LOCUS       NM_001080813            7965 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus RAB11 family interacting protein 1 (class I)
            (Rab11fip1), transcript variant 1, mRNA.
ACCESSION   NM_001080813 XM_134088
VERSION     NM_001080813.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 7965)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 7965)
  AUTHORS   Rathan-Kumar,S., Roland,J.T., Momoh,M., Goldstein,A.,
            Lapierre,L.A., Manning,E., Mitchell,L., Norman,J., Kaji,I. and
            Goldenring,J.R.
  TITLE     Rab11FIP1-deficient mice develop spontaneous inflammation and show
            increased susceptibility to colon damage
  JOURNAL   Am J Physiol Gastrointest Liver Physiol 323 (3), G239-G254 (2022)
   PUBMED   35819177
  REMARK    GeneRIF: Rab11FIP1-deficient mice develop spontaneous inflammation
            and show increased susceptibility to colon damage.
REFERENCE   3  (bases 1 to 7965)
  AUTHORS   Zhang,S., Wang,C., Ma,B., Xu,M., Xu,S., Liu,J., Tian,Y., Fu,Y. and
            Luo,Y.
  TITLE     Mutant p53 Drives Cancer Metastasis via RCP-Mediated Hsp90alpha
            Secretion
  JOURNAL   Cell Rep 32 (1), 107879 (2020)
   PUBMED   32640214
  REMARK    GeneRIF: Mutant p53 Drives Cancer Metastasis via RCP-Mediated
            Hsp90alpha Secretion.
REFERENCE   4  (bases 1 to 7965)
  AUTHORS   Gundry,C., Marco,S., Rainero,E., Miller,B., Dornier,E.,
            Mitchell,L., Caswell,P.T., Campbell,A.D., Hogeweg,A., Sansom,O.J.,
            Morton,J.P. and Norman,J.C.
  TITLE     Phosphorylation of Rab-coupling protein by LMTK3 controls
            Rab14-dependent EphA2 trafficking to promote cell:cell repulsion
  JOURNAL   Nat Commun 8, 14646 (2017)
   PUBMED   28294115
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 7965)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Kitamura,H., Nakagawa,T., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of FLJ
            genes: the complete nucleotide sequences of 110 mouse
            FLJ-homologous cDnas identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (2), 127-135 (2004)
   PUBMED   15449545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC119917.10.
            
            On May 29, 2010 this sequence version replaced NM_001080813.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422600.38561.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-438               AC119917.10        44609-45046
            439-881             AC119917.10        62586-63028
            882-1671            AC119917.10        64320-65109
            1672-3234           AC119917.10        66096-67658
            3235-3343           AC119917.10        68452-68560
            3344-7965           AC119917.10        75861-80482
FEATURES             Location/Qualifiers
     source          1..7965
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 15.91 cM"
     gene            1..7965
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /note="RAB11 family interacting protein 1 (class I)"
                     /db_xref="GeneID:75767"
                     /db_xref="MGI:MGI:1923017"
     exon            1..438
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /inference="alignment:Splign:2.1.0"
     exon            439..881
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1671
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /inference="alignment:Splign:2.1.0"
     exon            1672..3234
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /inference="alignment:Splign:2.1.0"
     exon            3235..3343
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /inference="alignment:Splign:2.1.0"
