LOCUS       NM_001204912            4027 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus peptidyl-tRNA hydrolase domain containing 1 (Ptrhd1),
            mRNA.
ACCESSION   NM_001204912 XR_001632 XR_030747
VERSION     NM_001204912.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4027)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162932.2.
            
            On Jun 18, 2019 this sequence version replaced NM_001204912.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660821.197895.1,
                                           SRR11927932.2416043.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-266               AC162932.2         75681-75946
            267-4027            AC162932.2         78031-81791
FEATURES             Location/Qualifiers
     source          1..4027
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 2.04 cM"
     gene            1..4027
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /note="peptidyl-tRNA hydrolase domain containing 1"
                     /db_xref="GeneID:69709"
                     /db_xref="MGI:MGI:1916959"
     exon            1..266
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..437
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /EC_number="3.1.1.29"
                     /note="peptidyl-tRNA hydrolase domain-containing protein
                     1"
                     /codon_start=1
                     /product="putative peptidyl-tRNA hydrolase PTRHD1"
                     /protein_id="NP_001191841.1"
                     /db_xref="CCDS:CCDS56829.1"
                     /db_xref="GeneID:69709"
                     /db_xref="MGI:MGI:1916959"
                     /translation="MHRKVRPASLMIRKMACSGVEPQILVQYLVLRKDLSQAPFSWPT
                     GALVAQACHAATAALHLHRDHPHTAAYLRELGRMRKVVLEAADETTLKELAETLQQKN
                     IDHTLWLEQPENIATCIALRPYPKEEVSQYLKKFRLFK"
     exon            267..4027
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      580..585
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      602
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /note="major polyA site"
     regulatory      4002..4007
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
                     /note="hexamer: CATAAA"
     polyA_site      4027
                     /gene="Ptrhd1"
                     /gene_synonym="2410017P09Rik"
ORIGIN      
        1 acactaatcc cagcatgcac cgcaaggtac gtccggccag tctgatgatc aggaagatgg
       61 catgctctgg ggtggagcca cagatccttg tacagtactt agtattacga aaggatctat
      121 ctcaggctcc cttttcctgg cccaccggcg cactggtagc gcaggcttgt cacgccgcca
      181 cagcagcctt gcaccttcat cgagaccatc cgcacacggc agcttatctc cgggagctgg
      241 ggcgcatgcg caaggtggtt ctcgaggctg ctgatgagac caccttgaag gagctggctg
      301 agaccctgca gcagaagaac attgaccaca cgctgtggct ggagcagccg gagaacattg
      361 ccacatgcat agccctgagg ccatacccca aggaagaagt gagccagtat ttgaagaagt
      421 tccgattgtt caagtgactg tagttctggg agaactgaaa gtcagctggg tctggggagc
      481 caaatggcca ccatcctgaa gcattgtggg ttcctttcaa tgttgttata ctcttcccct
      541 ctagttatgg tggtttctta agaaccagca caaattcaaa ttaaagctct cattaataag
      601 cacctactac tatcatcatt atcatcattg ccactaagtt caagtgagga gagtggataa
      661 gcatcactat tatctgtggg tcatcgctga cacacaatat gttttctgtt gggaataatg
      721 gacttcaggt cactcaggtt taaaatgttg cctttgagtt ccttacctcc cctccctctc
      781 tctgctcccc atttccctct tctttccttg atgtcccatg actggcctcc agtctctggt
      841 gccataatag aatgcttctt ttcttcctct ttcctgacac ctaacacatc accttcacaa
      901 agtcttccag ccaagaatta ctcccctccc taaacatctg tacatgacaa gtttgtacaa
      961 taattcttac catttattct ctctcaatga atgctgacca tccagtggct gggcagaaga
     1021 gagaataagg gtgggacttc taccatccaa gggactggga gagaggaagc gagttgtaga
