LOCUS       NM_177994               1822 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus R3H domain containing 4 (R3hdm4), transcript variant
            2, mRNA.
ACCESSION   NM_177994
VERSION     NM_177994.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151846.3.
            
            On Mar 17, 2020 this sequence version replaced NM_177994.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC095970.1, AK088107.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               AC151846.3         83069-83176
            109-263             AC151846.3         86288-86442
            264-385             AC151846.3         86653-86774
            386-506             AC151846.3         87230-87350
            507-592             AC151846.3         87518-87603
            593-678             AC151846.3         87839-87924
            679-734             AC151846.3         88002-88057
            735-1822            AC151846.3         88860-89947
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..1822
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /note="R3H domain containing 4"
                     /db_xref="GeneID:109284"
                     /db_xref="MGI:MGI:1924814"
     exon            1..108
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..835
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /note="isoform 2 is encoded by transcript variant 2; R3H
                     domain-containing protein C19orf22 homolog; R3H
                     domain-containing protein 4"
                     /codon_start=1
                     /product="R3H domain-containing protein 4 isoform 2"
                     /protein_id="NP_818775.2"
                     /db_xref="CCDS:CCDS23997.1"
                     /db_xref="GeneID:109284"
                     /db_xref="MGI:MGI:1924814"
                     /translation="MVALDNSEGGPEATPSGETRLSLPGCLPPLSGSQVKRVSASRRK
                     QHFINQAVRNSDLVPRAKGRKSLQRLENTQYLLTLLETAGGPPGVEDGDLTPAAPGIF
                     AEACSNATYVEVWNDFMNRSGEEQERVLRYLEDESQGKRRRGPGRGEDRRREDPVFTP
                     HECFRRISRRLRSVLKRSRIPMETLESWEERLLAFFSVSPQAVYTAMLDNSYERLLLH
                     AVCQYMDLISASADLEGRRQMKVSNRHLDFLPPELLLSAYLDQQ"
     exon            109..263
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            264..385
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            386..506
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            507..592
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            593..678
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            679..734
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            735..1822
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1803..1808
                     /regulatory_class="polyA_signal_sequence"
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1822
                     /gene="R3hdm4"
                     /gene_synonym="C030046I01Rik"
                     /note="major polyA site"
ORIGIN      
        1 acttccttcg cggcctccgg ccgggctgca acagcggctg caggccatgg tggctctgga
       61 caactcagaa ggcggcccgg aggctacccc gagcggggag accaggctgt ccctccctgg
      121 ctgtctcccc ccactcagcg gctcacaggt gaagagggtc tcagcgtcca gacgcaagca
      181 gcattttatc aaccaggctg tgaggaattc ggacctggtg cccagagcta agggacggaa
      241 gagtctgcag cgtttggaga atacccagta cctgctaaca ctgctggaga ccgctggggg
      301 ccctccaggg gtggaagatg gggacctgac tcctgctgca cctggcatct tcgcagaggc
      361 ctgcagcaat gccacctatg tggaggtctg gaatgatttt atgaaccgct cgggagagga
      421 gcaagagcga gtgctccgtt acttggagga tgagagccag ggcaagcgga gacgtgggcc
      481 tggccgtggg gaggaccgac ggagagagga ccctgtcttc acaccccacg agtgcttcag
      541 gcgcatcagc cgtcgcctgc ggtccgtgct caagcgcagc cgcatcccaa tggaaaccct
      601 ggagagttgg gaggaacggc tgctggcgtt cttctcggtg tccccccaag ctgtgtacac
      661 cgctatgctg gacaacagct atgagaggct cctgcttcat gctgtgtgcc aatacatgga
      721 tctcatctca gccagtgctg acctggaggg ccggaggcag atgaaagtca gcaaccgcca
      781 cctggatttc ctgcctccag agcttctgtt gtctgcctac ctggaccagc aatgatggca
      841 gaacccctgc cagctgcctc gcccggccca gacctctgtc tgctaataag atcttccacg
      901 ctttcagaat ttgaatgcca ccccttccct tcaggaatcc ccttgccctt gccccttcat
      961 gtcccagatc acacagggag gccttgtagc tccccaccct ggtacttgta tttgggtagg
     1021 gagacctaat ggggccctat agctgtccac cctggtactt gtatttgggt ggggagacct
     1081 gcccggggcg tttccctgtg ttttgtctgt ttagctttct ttgagacaga agctcaggca
     1141 aggagtagca gactgttacc ttttttcctc tcctaatcag ttttaatgaa cttggcatgt
     1201 tttggggtag atttctttta atttctcttt tgaagtgggg aggcacaacc aaaacaccta
     1261 gcgccagccg gtagtgggct ctgttgtgac ccctgcctga ccctccatgt ttcagctctg
     1321 atgagggtgg ctggtcctct ctctaggact ctgcagacct ccccaggaca ctttcttgtg
     1381 tgtgtgtgtg tgtgtgtgtg tgtgtctgtc tgtctgtctg tctgtctgtc tgtgtgtgtg
     1441 tgtgtggcgc acatgtatgc acgccatgtg ccatgaacct ggacaagcat tgtctcaagg
     1501 gctcatttta tgcttttttt tttttttttt tttggtgatg tgtgtatctt gtccccagct
     1561 ccctaggccc tgcctgcctt tcagactgtc ctctcctcct ccttctcccc tctccttatg
     1621 ccaggggtcc aggacttcca gccagaagcc tctgaccttg tgttccctgt cccctcccct
     1681 gtcccctctg ctgctcagca tagctgtggt cactgcagag gtcttatatg ttcagcaggc
     1741 ctggccctcc ttcccttccc cttctgtgtg attctttgag cttgggggaa agggacgatt
     1801 ttaataaagc cttggtgctc ga
//