     exon            3344..7965
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5884..5889
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /note="hexamer: AAGAAA"
     polyA_site      5903
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /note="major polyA site"
     polyA_site      5938
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
     regulatory      7939..7944
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /note="hexamer: AATAAA"
     regulatory      7943..7948
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
                     /note="hexamer: AATACA"
     polyA_site      7957
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
     polyA_site      7965
                     /gene="Rab11fip1"
                     /gene_synonym="2010200K21Rik; 4833414G05Rik; Rcp"
ORIGIN      
        1 ggtccagacc gaggacagcg gctaccttct ggcttcctag cctggtgccg cgtctgccac
       61 catgtccctg gcggcctcag cgggccgggg cccggggacc atgtggtccc ctacccacgt
      121 gcaggtgacg gtgctacagg cgcggggctt gcgggccaag ggacccgggg gcacgagcga
      181 cgcgtacgcg gtgatccagg tgggcaagga gaagtacgcc acgtcggtgt cggagcgcag
      241 cctgggcgcg cccgtgtggc gcgaggaagc caccttcgag ctgcctccgc tgctgtcctc
      301 cggggccgcg ccggccgccg ccgccaccct gcagctcacc gtcctgcacc gcgcgttgct
      361 cggtctcgat aagttcctgg gccgcgccga ggtggacctg cgggagctgc accgggacca
      421 gggccgcagg aagaagcaat ggtacaccct gaagtccaaa cccgggaaga aggacaaaga
      481 gcgcggggaa atcgaggtcg acatccagtt tatgaggaat aacatgacgg ccagcatgtt
      541 tgacctctcc atgaaagaca agtcccggaa tccatttgga aaactgaagg acaagatcaa
      601 agggaagaat aaggacagcg cctcggatac cgcctcggcc atcgtcccca gcgtgacacc
      661 ctcagtcgac agtgacgatg agtccttctc gaaagacaag aaaaagaagt caaagatcaa
      721 gactttgttt tccaagtcga gtctgcagaa gacgcccctc tcccagtcca tgtctgtcct
      781 gcccacttcc aagtcagaca aagttctgtt gcgggccgga gacttccagt cccagtggga
      841 cgatgacgcc catgaggatg agtcctcctc cgcctcggat gtcatgtctc acaagcgaac
      901 atccagtaca gaccaacaac cgaaccagtc caacttcagc cttcccaaga aagaggggct
      961 ttccttcctt gggggcctcc ggtccaagaa tgactctctt tcccgctcta ccgtctgtat
     1021 caacgggaac cacgtttaca tggagcagcc ggaggccagg agtgagatca gagagagcag
     1081 cccttctaat tccccatccc cgcagggctt caggaggaag catttgttct cgtccactga
     1141 aaacctggct gcccgctctc ccaaggaacc aggggaagga ggcggcacat cttctgacag
     1201 gcgactgtcc gactcttcca ccaaggattc catgaagtcc atgtctttgc catcctaccg
     1261 gcctctgacc agtggggaca atagagagag catgtctcca gcaaacgtgg aggctgccag
     1321 agagacaaaa gacagcaaga aacaggagag caagaagtcc tctttgcttt ctctggtgac
     1381 gggaaagagg gatgcggcgg ctaaaggcag tgaaagcgaa cctcttccca ctgtctcaga
     1441 gaaagagaag gagaggaaag gcgcgctcgt ggaagcccag ctgcgggagg aagacctcat
     1501 gagaaggcct gagaaagatg ctctacctgt tgcctcccag tggggcagct ccttgaaccc
     1561 ctttgaggac gtgcagatct cagacccggg agccaccacg gagtccaggt cggaaccgaa
     1621 accaccagtt cctgcggcca gggttcccca gaccaaggct gtgaagccga gactggaagt
     1681 ttctccagag gctcagccca aagccaggct tccctccccc gactctgctc tctttgcccc
     1741 ctttccctct gactctattc agcctcctgt cctttccgac ttgagatgtg actcagagac
     1801 acagttctct gaaagtcctt ctgcctcctc tttcttgtcc cccttagcag ctcctatctc
     1861 cacatccact ccagtcgagc cctggcccac aggccagggt gaggccgatg ctgaaaaacc
     1921 ttccttgctc ctcagagcag tccctagttt aacaccggct gcaaacactg gttcttctgc
     1981 ctcgggatca ccttgtgaac aacttcctac acctgtgcgg aaggggacgg aagaggcgtc
     2041 aggggacaca aggaaggaag ctggcagtga tgaatcggga aagaccctca tgacagagtg
     2101 tgtgtcttct gtggataatg ttcacgatgg cggaatgact acagcagggg aagaagcagc
     2161 gccccctctt ctagaggacg aggcctcctc gtttcaccgc atcgcacaga aacacgaggg
