LOCUS       XM_036162799            3483 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            N (Ptprn), transcript variant X3, mRNA.
ACCESSION   XM_036162799
VERSION     XM_036162799.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..3483
                     /gene="Ptprn"
                     /gene_synonym="IA-2; mIA-A; mKIAA4064; PTP IA-2; R-PTP-N"
                     /note="protein tyrosine phosphatase receptor type N;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 mRNAs, 92 ESTs, 715 long SRA reads, 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 15 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19275"
                     /db_xref="MGI:MGI:102765"
     CDS             222..2969
                     /gene="Ptprn"
                     /gene_synonym="IA-2; mIA-A; mKIAA4064; PTP IA-2; R-PTP-N"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase-like
                     N isoform X3"
                     /protein_id="XP_036018692.1"
                     /db_xref="GeneID:19275"
                     /db_xref="MGI:MGI:102765"
                     /translation="MGAGGSVAKARSSGCLFDRRLCSHLEVCIQGLSWHDDLTQHVIS
                     QEMERIPRLRPPEPHPRDRSGLVPRKPGPAGELLTQGNPTGSSPAAQGFPRPAGGGDG
                     AGAGSPLSSLQAELLPPLLEHLLMPPQPPHPALTYEPALLQPYLFHQFGSRDGSRGSE
                     SSSGVVGVGHLSKAEGPALFSRSASKAILGTHSGHSFGDLTGPSPAQLFQDSGLLYMA
                     QELPVPGRARAPRLPENGGNRAEDSSEGHEEEVLGGRGEKSPPQAAQPELSLQRLTAV
                     LAGYGVELRQLTPEQFSTLLTLLQLLPKGTGRNLEGAVNVGGADVKKTIQQMQRGDPA
                     EALPPTPSLPGYLTASPASSEVQQVLSPGFPEPPHTPSPLGSSSVLLEKKSPLGQSQP
                     TVVGRPSARPSAEEYGYIVTDQKPLSLVAGVRLLEILAEHVHMSSGSFINISVVGPAV
                     TFRIRHNEQNLSLADVTQQAGLVKSELEAQTGLQILQTGVGQREEAAEVLPRQAHGIS
                     PMRSVLLTLVALAGVAGLLVALAVALCMRHHSRQRDKERLAALGPEGAHGDTTFEYQD
                     LCRQHMATKSLFNRAEGQPEPSRVSSVSSQFSDAAQASPSSHSSTPSWCEEPAQANMD
                     ISTGHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCAAAQDESNIKKNRHPDFLPY
                     DHARIKLKVESSPSRSDYINASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCT
                     VIVMLTPLVEDGVKQCDRYWPDEGSSLYHVYEVNLVSEHIWCEDFLVRSFYLKNLQTQ
                     ETRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI
                     LIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNAILKALP
                     Q"
ORIGIN      
        1 agactccgcc taggctcctg ggctgactcc caccaacgtc gccgagactc tggccggaga
       61 gagagctcag agccgggaag gatgaggcgc ccgcggcggc ccgggggctc cgggggctcc
      121 gggggctccg ggggcctccg gctgctggtc tgcctgctgt tgctgagcgg ccgccccggg
      181 ggctgcagcg ccatcagtgc ccacggtcag gagaaaactt gatgggggcg gggggaagcg
      241 tcgcaaaagc aagaagctcg ggctgtctgt ttgaccgcag actttgttcg catctggaag
      301 tctgtattca gggcttgtcc tggcatgatg accttaccca gcatgtgatc tcccaggaga
      361 tggaacgcat ccccaggctt cgccccccag agccccatcc aagggacagg tctggtttgg
      421 tgcccaggaa accaggccct gcaggggaat tgctaactca gggcaatcct actggctcct
      481 ctcctgctgc ccagggcttt ccaaggcctg cagggggtgg ggacggagct ggggcgggct
      541 ccccactgtc ctctctgcag gctgagttgt taccccctct cttggagcat ctgctaatgc
      601 ccccacagcc tccacaccct gctctgacct atgaacctgc actgctacag ccttacctct
      661 tccaccagtt tggctcccga gatggctccc ggggctcaga gagctcctct ggggtagttg
      721 gtgttggtca cctgtccaag gctgaaggtc ctgcactctt cagcagaagt gcctccaagg
