LOCUS       XM_036163880            7258 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            F (Ptprf), transcript variant X11, mRNA.
ACCESSION   XM_036163880
VERSION     XM_036163880.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7258
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7258
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 87 ESTs, 3773 long SRA reads, 27
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 14 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
     CDS             215..5650
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X11"
                     /protein_id="XP_036019773.1"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG
                     NPDPEISWFKDFLPVDPAASNGRIKQLRSGGSPIRGALQIESSEESDQGKYECVATNS
                     AGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE
                     ELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVT
                     ETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYA
                     FRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLV
                     RGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPT
                     IQVKTQQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVT
                     FDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSMPSGPPRKVEVEPL
                     NSTAVHVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRPEESE
                     DYETTISGLTPETTYSITVAAYTTKGDGARSKPKVVTTTGAVPGRPTMMVSTTAMHTA
                     LLQWHPPKELPGELLGYRLQYRRADEARPNTIDFGKDDQHFTVTGLHKGATYVFRLAA
                     KNRAGPGEEFEKEITTPEDVPSGFPQNLRVTGLTTSTTELTWDPPVLAERNGHITNYT
                     VVYRDINSQLELQNVTNDTHLTLLGLKPDTTYDIKVRAHTSKGAGPLSPSIQSRTMPV
                     EQVFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQ
                     PNTEYSFVLMNRGSSAGGLQHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDP
                     SLVRWFYIVVVPIDRVGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLK
                     PYVAAQVDVLPDTFTLGDKKSYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPY
                     SDEIVVQVTPAQQQEEPEMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSI
                     GLKDSLLAHSSDPVEMRRLNYQTPGMRDHPPIPITDLADNIERLKANDGLKFSQEYES
                     IDPGQQFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRK
                     QNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGL
                     IQVTLVDTVELATYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRR
                     VKACNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYM
                     VQTEDQYVFIHEALLEAAMCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLAN
                     SKAHTSRFVSANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQ
                     KAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYF
                     VVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQV
                     HKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPA
