LOCUS       XM_030253360            7383 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            F (Ptprf), transcript variant X12, mRNA.
ACCESSION   XM_030253360
VERSION     XM_030253360.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7383
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7383
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 82 ESTs, 3919 long SRA reads, 25
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 29 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
     CDS             352..5775
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X12"
                     /protein_id="XP_030109220.1"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG
                     NPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYS
                     APANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAEELTKED
                     EMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATS
                     VTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYAFRVLAV
                     NSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVY
                     YTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQ
                     QGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVTFDPTSS
                     YTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSMPSGPPRKVEVEPLNSTAVH
                     VSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQETTISGLTPETTY
                     SITVAAYTTKGDGARSKPKVVTTTGAVPGRPTMMVSTTAMHTALLQWHPPKELPGELL
                     GYRLQYRRADEARPNTIDFGKDDQHFTVTGLHKGATYVFRLAAKNRAGPGEEFEKEIT
                     TPEDVPSGFPQNLRVTGLTTSTTELTWDPPVLAERNGHITNYTVVYRDINSQLELQNV
                     TNDTHLTLLGLKPDTTYDIKVRAHTSKGAGPLSPSIQSRTMPVEQVFAKNFRVAAAMK
                     TSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSS
                     AGGLQHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPIDR
                     VGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPDTFT
                     LGDKKSYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQE
                     EPEMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVE
                     MRRLNYQTPGSSAPSCPNISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPG
                     QQFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAY
                     IATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVT
                     LVDTVELATYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKAC
                     NPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTE
                     DQYVFIHEALLEAAMCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAH
                     TSRFVSANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYI
                     ATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDP
                     MAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTK
                     EQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQT
                     EDQYQLCYRAALEYLGSFDHYAT"
ORIGIN      
        1 gggcgggcgg gcgcgcgcgg ctggagctgg cgcgggagcg gtggcggcgg cggcggcaga
       61 ggcggcggct ccggctccag ctccggctcc ggctccggct cctgctcggg cggcggtgga
      121 ggtggcggtg gcgggagcgg gcgacggcgg cggcagcggc ggactgagaa cggcggcctc
      181 agcggctcga ggggggacat gcagaccgac ggcccccgga gaggcggaag gagcggaggc
      241 cctggtgccc tgccctcagt gctgactgcc cagcgagagt gactggtata agcaagcaga
      301 gacccggtgg attgtcttag gctgtggctg gctgtggagc tagaaccctg gatggctccc
      361 gagccagccc cagggaggag gatggtgccc cttgtgcctg ctctcgtgat gcttggtttg
      421 atggcaggtg ctcatggcga cagcaaaccc gtctttgtta aggtccccga ggaccagact
      481 gggctgtcgg gaggggtggc ctccttcgtg tgccaagcca caggggaacc caagcctcga
      541 attacgtgga tgaagaaggg gaagaaagtc agctcccagc gctttgaggt aattgagttt
      601 gacgatggag cagggtcagt gctgcggatc cagccattac gagtgcagcg agacgaagcc
      661 atctatgagt gcacagccac gaacagtctc ggggagatca acacaagtgc caagctgtca
      721 gtgcttgaag aggaccagct gccgtctggg ttcccgacta tcgacatggg acctcagctg
      781 aaggtggtgg agaagggtcg cactgccacc atgctgtgtg cagccggtgg gaacccagac
      841 cctgagatct cttggttcaa agacttcctt cctgtggacc ctgctgcaag caacggtcgt
      901 atcaaacagc tgcgatcagg tgcattgcag atagagagca gcgaggagtc tgaccaaggc
      961 aagtacgagt gtgtggccac caactctgca ggcacacgct actcggcccc cgccaacctg
     1021 tatgtgcgag tgcgtcgcgt ggctcctcgt ttctccatcc ctcccagcag ccaagaggtg
     1081 atgccgggcg gcagcgtgaa tctcacatgt gtggcagtgg gcgcgcccat gccgtatgtg
     1141 aaatggatga tgggcgccga ggaactgacc aaagaggatg agatgccagt cggccgaaat
     1201 gttctggagc tcagcaatgt catgcgatct gccaactata cctgtgtggc catctcttca
