LOCUS       NM_001168292            4051 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus R3H domain containing 2 (R3hdm2), transcript variant
            1, mRNA.
ACCESSION   NM_001168292
VERSION     NM_001168292.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4051)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4051)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   3  (bases 1 to 4051)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ078477.1, AK122416.1, AK043545.1 and BC053099.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849375,
                              SAMN00849381 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-280               CJ078477.1         108-387
            281-1236            AK122416.1         139-1094
            1237-1624           AK043545.1         1457-1844
            1625-2844           AK122416.1         1483-2702
            2845-4051           BC053099.1         2108-3314
FEATURES             Location/Qualifiers
     source          1..4051
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 74.5 cM"
     gene            1..4051
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /note="R3H domain containing 2"
                     /db_xref="GeneID:71750"
                     /db_xref="MGI:MGI:1919000"
     exon            1..117
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            118..185
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            186..385
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..3355
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /note="isoform 1 is encoded by transcript variant 1; R3H
                     domain-containing protein 2"
                     /codon_start=1
                     /product="R3H domain-containing protein 2 isoform 1"
                     /protein_id="NP_001161764.1"
                     /db_xref="CCDS:CCDS48717.1"
                     /db_xref="GeneID:71750"
                     /db_xref="MGI:MGI:1919000"
                     /translation="MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEDVEKE
                     GEENGLRQETQRRTSSHGHARKRAKSNSKLKLVRSLAVCEESSTPFVDGPLDTQDIIQ
                     LHISCPSDKEEEKSTKDVSEKEDKDKSKEKVPRKMLSRDSSQEYTDSTGIDLHEFLVN
                     TLKKNPRDRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVD
                     QTGKAVIINKTSSTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQ
                     DGRRSKSIEEREEEYQRVRERIFARETGQNGYLNDIRLSKEAFSSSSHKRRQIFRGNR
                     EGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSGISILTRGD
                     SIGSSKGGSAGRLSRPGMALGAPEVCNQVTSPQSVRGLLPCTAQQQQQQQQQQQQLPA
                     LPPTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSN
                     PFGQMSLSRQGSTEAADPSSALFQPPLISQHPQQASFIMASAGQPLPTSNYSTSSHAP
                     PTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQASQQ
                     PGLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMGGQMQGLVVQYTPLPSYQVPV
                     GSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQNGTSPSVGFLQPP
                     GSEQYQMPQSPSPCSPPQMSQQYSGVSPSGPGVVVMQLNVPNGPQAPQNPSMVQWSHC
                     KYYSVEQRGQKPGDLYSPDGSPQANAQMGSSPVTSPTQSPAPSPVTSLSNVCTGLSPL
                     PVLTPFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRG
                     KRQALKSASTDLGTADVVLGRVLEVTDLPEGITRTEADKLFTQLAMSGAKIQWLKDAQ
                     GLPGAGGGDNSGTAENGRHPDLAALYTIVAVFPSPLAAQNASLRLNNSVSRFKLRVAK
                     KNYDLRILERASSQ"
     exon            386..427
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            428..514
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            515..641
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            642..720
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            721..780
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            781..921
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1030
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1126
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..1158
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1212
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1445
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1624
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1625..1726
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1727..1969
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2096
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2097..2257
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2258..2412
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2413..2513
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2514..2683
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2684..2831
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2832..2929
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            2930..3014
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     exon            3015..4030
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3995..4000
                     /regulatory_class="polyA_signal_sequence"
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /note="hexamer: TATAAA"
     polyA_site      4013
                     /gene="R3hdm2"