     2221 gatgcatcag aatgccagcg gagggcagaa gaagggcaag aagcgcgtgt ctttttctga
     2281 acagcttttt gtggaagaag aaacagaagg acccactagg cttgaggagg aggacagagg
     2341 tcatgcccag cagctgacac aggaagggcc tgttgctgga agcgtgctcc gtgcagggtc
     2401 tccagagtct ccccacacag aaggcacagg acaggaacct gtgaccgcag aagctcagcc
     2461 taacatttct tctgaaggca agtgtttccc ggaaggcccc acaagtgaag ccagcccagc
     2521 aagaggtacc cagcctttga tggatgagaa ggatgacctc atggctccct gtcagagcaa
     2581 agccagcgat catgaaggcc tgctctctaa ccccctgagt gaccttccgt ccgcctcgga
     2641 tgtgaaatct cccatcatag ctgatctgag cttgtctctc ccgtccattc ctgaagtggc
     2701 atcggatgat gaaagagtcg atgaggttgg agatggagga aaggcagaga agttggttga
     2761 tctagaagca ggagtttcac cctggaacgt gtcacattcc atcctggaga cgtcaggaag
     2821 gtctagtggc agggcaggtg aatcagtgcc cacagagaat cagtgtgact tcaggcccca
     2881 ggttcgctca agtgagaatg aagagctacc aggccctggc actgtcgagg aagagaagct
     2941 gataggaggt gagaagccag cttcacctct gtgcgtatcc caggactctt ctgtgcccag
     3001 cccctcagtc gctgagacct ttcccgccgc atactcttcc cccagttctc caccttccga
     3061 cactcaccac accagtgaag cagaatcgca aaaacaagca acggcagacg tctccactag
     3121 tagagctgag aattttggca agaagaagcc acttctacaa gcctgggtta caccctcaga
     3181 gatacatcca accccagctt tgccaagcgc aggagctggg gcagccaagc acaggcctca
     3241 ccctgtgaag cccatgaaca caacagccac caagattgca aactctagtt tgggaaccgc
     3301 caccatcatc actgagaacc tgatcagcga ggccctcatg aagaaatacc agccctcgga
     3361 tcccgccttt gcctacgcgc agctgaccca cgatgagctg atccagctag tcctcaaaca
     3421 gaaggagacc atcagcaaga aggagtttca ggtgcgggag ctggaggact acatcgacaa
     3481 cctgctagtc agagtcatgg aggagacccc caacatcctc cgagtgccgg cgcagatggg
     3541 caagaaggcc ggaaagatgt aaactgcggg aaggaggcgt ggtctgaagg aggcgtggtc
     3601 tccctagtaa ctagcacacc ggttccgaag gcctgctgtg tgcatcatct ctcaagagtt
     3661 aattctccta gctgaaaacc agattaatga ttacaacgaa tcttttacta tacatctccc
     3721 agcgttttgt ttttcaatgc cactgtgcct ttgactacat tgtaaatatc agatttgatc
     3781 cgatgtgttt taacgccagg gttgttgccc tttgatgctg agatcttccg gtatggatcc
     3841 tccgtgaagg caggctcagg gtgagatgag aaagggactt tgggatgtgt gctgtttcac
     3901 ccgctctctt ggcctttgag cacctcggtt gaggcacaag ctcaattttt aattcgggta
     3961 aacccgagga ctcaagggtt gttttggtga gggttggttt gggaggcgtt gttctgtttt
     4021 cagggtgggg tgttatgtag ccccgggctg gggctgctct tgaactcact gtgtactgag
     4081 attggcctta gatttctgac ctttctgccc cccactgcca agtgctagga ttacagccgt
     4141 gtttgatgcc ttctggtcgg agcacggttg tttacataaa acctctgagc atgcttctta
     4201 gatttttgaa tatgcctttt acaattggca gtaccctctg gccttaaaaa tatgttctcc
     4261 atggattggg ggatatagct cagtgggtaa ggtgcttgca ctacaaacct gatggtctcc
     4321 gtttggattc ttagcatcta tgctaaagcc aggaagagtg gcatgtgcct gggtgggggc
     4381 tgggctgggg gagggcagag ccaggcagat ctcaggggct cactggaaac tccaggttca
     4441 gtgagggaca gtcttaaaca ataaaatgaa aagctaccat agacctctgc ccttcatgtg
     4501 gtcacacaca cacacacaca ctgctcttta gatctatagg gccatttcct ggagacatga
     4561 aagaactaaa gagtcacttt tcaggctgga gtgatagtct agtggttaag agcactcact
     4621 ggctgaacag tggaccaggt ccagaggact tgggttcaat tcccagcaac cacatggtag
     4681 ctcacaactg tctgtaattt ctgttcaagg gaatctgacc gtgtcacccg gacatccatg
     4741 cagacaaaat atcaatacac ataacattaa atttaaaagg aaacagagag tcggtctctc
     4801 ctcagggttc ggggttcctg ttgccccgct ggcctttcct aggtggggag gggactgagt
     4861 tcctctacag catctctgtg aggtggagga tgattttagg accggacctt tggccgtttc
     4921 ctgccatcgg cttgtctcaa tggcgtttcc tggaagggag tagacagtcc actgatttct
     4981 caagatgaag gaggctcagg caggggctgg gtaagtgctc aggggtagag cgccccagcc
     5041 acacgtcagc ggtaaggaac agttgtgaag agctacagga tggcatctgc ttctttgctg