                     MVQTEDQYQLCYRAALEYLGSFDHYAT"
ORIGIN      
        1 cgggcgacgg cggcggcagc ggcggactga gaacggcggc ctcagcggct cgagggggga
       61 catgcagacc gacggccccc ggagaggcgg aaggagcgga ggccctggtg ccctgccctc
      121 agtgctgact gcccagcgag agtgactggt ataagcaagc agagacccgg tggattgtct
      181 taggctgtgg ctggctgtgg agctagaacc ctggatggct cccgagccag ccccagggag
      241 gaggatggtg ccccttgtgc ctgctctcgt gatgcttggt ttgatggcag gtgctcatgg
      301 cgacagcaaa cccgtctttg ttaaggtccc cgaggaccag actgggctgt cgggaggggt
      361 ggcctccttc gtgtgccaag ccacagggga acccaagcct cgaattacgt ggatgaagaa
      421 ggggaagaaa gtcagctccc agcgctttga ggtaattgag tttgacgatg gagcagggtc
      481 agtgctgcgg atccagccat tacgagtgca gcgagacgaa gccatctatg agtgcacagc
      541 cacgaacagt ctcggggaga tcaacacaag tgccaagctg tcagtgcttg aagaggacca
      601 gctgccgtct gggttcccga ctatcgacat gggacctcag ctgaaggtgg tggagaaggg
      661 tcgcactgcc accatgctgt gtgcagccgg tgggaaccca gaccctgaga tctcttggtt
      721 caaagacttc cttcctgtgg accctgctgc aagcaacggt cgtatcaaac agctgcgatc
      781 aggtggttca ccaatcagag gtgcattgca gatagagagc agcgaggagt ctgaccaagg
      841 caagtacgag tgtgtggcca ccaactctgc aggcacacgc tactcggccc ccgccaacct
      901 gtatgtgcga gtgcgtcgcg tggctcctcg tttctccatc cctcccagca gccaagaggt
      961 gatgccgggc ggcagcgtga atctcacatg tgtggcagtg ggcgcgccca tgccgtatgt
     1021 gaaatggatg atgggcgccg aggaactgac caaagaggat gagatgccag tcggccgaaa
     1081 tgttctggag ctcagcaatg tcatgcgatc tgccaactat acctgtgtgg ccatctcttc
     1141 attaggcatg atagaagcca cggcccaggt cacagtaaaa gctctgccaa agcctccaat
     1201 tgatcttgtg gtgacagaga caaccgccac cagtgttact ctgacatggg actctggaaa
     1261 taccgagcct gtgtccttct acggcatcca gtaccgcgca gctggcacag acggcccctt
     1321 ccaggaagtg gatggtgtgg ccagcacccg atacagcatt ggtggcctca gccccttttc
     1381 ggaatatgct ttccgtgtgt tggctgttaa cagcattggg cgaggaccac ccagtgaggc
     1441 agtgcgagca cgcacggggg agcaggcacc ctccagccct ccgcgccgtg tgcaggctcg
     1501 aatgcttagc gccagcacca tgctggtcca gtgggaacca cctgaagagc ccaatggcct
     1561 ggtacgggga tatcgcgtct actatacccc agattcccga cgccctttga gcgcctggca
     1621 caagcataac actgacgcag gactccttac caccgtgggc agcctgctac ctggcatcac
     1681 ctacagcctc cgagtccttg ccttcactgc tgtgggtgac ggcccaccca gccccaccat
     1741 ccaagtcaag acacagcagg gagtgcctgc acagcctgcg gacttccagg ctaacgctga
     1801 gtcggacacc aggatccagc tctcgtggct gctgcccccg caggagcgga tcgtcaagta
     1861 tgagctggtg tactgggcag ccgaggatga gggccagcag cacaaggtga ccttcgaccc
     1921 cacctcctcc tacactctgg aggacctgaa gcctgacaca ttgtaccact tccagctggc
     1981 tgcccgttca gatttggggg tgggcgtctt cacgcccacc gtagaggccc gtacagcaca
     2041 gtccatgcct agcgggccac cacggaaggt agaggttgag cctctgaact ccactgctgt
     2101 gcatgtctcc tggaagctgc ccgtccccaa caagcagcac ggacagattc gtggctacca
     2161 ggtcacctat gtgcggttgg agaatggtga gccccgaggc caacccatca tccaggatgt
     2221 catgctggct gaggctcagt ggagaccaga ggagtccgag gactatgaga ccaccatcag
     2281 cggcctcacc cccgagacca cctactccat caccgtcgct gcctacacca ctaaggggga
     2341 tggtgcccga agcaagccca aggtggttac tacaacaggg gcagtcccag gacggcccac
