LOCUS       NM_001025383            2773 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PWWP domain containing 4A (Pwwp4a), mRNA.
ACCESSION   NM_001025383 XM_916758
VERSION     NM_001025383.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2773)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 2773)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 2773)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   4  (bases 1 to 2773)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 2773)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 2773)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 2773)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 2773)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX813330.7.
            
            On Oct 21, 2009 this sequence version replaced NM_001025383.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094343.1, BU053512.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                BX813330.7         98786-98853
            69-165              BX813330.7         99147-99243
            166-331             BX813330.7         100536-100701
            332-2773            BX813330.7         102537-104978
FEATURES             Location/Qualifiers
     source          1..2773
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..2773
                     /gene="Pwwp4a"
                     /gene_synonym="Gm14685"
                     /note="PWWP domain containing 4A"
                     /db_xref="GeneID:574404"
                     /db_xref="MGI:MGI:3710618"
     exon            1..68
                     /gene="Pwwp4a"
                     /gene_synonym="Gm14685"
                     /inference="alignment:Splign:2.1.0"
     exon            69..165
                     /gene="Pwwp4a"
                     /gene_synonym="Gm14685"
                     /inference="alignment:Splign:2.1.0"
     exon            166..331
                     /gene="Pwwp4a"
                     /gene_synonym="Gm14685"
                     /inference="alignment:Splign:2.1.0"
     exon            332..2773
                     /gene="Pwwp4a"
                     /gene_synonym="Gm14685"
                     /inference="alignment:Splign:2.1.0"
     CDS             517..2604
                     /gene="Pwwp4a"
                     /gene_synonym="Gm14685"
                     /codon_start=1
                     /product="uncharacterized protein LOC574404"
                     /protein_id="NP_001020554.1"
                     /db_xref="CCDS:CCDS53093.1"
                     /db_xref="GeneID:574404"
                     /db_xref="MGI:MGI:3710618"
                     /translation="MDSAEYVLCGWKGQLWPARVLSRPRTPANSKRRGAPFLEVQILP
                     VGEKMRVRSSEVRPLDKSEIISIASLAGKESRGRGSPGQTRAYRRALKVALDVLGEGT
                     SLFQGGRAGGQRTSTVAPKVPKEQASSSSSSLGQRLCLQGRNQKGQGLSQRSPGKRGR
                     PGQSPAMMGSQNVPAVRAGEAQAHTAVGLPRSEMQGDVLRGTRVWPSYSETPLGKAGG
                     NPGKRKPGTSKLRSLSAPASREGTRAKNEQQAASGPLRHISISPKALKKRVQCAGLEI
                     RATGAQRKTALAENKDHPGPGTPKPDSKGASAAYTPPVPKLRRSLRIASQKKKPHVLC
                     ALCGLPEREPQVHSKVTNTRFKRRGARVQKDAKATNVASAQGPSTIERGTLVWFKFQD
                     LPFWPAVVKSVSENDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASR
                     LYAQGINWCFSVIDHYREGLAHGSFLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVS
                     YAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKG
                     RKPSRWLDDLWKSKREVFCIETYLEDEDQLHLVARHLQEVAKEADEALLSLARGDKVR
                     FTMEVLFPEAIICSIAALDELTYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAA
                     RIRAARDPPVPTP"
ORIGIN      
        1 atacatttgc gaaggacact cacaggctgg agaggtggaa tgactagaca gacacgcaag
       61 gcatgtagga tgaccctgtt tgtgtgacag caccttaccc tggatagttg ccgcttgctc
      121 gctcgtgttg tctgagagag aagctgggag gcatttgagg aggaggagat atccgtgtga
      181 caagggccag gactccaagg gggttggatc agaggaaacc agccccggga gatgacacag
      241 ccacctagga tgaagagcca ctgtcgtctg tgatccctaa gttgaactcc atacctccac
      301 agtacacgtg tgctattgcg tcatccagaa ggataagcgc gtacaaccct gagcgacttc
      361 agtcagttca aacttctcta ccagattctg gagggagagc agcgccacag gcaggagagc
      421 agagccagag aggaccggcg ggcagtcaca acagtgccca gaacaaccaa aggagtcacc
      481 ctgtcctgat cagcacagcc ccagagtcca gtcgccatgg actctgcaga gtatgtactc
      541 tgtggctgga agggccagct gtggcctgca agggtgttgt ccagacccag gaccccagcc
      601 aatagtaaga ggagaggggc gcccttcctg gaggtccaaa tactgcctgt gggtgagaag
      661 atgagagtga ggagctccga ggtgaggccc ctagacaagt ctgaaatcat aagcatcgcc
      721 tccttggcag gaaaggagtc acggggcagg ggctcgccag gtcagaccag ggcatacagg
      781 agagccctca aggtggccct ggatgttctg ggcgagggaa ccagcttgtt tcaaggagga
      841 agagcaggtg gccaaagaac cagcaccgtg gctccaaagg ttccaaaaga gcaggccagc
      901 tccagcagct ccagcctagg tcagcgcctg tgcctccaag ggcgcaacca gaaaggccaa
      961 gggctctccc agaggagtcc tgggaagcgg ggccgcccgg gtcagagtcc tgcgatgatg
     1021 ggctcccaga atgtgcctgc agtgcgagca ggggaagccc aggctcatac tgctgtaggc
     1081 ctcccgcgct ctgaaatgca aggggatgtg ttaagaggca ccagagtgtg gccaagttac
     1141 tcggagacac ccttgggaaa agctggcggt aatccaggga agagaaagcc aggtacatcc
     1201 aagctcaggt ctttgagtgc cccagcctcc agggagggta cccgggctaa aaacgagcag
     1261 caggctgcct ctggaccact gaggcacatc tctatctcac ccaaagctct caaaaaacga
     1321 gttcagtgtg ctggcctaga gatccgggca actggagccc aaaggaagac cgccctcgca
     1381 gagaacaagg accatcctgg cccggggacc ccgaagccag actcaaaggg ggcatcggca
     1441 gcctacacgc ctccagtccc gaagctacgc aggtcactcc gcatagctag tcaaaaaaag
     1501 aagccccatg tgctgtgtgc actgtgcggg ctcccagaac gggaacccca agtgcattca
     1561 aaggtgacca acaccaggtt caagaggaga ggggcccgag ttcaaaaaga tgccaaagcc
     1621 accaacgtgg cttctgccca ggggcccagc accattgagc gaggaacgct ggtctggttc
     1681 aaatttcagg accttccttt ctggccagcg gtggtcaaga gtgtcagcga aaatgacaag
     1741 atggcgaggg tgctgttgat cgagggcaac atgcagtttg agcgcagggg tatccgtgtc
     1801 cctctccgca agttgaagca cctggactgt ggggagaaag tatcactcgt gaggagagcc
     1861 agcagactgt acgcccaggg catcaactgg tgcttctcag tgatcgacca ctacagagag
     1921 ggccttgccc atggctcctt cctgggctcc tttatggact actacaccac ccaagccagt
     1981 tacccgctaa ggagagccgt ccaggagggc gacctgcata tcgatttccc caaggtgagc
     2041 tatgctgaat tggaagattg ggaggaggag accgccctgg gtgggaaggg gccctacaag
     2101 aaactcctgc ccgaccgcat gagggccgct tgggacagag ccaaccagaa gctcgtggac
     2161 ttcatcgtga agagaaaggg ggccgaccag cacctgctgg acatcgtgaa gggcagaaaa
     2221 ccgtccaggt ggctggacga tctttggaaa tcaaagaggg aagtcttctg cattgagacc
     2281 tacctggagg acgaggacca gctgcatctc gtggccagac atttgcaaga agtggccaag
     2341 gaagcagacg aggccctgct ctcgctggca agaggagaca aagtgaggtt taccatggaa
     2401 gttctttttc cagaagccat catctgctcc atcgctgccc tggatgagct cacctacaag
     2461 gaggcagaag agaagtacct gcgtggccca cccgtgcact accgtgagaa agagctattc
     2521 gacaagacca tcttaaaggc ggccaggaag aggtcagcag ccaggattcg ggctgccagg
     2581 gaccctcctg tgcccactcc ttagaaggga tcgtcctcct ttcagctgtc acccctgagt
     2641 ctcccaagac aggagacagg aagtgcctcc aaactggaac atctgggaga ccgtgggggc
     2701 acacaatggc tgctgtcaaa gctcctcact aagtgtttct ttaccccctc gaaataaatg
     2761 ttcacgttcc tgc
//