     5101 ctacctcctg atttggggag ttttgttgct gctattttga gacagatctc actggcttta
     5161 agcttttcac acatacacac acccccaccc ccacccccgc ctcagttttt caaatttcca
     5221 aatactggaa ttacaggtat gtgccaccat tcctggtaga tcaatgtatt ttttttttta
     5281 taaaatgtac acacacacac atatatatat atacacatat atgcacacct taatatatat
     5341 atatatatac atatatacac acatcttaaa acacacacat atgtatatat acatacacat
     5401 atagatgcac accttaatat acacacacac acacacacac acacacacac acacacacgg
     5461 ccgctttttc actagtagag ggaattccat tgctggtcac ctcattctgg aattaaaatg
     5521 tttcatgatt tttttttttc ttcctggtag taataaaaaa tctcactaaa tcttaacacc
     5581 tctgctcagc gagtcatagg ccaatgccgt ggatagggtt gccgtggata gggtggggta
     5641 gcggtggttc tcaatgaaga atctgtgtgt tcttatcacc cggaaggtga ggaacgctgg
     5701 ttatactgca gcactttaat ctgaagggca agactgtaac ttgatttacc taacaagctg
     5761 ttgatgatcc acacgtattt ttatttaatc tctcttacag tactagggac cactgtaaat
     5821 ttcttgagat gatttgtatt tttttttttt tttagtgtca tgaaattcat taatatgcct
     5881 ataaagaaac tgtatccact tgatctctga aaatgtacat gtatatttct gttctgcatc
     5941 ctggggtttt ggtttgattt tttgttttgt tttttttgtt tttaacttga tataagtgca
     6001 tttttactgt gataacctaa gtgcactgga gcactgctca gaagaggcag cctggggagc
     6061 tgccttgtgt atgaagagtc tggaggtctc tactgctact cagacctttg gtatgtaacc
     6121 gagtcagctc tagcgaggac cgtctaggtg aagtgaattc ctgtgctctg aaatgccact
     6181 tggggactct ggagaatgaa ggacagttta cttcgggggc tttgctggtt tctgcagtgc
     6241 tgggaaacac tgcctttctg acgttgctgt acctcacaag gtaatagagg ccctgcctac
     6301 ttataataac tgttcctgac tatttggtcg ggcactaagg agtgatacca accaagggaa
     6361 gccgaacctg cattgagcca ctggcagagg ctggtgacag ggagagccct ggagctactg
     6421 aggctgacct ctgccttgtg cttgtagctt ccactgatgc caacttgagg tgccctggag
     6481 gggcctacac tctggagaaa gaagagaagg aagggaagaa agaagaaaga aagagccctt
     6541 tccttgccca tgcctggcta cctccaagaa agcccagcca gagatttggg tggggtatga
     6601 aggcgttgga ttaaatacca gcatactcca ttttaggaca gcatcctaaa aaccagccag
     6661 cccttggcct aatcgtttca tatcatctta tctttggctt cggcacttgg cctggcttcc
     6721 ctgttttatt ccaccatatt acctttactt gggccacaga aagaaggagc aagcaaccct
     6781 gccctgtgcc atgctccact gctgtccagc aagagaggct ggtccatgac gcttcaccgt
     6841 gcactgtatc gaggctagag ttctccatcc ctaggttctt ctcccagtca accacaccgc
     6901 cccctttggg tgtcttgtgc ttgctaattc catgctctgt tgctgagtta cactcttagc
     6961 tggaccctcc cccgagttgt gtttctgtct ttgttttttg agacagtttc tcatgtgagc
     7021 caggttaatc ttgattttat ggctattaat gaccttgaac tcattatcct cctgcctctg
     7081 ccttctgagt gctgggaata tcagagtgtg ctatcattca cagcttttaa tttttttttc
     7141 tgagggtggg ggtgggtact aattgaggat ccttcaagac tgaaaatcta ttgtcttaga
     7201 taagaagcat gaacccgggc tggagagatg gctcagtggt taagagctct gactggggct
     7261 ggagagatgg cttagcagtt aagagcactg tctgatgttc cgaaggtcct gagttcaaat
     7321 cccagcaacc acatggtggc tcacaaccat ctgtaatgag atctgatacc ctcttctggt
     7381 gtatctgaag acagcttcag tgtgcttatt tataataata aataaaatct ttaaagagag
     7441 agagagagct gactgctcgt ccagaggtct agagttcaat tcctggcaac cacatgggga
     7501 ctcacaacca tctgtaatgg aatgcagtgc cctcttctgg tgtgtctaaa gagggctata
     7561 tgtacttaca tatattaaat aaaaaagcct ttttttttga gagagagaga ggtgaaccca
     7621 tgccaacccc aactctgact tttcctacct actttgataa gctactaaat tgactttcac
     7681 ctccctctaa cggaaggttc acctaatact gtgtgtttgc cttacatgtg caaagcacta
     7741 ggcttgatca cacactccag ccccaggact gtaaactgag caatgtgacg gacgatctgt
     7801 aatcccagcc agcaccaggg aggtgaaatc gggtgaccaa cagttcaatt gcattctcag
     7861 cagcataggg aggtttaagt cagacggcga tacacaagcc cttgtctcaa aacaaacaaa
     7921 accctaagac ttcctaacaa taaatacaat cacactacct ttcaa
//