      781 ccattttggg gactcactct ggacactctt ttggggacct tacaggtccc tcacctgctc
      841 aacttttcca agattcaggg ctgctctaca tggcccaaga gttgccagtg cctggcagag
      901 cccgggcacc aaggttgcca gagaatgggg gcaacagggc agaggactct tcagagggcc
      961 atgaggagga agtactaggg ggtcgtgggg agaagtcccc tccccaagca gcacaaccag
     1021 aattgagtct gcagagattg actgctgtac tggcaggcta tggagtagag ctgcgtcagt
     1081 tgaccccgga gcagttttct accctcttga ccctgctgca gttgctgccc aagggcacag
     1141 gaagaaatct tgaaggggct gtaaatgttg gaggagccga tgtcaagaaa acaatacaac
     1201 agatgcagag aggagaccca gcagaagctc tgccccccac accctcgctt cctgggtacc
     1261 tcactgccag ccctgcctcc agcgaagttc agcaggtgct gagccctggt ttccctgaac
     1321 ctccccacac acccagccct ctgggctcct cctcagtcct tctggagaag aaaagtccct
     1381 tgggccagag ccagcccaca gtggtgggac ggccatcagc tcgaccatcg gccgaggagt
     1441 atggctatat cgtcactgac cagaaacccc tgagcctggt ggctggagtg aggctgctgg
     1501 agattctggc tgagcacgtg catatgtcct ccggtagctt tatcaacatc agtgtggtgg
     1561 gaccagctgt caccttccga atccggcaca atgagcagaa cctgtctttg gcagatgtga
     1621 cccagcaagc tgggctggtg aagtctgaac tggaagcgca gacagggctc cagattttgc
     1681 agacaggggt gggacagagg gaggaagcag ctgaagtcct tccccgacaa gcccatggca
     1741 tatctcccat gcgctcagtg ctgcttactc tagtggccct ggcaggcgtc gctgggctgc
     1801 tagtggcttt ggcagtggcc ttgtgtatgc gccatcattc gagacagcgg gataaggagc
     1861 gcctggcagc gctggggccg gagggggccc atggtgacac tacttttgag taccaggacc
     1921 tgtgtcgcca gcacatggcc acaaagtccc tgtttaaccg ggcggagggt cagccagagc
     1981 cttctagggt gagcagtgtg tcctcccagt tcagcgacgc ggcccaggcc agccccagtt
     2041 cccacagcag cacaccatct tggtgcgagg agcccgccca ggccaacatg gacatctcca
     2101 caggacacat gattctggca tacatggagg atcaccttcg gaaccgggac cggttggcca
     2161 aggagtggca ggctctgtgc gcctaccaag cagagccaaa cacctgtgcc gccgcacagg
     2221 atgagagcaa catcaagaag aaccgccatc ctgacttcct accctatgac catgcccgaa
     2281 tcaagctgaa agtggagagc agcccttctc ggagtgatta catcaacgcc agccccatca
     2341 tcgagcatga ccctcggatg ccggcctaca tagccacaca gggaccactg tcccacacca
     2401 tcgcggactt ctggcagatg gtgtgggaga gtggctgcac tgtcatcgtt atgctgaccc
     2461 cgttggtgga ggacggtgtc aaacagtgtg accgctactg gccggatgaa ggatcttccc
     2521 tctaccacgt ctatgaggtg aacctggtgt cggagcacat ctggtgcgag gacttcctgg
     2581 tgcggagctt ctaccttaag aacctgcaga cccaggagac gcgcacgctc actcagttcc
     2641 acttcctcag ctggccggca gagggcactc cggcctccac ccggccgctg ctggacttcc
     2701 gcaggaaagt gaacaagtgc tacagaggcc gctcctgccc catcatagtg cactgcagtg
     2761 acggtgcagg gaggacaggc acctacatcc ttattgacat ggtcctgaat cgcatggcca
     2821 aaggagtgaa ggagattgat attgctgcca ccctggagca tgtccgtgac cagcggcctg
     2881 gacttgtccg ttctaaggac cagtttgagt ttgcgctgac agccgtggca gaggaggtga
     2941 atgctatcct caaggccctg ccccagtgag cccccctggg cgcctcagtg ggcatcctgg
     3001 cctcggctcc ttctgcctgt gtgagcatct gtgcacccac tcttcagccc ctacccatct
     3061 gccaccttgg tctgacttgg ccatgggagc ctttcccaac ccagtgtgga agggagtcgg
     3121 gagggaagga aggggtaggc tcgccctgct ttatccatgc tagaaccatg gtatcccatg
     3181 ggaagcagac agcaggcaag gagaggcgtg gacaccggcc acaggtgtgc ccgagcccca
     3241 tcctacctga gtctctgtct ccctctctgg atatgtgcgt ccccactccc accagcctac
     3301 cacctataga caaagcagaa cgaggaaacc ccagctcccc caaccctgct accactggcc
     3361 tgccaccttg accctgctca accttctccc tctagcacaa gggaacattt ctagaaaagt
     3421 aaaatctact tttgtatcag tgtgaataaa gttagtgtgt tgtctgtgca gctgcaacac
     3481 gga
//