     1081 tctgacacgg ggaaagagaa gtgagttctt gagagttcag caaaaaccag aagtattatt
     1141 gctatgttgg ctgtgaggta gccagattag cttagggggt tcagacagat catttgactg
     1201 ccccaggtga agtttggaaa caaatcttgg tttctctgtg tcattattgg ggactagcta
     1261 ggataaataa ttcattttac atactttgac acaggttttg gggattaaac tcaggttatc
     1321 aggttagtgt gacaattttt ttttttacct gttaacccat ctctcagttc attaccggtc
     1381 agggagcgtt tgtcacgctc tcatgatggc tcacctctgt ccagcccagc agcctcttgg
     1441 gccatctgga gcctcggagc ctctttagtg cgggaagtcg ggccgcaggc ggcgggcaag
     1501 cagagcctct ggatggatcc ttcctcagaa gcttcgataa tttgcagaag ctgggccatg
     1561 ctcctcatta acatctgtct gtccgcatag tccggattca tttcactgtg ctcttgctcc
     1621 cagcaggcct ctaggcaaga tgtccctgcc cattgggatg tgccgttggg cattcagcta
     1681 tgatgatgcc ctagaggacc ctgcgcccat gactcctcct ccatcggaat tggcagcatc
     1741 ccctggaagc cagtgattcc agagcgcaag tatcagcatc ttgacaagat agaggagggt
     1801 gcggccagtg tctcttccct tgctgtgact ccatcaccag ccactgacag ttcagacaag
     1861 gcccctgtgg tgaaggctaa agctacccat gtcatcatga gttccctgat cacagagcag
     1921 acccaggaga gcatccagca ttttgaacaa caggcaggac tgagagatgc tggctacaca
     1981 ccccataagg gccttaccac ggaggagacc aagtaccttc gagtggcaga agcactccgt
     2041 aaactaaagc tgcagagtgg agagacagca aaagaagaga agcaccctgc atcagcccag
     2101 tccaccctga gcagcacccc tcacacgtcc cctaagcaaa agtccagagg ctggttccca
     2161 tctggctcct ccacagcctt acttgatctg aataccatgg atcctgggag tggaaatgat
     2221 aggaactcgg cagacaaatg gagcctcttt ggaccacgac ccctgcagaa atctgattct
     2281 ggttttgcta ttcaggttta caaaggtgcc ccaagaccct ctcctgtgga ggtgatgcat
     2341 gcccaggcca cacaagtagg tgaagatcca gcaaccttca agccaccaaa gatggatgtc
     2401 ccattggtag aaggaaagaa gcaaccactt cgaacccata atctcaaacc ccgtgacctg
     2461 aatgtgctca cacgcactgg cttctagaat gctctgtcca gggtctgcaa cttccctggg
     2521 ctctgacata ggagtgatgt ggctaactga ggcctgagcg agtgtgcaga ttgtccttgg
     2581 gtgagtgaga aaaaacactg ctttcaggtt ggtggaaaat gtcagtggtg tagcgttgag
     2641 gacctcacta tcttttttta aaatcattta tcctagaaaa ggactctgat ccttgctttc
     2701 ctaggtaaat tatgctggag tgcttccaat actaaggcct cttgattctt ttcccttgat
     2761 cactatgagc actgacaaat catggtagag gtgcccacca accagtttac acagcggagg
     2821 cctcctgaca ctcattagtc tggacttctc tgagtgctgg gcatggcttg caggaccctg
     2881 gctttctaag tggaaccaca gattgtcccc ccccccaccc cctctttttc tttttctttc
     2941 tttcaagaca gggattctac gtgtagcctt ggctgtccta gaattagctc tgaagaccag
     3001 gctggccttg aacttacaga gatgcacctg cctgcctccc gagtgctggg gttaaagggg
     3061 gtcaccacca cagttctttc tcttggttga tccagcacac cactttgttc tcttgggccg
     3121 tatctgctgt gtcacaggac aaacactagg tcttatacgg cccctttttc ccccgcattt
     3181 taacatgaaa ttaatttaac ttctaattca gtatgatgct ggtttcccca ctctaattcc
     3241 attactgaag attaagccca ggcagggact tgctcattca aggcaagtgc tctaccacgg
     3301 agccgagtca cccctacttc ctggatagta ggctttttta gttgtgtgtt ttgttttgag
     3361 acagcgtctc actctgtagc tgtggctagc ctgaaactca atcagtagat gcccagagaa
     3421 gatgtgcctg cctctgccgt ccagtgctgg gattgaaggt gtgcacagcc acaccagctt
     3481 aagcttttgt tagagtaaag aagacgatag gtatgactgg attatatagt cttcaggttc
     3541 acatgaactt ggcgccactg tattctgata acattgagac cgttttccac caagttagcc
     3601 tcatctgttc agtaacacgt cttaccgagg gaaggaggca aggaagtgcc cttctgtgtc
     3661 tcctcattgt tcacaagcct gttgtgaaca ctcaacgtac gattgctcga tcactttaga
     3721 tagtaagtag tctgtttaca taatgagcta acctcagaga gaagccctgg agtctaagat
     3781 tgttgtaaaa attaatttat ttgtgttatc ttgtattgac aaataaaaat ctttactact
     3841 ttctcaaaaa aaaagttcat tacctaaaat agatattgca gtttttataa gtcaaagcct
     3901 tatagaatct cagcttcttt gagttagacc tcgtgggaag gggaagcctg tttacctgtg
     3961 actctataat atagttcctt atgttttggt gatccctcaa ccataaaatt attacattgc
     4021 tacttca
//