     2401 catgatggtc agcaccacgg ccatgcacac cgcgctgctg cagtggcacc cacccaagga
     2461 gctgcctgga gagctgctgg gctaccgtct ccaataccgg cgggccgacg aggcgcggcc
     2521 caacaccata gactttggca aggatgacca acattttaca gtcaccggcc tgcacaaagg
     2581 ggccacctac gtcttccggc tcgctgccaa gaaccgggct ggcccaggag aagagtttga
     2641 gaaagagatc accacccccg aggatgtgcc cagtggcttt cctcaaaatc ttcgagtgac
     2701 aggactgacc acatctacca cggaactgac ctgggacccg ccggtgctgg cggagaggaa
     2761 tggtcacatc accaactata ctgtggtcta ccgtgacatc aacagccagc ttgaactaca
     2821 gaatgtcacc aacgacacac accttacact cttgggcctt aaaccggaca ccacttatga
     2881 catcaaggtc cgtgcacata ccagcaaagg cgccggccct ctcagcccca gcatccagtc
     2941 ccggaccatg cccgtggagc aagtgtttgc caagaatttc cgtgtggccg ctgcgatgaa
     3001 gacatctgtg ctgctcagtt gggaggtccc cgactcttat aagtcagctg tgcccttcaa
     3061 gatcctgtac aatgggcaga gcgtggaggt ggatgggcac tcgatgcgga agctgattgc
     3121 agacctgcaa cccaacacgg agtactcctt cgtcctgatg aatcgtggca gtagcgccgg
     3181 gggcctacag cacctggtgt ccatccgcac tgccccggac ctcctacccc agaagccact
     3241 gcctgcctcc gcctttatag aggatggccg cttctccctc tccatgcctc aagtgcagga
     3301 cccctcgcta gtcaggtggt tctacattgt ggtggtgccc attgaccgtg tgggcgggaa
     3361 cttgctggca ccaagatgga acacaccaga ggagttggag ctggacgagc ttctggaggc
     3421 catcgagcag ggcgaggaga aacagcggag gcgccggcgc caagcagagc ggctgaagcc
     3481 ttatgtggcg gcccaagtgg atgtgctccc tgacaccttc accctggggg acaagaagag
     3541 ctaccgcggc ttctacaacc ggcccctgtc tccggatctg agttaccagt gcttcgttct
     3601 cgcctccctc aaggaaccca tggaccagaa gcgctacgcc tccagcccct actcggacga
     3661 gattgtagtc caggtgacgc cagcacagca gcaggaggag cccgagatgc tgtgggtgac
     3721 aggccctgtc ctggcggtca ttctcatcat actcattgtc atcgccatcc tcctgttcaa
     3781 gaggaagaga acacactccc catcatcaaa ggatgagcag tcaatcgggc tgaaggactc
     3841 cctgttggcc cactcttctg accctgtgga gatgcgaagg cttaactacc agaccccagg
     3901 tatgcgagac cacccgccca tccccatcac tgacctggca gacaatattg agcgcctcaa
     3961 agccaacgat gggctcaagt tctcccagga gtatgagtcc attgaccctg gacagcagtt
     4021 cacatgggag aattccaact cggaggtgaa caagcccaag aaccgctatg caaatgtcat
     4081 tgcctatgac cattctcgag tcctcctcac ctccattgat ggtgttcctg ggagtgacta
     4141 catcaatgcc aactacattg atggctaccg aaagcagaat gcctacatcg ccacacaggg
     4201 tccgctgccc gagaccatgg gcgatttctg gaggatggtg tgggaacagc gcacagccac
     4261 agtggtcatg atgaccaggc tagaggagaa atcccgggtg aagtgtgatc agtattggcc
     4321 agtccgtggc actgagacct atggcctcat tcaggtgacc ctggtggaca ctgtggagtt
     4381 ggccacatac accatgcgca cctttgccct ccataagagt ggctccagtg agaagcgtga
     4441 gctgcgtcag ttccagttca tggcctggcc agaccacggc gttcctgagt accccactcc
     4501 catcttggcc ttcctgagac gggtcaaggc ctgtaaccca ctagatgcgg ggcccatggt
     4561 ggtgcattgc agtgcgggtg tggggcgcac aggctgcttc atcgtcatcg acgcaatgct
     4621 ggagcgtatg aagcacgaga agacggttga catctatggc cacgtgacgt gcatgcgctc
     4681 acaaaggaac tacatggtgc agaccgagga ccagtatgtg ttcatccacg aggccctgct
     4741 agaggctgcc atgtgcggac acaccgaggt gctcgctcgg aacctctatg cccacatcca
