggatt
     2941 tttacaatca gtttttcttc cacttaatta ataattgaag tgattctgta ataaacttca
     3001 aagtctaagg tagacttggt tttcccatat gagatcttgg taaatattag tttttaaatg
     3061 gtgccgttta aaattaacat ttattagatg tcatcaaatt cttagcatat attgatcatg
     3121 gcattgctga gactccacaa ctttttaaag cacccaaatc catgtattca gtattatgac
     3181 agctgcctgc aggtacaata acatgtgtta gccaagtgtg tcctttctag agtctcagtc
     3241 cagtagagac ttgagctgtc tgttgctttt gtcctcagaa taagtttccc ataaatctca
     3301 tctaaaaagc atggttcaaa tgcctttgtt cctttttatg agaagtaagt cataaggcac
     3361 agttttgcct ccattagaat ttgtgcacgt ggattcaaca gcccttactg actggccaga
     3421 ctgaatgagt atttgtttct tagaatctga agtgaagctt tgtccaggtc tggtaggcag
     3481 tgagatttat ctgaggcata attcttgttg ctaaataaaa acaaaagttt gagacaaatg
     3541 aaaagtctgc atttacactc tggaaaatgt tgtgttctag tggtaagagt ttcactcatg
     3601 aacttaatgt tatcattaat caacataaca agcttacaag taaaacaagt tccagggaac
     3661 atagcatgtg gcagtgtcta agtacatgtg tgagctgggc actgtagaaa gaaggccaga
     3721 gacacacttg ctttatcttc caagtggaac ctggagtatt ccagtgattt atttttgtat
     3781 tatcttagag gtggacataa aaatgtatat ttcagtaaac agtgcatgcg caatagattt
     3841 ttaagaacat tttatttctg attttagcct aaaaatacat actcaaaaac acttctacca
     3901 acaagactta aaatcacaga atcaagactg atttaatatc acacacttct gttacataat
     3961 taaactattt cttaacgaca acagtatttt acaggcagtc tcttgtcagt tctaagctca
     4021 gcttgacagt gttgccacac cgccctgcct ctgggacttc aagtgtcatt ccttaaacac
     4081 caaggtcatt gcttagagtt gtatataaga taccatgtaa cccactcatg gtaagtgttg
     4141 gaagcattgc cttttgctgc tctgttctgc attgacccca gttttgccct cctcccatga
     4201 atgtagtatt attcatagat tatacataac tacatgtatt gcttttggca gtaaatcaag
     4261 ttctagttgt aattttccag ctgtgaaaat gttgccttgt atttaaaatg gtttcacgag
     4321 tggaaaccta agtaaataag ctcattagtg acaaacctgc ttcttcatgt ccccctttcc
     4381 catctcacca ctcctcctgc atcctgcttc ccgccccgat gtgagtgctt attcttaaca
     4441 aggagaatct tttaaaatga gaaataaaaa agaaagacct gctatctcta agtagctgta
     4501 ataactttta cacaaagctt ttgttccccc ccccccccaa aaaaaagcag cttaccctgg
     4561 attggagaag caggccgaga ctccttgctg tctgtgccat cgtctgtctc taggtgcagt
     4621 aggtgtcact ggtgcgtgtg ggtgaagtgt gagcatgccc agtcatgtga tctcttctca
     4681 gagggaagga ctgcactgca agctcgtggt gctattggag agggtctgtc agcacatact
     4741 gaaagccccc attttcacag atttataact ttaataatcc agatgctgtc cttggaggta
     4801 tttaatatgc aataggtagc acctttacta attaatctgc atatgaaggg tttcctgatg
     4861 tatttaataa gatgtgtaga agctcttcaa gcattaaact aaagttgacg ttttatttca
     4921 ttgacttttc actgtcaaag aatatcaacc acttacaatg gaattgaagt ctgttaccta
     4981 atggtatttg ggccttttaa tttctgaagc ttctagattg tttgtattgt gaggtacaaa
     5041 aaaaatgctg cagatctagg aatgtatgtt cttagcaagt gtttgaatga tgtaagcatt
     5101 atttaccatt gaagagtacg acccctatgt tcttaagtaa atgcttagta acccatatac
     5161 atttttgcag gtacaaaagt atataaacat tgtataatgt gacagttgta taatttatgt
     5221 actctgatgc atgagtcaga atttttatat atgataattg atttgttata gttgattaaa
     5281 gtgtttaaac ttaaaaaaaa aaaa
//
