LOCUS       NM_001081670            2871 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PWWP domain containing 4D (Pwwp4d), mRNA.
ACCESSION   NM_001081670 XM_892732 XR_004721
VERSION     NM_001081670.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX465196.11.
            
            On Aug 16, 2013 this sequence version replaced NM_001081670.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849381,
                              SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                BX465196.11        132651-132704
            55-147              BX465196.11        132823-132915
            148-312             BX465196.11        134207-134371
            313-2871            BX465196.11        136266-138824
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 38.09 cM"
     gene            1..2871
                     /gene="Pwwp4d"
                     /gene_synonym="EG546325; Gm5936"
                     /note="PWWP domain containing 4D"
                     /db_xref="GeneID:546325"
                     /db_xref="MGI:MGI:3645575"
     exon            1..54
                     /gene="Pwwp4d"
                     /gene_synonym="EG546325; Gm5936"
                     /inference="alignment:Splign:2.1.0"
     exon            55..147
                     /gene="Pwwp4d"
                     /gene_synonym="EG546325; Gm5936"
                     /inference="alignment:Splign:2.1.0"
     exon            148..312
                     /gene="Pwwp4d"
                     /gene_synonym="EG546325; Gm5936"
                     /inference="alignment:Splign:2.1.0"
     exon            313..2871
                     /gene="Pwwp4d"
                     /gene_synonym="EG546325; Gm5936"
                     /inference="alignment:Splign:2.1.0"
     CDS             498..2684
                     /gene="Pwwp4d"
                     /gene_synonym="EG546325; Gm5936"
                     /codon_start=1
                     /product="uncharacterized protein LOC546325"
                     /protein_id="NP_001075139.1"
                     /db_xref="CCDS:CCDS53112.1"
                     /db_xref="GeneID:546325"
                     /db_xref="MGI:MGI:3645575"
                     /translation="MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILP
                     VGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGS
                     SFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLCLRLRQLLPLSLCQRLHLHLRL
                     RLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGKAQAHTAVG
                     LPRSEMEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTR
                     FKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKP
                     DSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRG
                     ARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEG
                     NMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSL
                     LGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPD
                     RMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLE
                     DDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKE
                     AEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP"
ORIGIN      
        1 gaagagaagc cccaaggact ggctgctcac tcagccctgt ctctttgtcc tcaggatgac
       61 cctgtttgtg tgacagcacc ttaccctgga tagttgctgc tcactcctgt tgtctgagag
      121 agaagctggg aggcatttga ggaggaggag atatccgtgt gacaaggccc aggactccaa
      181 gggggttgga tcagaggaaa ccaacaccag gagatgacac agcctcctag gatgaagagc
      241 cactgtctct gtgatcccta agttgaactc catacctcca cagtacacgt gtgctattgc
      301 atcatccaga aggataagcg cgtaccaccc tgagcgactt cggtcagttc aaacttctct
      361 accagattct ggagggagag cagcgccaca ggcaggagag cagagccaga gaggaccggc
      421 gggcagtcac aacagtgccc agaacaacca aaggagtcac cctgtcctga tcagcacagc
      481 cccagagttc agtcaccatg gactcgtcag aatatgtact ctgtggctgg aagagccagc
      541 tgtgtcctgc aagggtgttg tccagaccca ggaccccagc ccatagtaaa aggagagggg
      601 tgcccttcct ggaggtccaa atactgcctg tgggtgagaa gaggagagtg aggagctcca
      661 aggtgaggcc cctagccaag tctgaaatca taagcatcaa ctccttggca ggaaaggagt
      721 cacggggcag gggctcgcca gggcagacca gggcatccag gagagccctc aaggtggccc
      781 tggatggtct gggtgaggga agcagcttct ttcaaggagg aagagcaggt agccgaagaa
      841 ccagcacctt ggctccaaag gttccaaaag agcaggccag ctccagcagc tccagcctag
      901 gtcagcgcct gtgcctgcgc ctgcgccagc ttctgcccct gagcctgtgc cagcgactgc
      961 acctacacct gcgcctgcgt ctgcacctgc acatgcacct gtgcctccag gggcgcaacc
     1021 agaaaggcca agggctctcc cagaggagtc ctgggaagcg ggtccgcccg gatccaggtc
     1081 ctgtgatgat gggctcgcag aatgtgcctg cagtgcctgt ggggaaagcc caggcccaca
     1141 ctgctgtagg cctcccgcgc tctgaaatgg aaggggatgt gttaagaggc accagagtgt
     1201 ggccaagtta ctcaaagaag acacccttgg gaaaagctgg cggtaatcca gggaagagaa
     1261 agccaggcac agggaagaga aagctcaggt ctttgagtgc cccagcctcc agaaagggta
     1321 cccgatttaa aaccgagcag caggctgcct ctgggccacc gaggcacatc tctatctcac
     1381 ccaaagccct caaacaacga gttcggtgtg ctggcttaga gatccgggca gctggagccc
     1441 aaagaaagac cgccctcgca gagaacaagg accatcctgg cttggggacc ccgaagccag
     1501 actcaaagcg ggcatctgca gcctgcatgc ccccagtcct gaggctacgc aggtcactcc
     1561 gcatagctag tcgaaaaaag aagacccatg tgctgtgtgc cctgtgtggg ctcccagaat
     1621 gggaacccca agtgcactca aaggtgacca acaccaggtt caagaggaga ggggcccgag
     1681 ttcagaaaga tgccaaagcc accaatgtgg tttctgccca ggagcccagc accattgagc
     1741 aaggaacgct ggtttggttc aaatttcagg accttccttt ctggccagca gtggtcaaga
     1801 gtgtcagcaa aatcgataag atggcgaggg tgctgttgat cgagggcaac atgcagtttg
     1861 agcgcagggg tatccgtgtc cctctccgca agttgaagca cctggactgt ggggagaaag
     1921 tatcacttgt gaggagagcc agcagactgt acgcccaggg catcaactgg tgcttctcag
     1981 tgatcgacca ctacagagag ggcctctccc gtggctcctt actgggctcc tttatggact
     2041 actacaccac ccaagccagt tacccgctaa ggagagccgt ccaggagggt gacctgcaca
     2101 tcgatttccc caaggtgagc tatgctgaat tggaagattg ggaggaggag accgccctgg
     2161 gtgggaaggg gccctacaag aaactcctgc ccgaccgcat gagggccgct tgggacagag
     2221 ccaaccagaa gctcgtggac ttcatcgtga agagaaaggg ggccgaccag cacctgctgg
     2281 acatcgtgaa gggcagaaaa ccgtccaggt ggctggacga tctttggaaa tcaaagaggg
     2341 aagtcttctg cattgagacc tacctggagg acgatgacca gctgcatctc gtggccagac
     2401 atttgcaaga agtggccaag gaagcagacg aggccctgct ctcgctggca agaggagaca
     2461 aagtgaggtt taccatggaa gttctttttc cagaagccat catctactcc atcgctgccc
     2521 tggatgagct cagctacaag gaggcagaag agaagtacct gcgtggccca cccgtgcact
     2581 accgtgagaa agagctattc gacaagacca tcttaaaggc ggccaggaag aggtcagcag
     2641 ccaggattcg ggctgccagg gaccctcctg tgcccactcc ttagaaggga tcgtcctcct
     2701 ttcagctgtc acccctgagg ctcccaagac aggagacagg aagtgcctcc aaactggaac
     2761 atctgggaga ccgtgggggc acacaatggc tgctgtcaaa gctcctcact aagtgtttct
     2821 ttaccccctc gaaataaatg ttcacgttcc tgcttgacag tgtagatgtc t
//