                     /gene_synonym="1300003K24Rik; mKIAA1002"
                     /note="major polyA site"
ORIGIN      
        1 gtgcattgca agaggcgacc ctgtccttcc tcagtgtctc tcagcagtaa acctgataca
       61 gttcctaaga tcccgcctgg atggaggagc cagcaccata tctgtgctag aaatcaggtt
      121 aaacttgttt cttaaatgag atgccatacc agcactggac tcatggagac tgagcattta
      181 ttcagaaatc cataaaagct gctgtaccct gctgcagaac atgtctaaca gtaacactac
      241 tcaggagact ctggaaataa tgaaagaatc agaaaaaaaa ctggtggaag aatctgtaaa
      301 caaaaataaa tttatatcca aaactccaag taaggaagac gtcgagaagg agggtgaaga
      361 gaatggtctg cgtcaggaga cacagagacg gacatccagt catggccatg ccaggaaaag
      421 agccaagtct aattccaaac tcaagttggt gcgcagtctg gcagtctgtg aggaatcctc
      481 cactccattt gtcgatgggc cactagacac ccaggatata attcaactgc acatcagctg
      541 cccctctgac aaggaggaag aaaagtccac aaaagatgtc tctgaaaagg aagacaagga
      601 caaaagcaaa gaaaaggtcc caaggaagat gctatccaga gactccagcc aagaatatac
      661 cgactccact ggaatagatc tacatgaatt tcttgtaaat acactgaaaa agaacccaag
      721 ggacagaatg atgctgctaa agttagagca agagattctg gacttcatca atgacaacaa
      781 caaccagttc aagaagttcc ctcagatgac ctcatatcac cggatgctat tacatcgggt
      841 agctgcctac tttgggatgg accacaatgt tgatcaaaca gggaaagctg tcatcatcaa
      901 caaaaccagc agcacgagga tccctgaaca gaggttctca gaacatataa aagatgaaaa
      961 gaacacggaa tttcaacaga ggttcattct caagagagat gatgccagta tggaccgaga
     1021 tgataaccag atgagagttc cattgcagga tggaaggagg agcaagtcaa tagaagagag
     1081 agaggaggaa tatcaaaggg tccgagagag aatatttgcc cgagagaccg gccagaatgg
     1141 atatctgaat gacatcagac tctccaaaga agccttttct tctagctctc acaagagaag
     1201 gcagattttt aggggaaacc gggaagggct gagccgtacc tcaagcagcc gacagagcag
     1261 cacagacagc gagctcaagt ccctggagcc acggccttgg agcagcacag actcagatgg
     1321 ctctgtccgc agcatgcgac ctcctgtcac caaagccagc agcttcagtg gaatctccat
     1381 cctcacccga ggcgacagca ttggcagcag taaaggcggc agtgcaggca ggctctccag
     1441 gccaggcatg gcactaggtg ccccagaagt gtgcaaccag gtcacctcac cccagtctgt
     1501 ccggggcctt cttccttgta ctgcccagca gcagcagcag caacaacaac aacaacaaca
     1561 acttcctgct ctcccaccca ctcctcaaca ccagccaccc ttgaataatc acatgatttc
     1621 acagccagtc ccggccctgc agccctctcc acagccggtt cagttttctc caagctcctg
     1681 tccccaggtc cttctgccag tctctccgcc ccagcagtac aacatggcag aagacctcag
     1741 caaccccttt ggacaaatga gccttagccg ccaaggttct actgaagcag ctgacccctc
     1801 ctcggctttg ttccagcccc cacttatctc ccagcatcct cagcaagcta gtttcatcat
     1861 ggcttctgca ggacagcccc ttcccacttc caattattcc acttctagcc atgctccacc
     1921 tacccagcaa gtcctgccac cccaaggcta catgcagccc cctcaacaga tccaggtttc
     1981 ttactaccct cctggacagt atcctaattc caaccagcaa tatcgacctc tgtctcaccc
     2041 ggtggcctat agcccccagc gtggtcaaca gctgcctcaa gcatcccagc agcctggctt
     2101 acagcccatg atgtctaacc agcagcagac ggcttaccaa ggcatgcttg gggtccagca
     2161 gcctcagaac cagggcctac tcagcaacca gaggagcagc atgggaggcc agatgcaagg
     2221 cctggtggtg cagtacactc cactgccttc ttaccaagtc cctgtgggca gtgactcaca
     2281 aaacgtggtc cagccatcct tccagcagcc catgctggtt cctgccagcc agtctgtgca
     2341 aggaggcctc ccaacaggag gtgtgcctgt gtactacagc atgatcccac cagctcagca
     2401 gaacggaacg agcccttctg tgggctttct gcagcctcct ggctctgagc agtaccagat
     2461 gcctcagtct ccctctccct gcagcccacc acagatgtca cagcagtact caggagtgtc
     2521 accttctgga ccaggtgtgg tggtcatgca actgaatgtc cctaacggac cccaggcccc
     2581 ccagaatcca tccatggtcc aatggagtca ctgcaaatac tacagcgtgg agcagcgtgg
     2641 tcagaagcct ggagacctgt acagccctga tgggagcccc caggccaacg cacaaatggg
     2701 cagcagcccc gtcacatctc ctacccagtc tccagcaccc tctcctgtca cgagcctcag
     2761 caacgtctgc actggactca gccccctgcc tgtcctcaca ccattccccc ggcctggggg
     2821 tcctgcacag ggtgacgggc gctattccct actgggtcag ccattacagt acaatctgtc
     2881 catctgccct cccttgctcc atggccagtc aacttacacg gtgcaccagg gacagagcgg
     2941 attgaagcac ggaaaccggg gcaagagaca agcactgaaa tctgcctcca ctgacctggg
     3001 gacagcagat gttgtgcttg gaagggtgct ggaggtgact gacctccctg aaggaatcac
     3061 ccgtacggag gctgacaaac tcttcaccca gcttgccatg tctggtgcca agatccagtg
     3121 gcttaaggat gctcaggggc tgcctggtgc aggcgggggg gacaacagtg ggactgctga
     3181 gaacggccgc cacccggacc tcgcagccct gtacacgata gtggctgtgt tccccagccc
     3241 cctggccgcc cagaacgcct cccttcgcct caacaactct gtgagtcgct tcaaactccg
     3301 agtggctaaa aagaactacg acctgaggat cctggaacga gctagctctc aatagctggg
     3361 ggaggggagg ggctggcaca gtgggagcaa aggccaagca cagggagcca aggcggacgg
     3421 acagacggat gactggccca attccattat ggctgaagag agaagcaaac agattcttac
     3481 actggcatgg gactcccttg ccacggttcc cccttttccc tggttggtcc ccttctgtct
     3541 ccccctcctt cccatcttct atcatttttt aaatctcttc tcccaccatg aaattaattt
     3601 ctttcatatt tttggccgag tagaattgag aggctctgcc ctcccctttt cccatttcat
     3661 caccagccca atctccctcc cctcttttgg tcttcatgaa tatatttata tggacagaat
     3721 taagaaaaat aaattgattt ccccattcgt tcactttccc catctcgtct ccccaaaccc
     3781 cacagagtta aaacttggga ctcccctcat ccctaatcca tccccagagc acttgtatat
     3841 tgtttgtttg aggtttgtgc cacagtgaca gacacagtat ttaattgcac atacagatgt
     3901 ttgctgggtt cactgtaaat tttatttaat ctggtttttt gtttgtttgt ttgtttgggg
     3961 agttacttgg ggggaggttg gttttgttta taaatataaa aaaagcaaaa aaacctgtca
     4021 ctggccatca aaaaaaaaaa aaaaaaaaaa a
//