     4801 gaagctaggc caagtgcctc ccggggagag cgtcacggcc atggaacttg agttcaagtt
     4861 gctggccaac tccaaggccc acacgtcgcg ctttgtcagt gccaacctgc cctgcaacaa
     4921 gttcaagaac cgcctagtga acatcatgcc ctatgagctg acccgagtgt gcttgcaacc
     4981 catccgtggt gtggagggct cagactacat caatgccagc tttctagatg gctacagaca
     5041 gcagaaggcc tacatagcta cacaggggcc tctggcagag agcaccgagg acttctggcg
     5101 catgttatgg gagcacaatt ccaccatcat cgtcatgctg accaagcttc gggagatggg
     5161 cagggagaaa tgtcaccagt actggccagc agagcgctcc gctcgctatc agtacttcgt
     5221 tgttgacccg atggctgagt acaacatgcc ccagtatatt ctgcgtgaat tcaaagtcac
     5281 agacgcccgg gatgggcagt caaggacaat ccgacagttc cagtttacag actggccaga
     5341 gcaaggagta cccaaaacag gtgaaggctt catcgacttc atcgggcagg tgcacaagac
     5401 aaaggagcag tttggccagg atgggcccat cacggtgcac tgcagtgctg gtgtgggccg
     5461 caccggtgtg ttcatcaccc tgagcattgt cctggagcgc atgcggtatg agggtgtggt
     5521 tgacatgttc cagaccgtga agaccctccg cacacagcgc cctgcaatgg tgcagacaga
     5581 ggaccaatac cagctgtgct accgtgcggc cctggaatac ctcggcagct ttgatcacta
     5641 tgcaacgtaa ctactgctcc cctctcctcc gacgctcccc cgcggggctc cggaggggac
     5701 ccagctcctc tgagccatac caaccatcgt ccagccctcc tgcacggatg ctgttgccgg
     5761 cagagcacag cccactggga tcacagcatt tcggggaaca ttgccacacc agtcagagag
     5821 cccagaacac ctgggcaagt aggcggactg gcagcctggc tctgggccct cgtccaccgg
     5881 gccaagtgga gccccgcttc aagctctctg ttcagctccg cgttctcatg cttctcatgg
     5941 ggtgggaaaa gggggcaaag cccccacttt ttatacacta ggcggggtag actgcggggt
     6001 cctagcctct tcctccgact ttgcttttgc aggtctttca ctgcagatgg ggctgctgtg
     6061 ggagttggga cttgtttgtt ttcctttttg agttcacgtt ggatcctttc ttgtacaact
     6121 tctgcggaag gacacagtag taactcgcct tccttgtgca gagctagggc cctacctgag
     6181 caagtcggct gtggcccggg aggcagcgtg actcctgctg tcctccagcc tttcagatga
     6241 gatcctattc cagccaaatg cagggaaaca ctttattttg tttgttttag gttttgtttt
     6301 tccttgagag ccttttttta ggccccacag acagtggtgg gtggggaggc gataggaaac
     6361 acattcccca gtgtgcattt aacattcata gcctacaacc acagacgtgt ctgggggagc
     6421 ctggcaaggc gttcctcgtc accatcgtgt ttgcaaaggt tcaaaaaaca aaaatcaaaa
     6481 aaaaaaaaaa acataaaaat attttttttt aagaaaagaa ataaagattc atcccctggc
     6541 ctctacttca gattcgaagt gggaggcaac tcaatgtgcc tggggctcgc catgggccca
     6601 cagagtctcg ctatcatccc cagcgtcgca gtgtggcagg tgtttgtagg ctgtgggttc
     6661 tggccacctc gggaaatgaa tggcacaggt gagggcctgt gccacgcccc acacacctca
     6721 gggccaagcg ggggcgtggc tggcccttca ggtcaggcca gtgggcctgg tagcacatgt
     6781 ctgtcctcag ccggacagat gctttctctc ctggtttgca gctgtcttca aatcccccca
     6841 tgacccgctc ttcccactcc ttcaagttgc cctcacaaac caatgtggca agactactgg
     6901 acttgtatcc atggtactat actcagtcct cttatctcag cttgctgagg ggcagggaga
     6961 gggtctcttc ctctgggcag cactatctag ataggtaagt gggggcgggg aagggtgcat
     7021 agctgtttta gccgagggac tcgataccga cgtccccaga tatagctagg ctaagtcaag
     7081 atcaacagtc cggggttggt ggtgttggat gaaacattca tttttacctt gtggatgcta
     7141 gtgctgtaga gttcactgtt gtacacagtc tgttttctat ttgttaagaa aaactacagc
     7201 atcattgcat acttcttgat ggtaataaat ttgaataatc aagatttctt acacacta
//