     1261 ttaggcatga tagaagccac ggcccaggtc acagtaaaag ctctgccaaa gcctccaatt
     1321 gatcttgtgg tgacagagac aaccgccacc agtgttactc tgacatggga ctctggaaat
     1381 accgagcctg tgtccttcta cggcatccag taccgcgcag ctggcacaga cggccccttc
     1441 caggaagtgg atggtgtggc cagcacccga tacagcattg gtggcctcag ccccttttcg
     1501 gaatatgctt tccgtgtgtt ggctgttaac agcattgggc gaggaccacc cagtgaggca
     1561 gtgcgagcac gcacggggga gcaggcaccc tccagccctc cgcgccgtgt gcaggctcga
     1621 atgcttagcg ccagcaccat gctggtccag tgggaaccac ctgaagagcc caatggcctg
     1681 gtacggggat atcgcgtcta ctatacccca gattcccgac gccctttgag cgcctggcac
     1741 aagcataaca ctgacgcagg actccttacc accgtgggca gcctgctacc tggcatcacc
     1801 tacagcctcc gagtccttgc cttcactgct gtgggtgacg gcccacccag ccccaccatc
     1861 caagtcaaga cacagcaggg agtgcctgca cagcctgcgg acttccaggc taacgctgag
     1921 tcggacacca ggatccagct ctcgtggctg ctgcccccgc aggagcggat cgtcaagtat
     1981 gagctggtgt actgggcagc cgaggatgag ggccagcagc acaaggtgac cttcgacccc
     2041 acctcctcct acactctgga ggacctgaag cctgacacat tgtaccactt ccagctggct
     2101 gcccgttcag atttgggggt gggcgtcttc acgcccaccg tagaggcccg tacagcacag
     2161 tccatgccta gcgggccacc acggaaggta gaggttgagc ctctgaactc cactgctgtg
     2221 catgtctcct ggaagctgcc cgtccccaac aagcagcacg gacagattcg tggctaccag
     2281 gtcacctatg tgcggttgga gaatggtgag ccccgaggcc aacccatcat ccaggatgtc
     2341 atgctggctg aggctcagga gaccaccatc agcggcctca cccccgagac cacctactcc
     2401 atcaccgtcg ctgcctacac cactaagggg gatggtgccc gaagcaagcc caaggtggtt
     2461 actacaacag gggcagtccc aggacggccc accatgatgg tcagcaccac ggccatgcac
     2521 accgcgctgc tgcagtggca cccacccaag gagctgcctg gagagctgct gggctaccgt
     2581 ctccaatacc ggcgggccga cgaggcgcgg cccaacacca tagactttgg caaggatgac
     2641 caacatttta cagtcaccgg cctgcacaaa ggggccacct acgtcttccg gctcgctgcc
     2701 aagaaccggg ctggcccagg agaagagttt gagaaagaga tcaccacccc cgaggatgtg
     2761 cccagtggct ttcctcaaaa tcttcgagtg acaggactga ccacatctac cacggaactg
     2821 acctgggacc cgccggtgct ggcggagagg aatggtcaca tcaccaacta tactgtggtc
     2881 taccgtgaca tcaacagcca gcttgaacta cagaatgtca ccaacgacac acaccttaca
     2941 ctcttgggcc ttaaaccgga caccacttat gacatcaagg tccgtgcaca taccagcaaa
     3001 ggcgccggcc ctctcagccc cagcatccag tcccggacca tgcccgtgga gcaagtgttt
     3061 gccaagaatt tccgtgtggc cgctgcgatg aagacatctg tgctgctcag ttgggaggtc
     3121 cccgactctt ataagtcagc tgtgcccttc aagatcctgt acaatgggca gagcgtggag
     3181 gtggatgggc actcgatgcg gaagctgatt gcagacctgc aacccaacac ggagtactcc
     3241 ttcgtcctga tgaatcgtgg cagtagcgcc gggggcctac agcacctggt gtccatccgc
     3301 actgccccgg acctcctacc ccagaagcca ctgcctgcct ccgcctttat agaggatggc
     3361 cgcttctccc tctccatgcc tcaagtgcag gacccctcgc tagtcaggtg gttctacatt
     3421 gtggtggtgc ccattgaccg tgtgggcggg aacttgctgg caccaagatg gaacacacca
     3481 gaggagttgg agctggacga gcttctggag gccatcgagc agggcgagga gaaacagcgg
     3541 aggcgccggc gccaagcaga gcggctgaag ccttatgtgg cggcccaagt ggatgtgctc
     3601 cctgacacct tcaccctggg ggacaagaag agctaccgcg gcttctacaa ccggcccctg
     3661 tctccggatc tgagttacca gtgcttcgtt ctcgcctccc tcaaggaacc catggaccag
     3721 aagcgctacg cctccagccc ctactcggac gagattgtag tccaggtgac gccagcacag
     3781 cagcaggagg agcccgagat gctgtgggtg acaggccctg tcctggcggt cattctcatc
     3841 atactcattg tcatcgccat cctcctgttc aagaggaaga gaacacactc cccatcatca
     3901 aaggatgagc agtcaatcgg gctgaaggac tccctgttgg cccactcttc tgaccctgtg
     3961 gagatgcgaa ggcttaacta ccagacccca ggttccagtg cccccagttg cccgaatatc
     4021 tcaagtatgc gagaccaccc gcccatcccc atcactgacc tggcagacaa tattgagcgc
     4081 ctcaaagcca acgatgggct caagttctcc caggagtatg agtccattga ccctggacag
     4141 cagttcacat gggagaattc caactcggag gtgaacaagc ccaagaaccg ctatgcaaat
     4201 gtcattgcct atgaccattc tcgagtcctc ctcacctcca ttgatggtgt tcctgggagt
     4261 gactacatca atgccaacta cattgatggc taccgaaagc agaatgccta catcgccaca
     4321 cagggtccgc tgcccgagac catgggcgat ttctggagga tggtgtggga acagcgcaca
     4381 gccacagtgg tcatgatgac caggctagag gagaaatccc gggtgaagtg tgatcagtat
     4441 tggccagtcc gtggcactga gacctatggc ctcattcagg tgaccctggt ggacactgtg
     4501 gagttggcca catacaccat gcgcaccttt gccctccata agagtggctc cagtgagaag
     4561 cgtgagctgc gtcagttcca gttcatggcc tggccagacc acggcgttcc tgagtacccc
     4621 actcccatct tggccttcct gagacgggtc aaggcctgta acccactaga tgcggggccc
     4681 atggtggtgc attgcagtgc gggtgtgggg cgcacaggct gcttcatcgt catcgacgca
     4741 atgctggagc gtatgaagca cgagaagacg gttgacatct atggccacgt gacgtgcatg
     4801 cgctcacaaa ggaactacat ggtgcagacc gaggaccagt atgtgttcat ccacgaggcc
     4861 ctgctagagg ctgccatgtg cggacacacc gaggtgctcg ctcggaacct ctatgcccac
     4921 atccagaagc taggccaagt gcctcccggg gagagcgtca cggccatgga acttgagttc
     4981 aagttgctgg ccaactccaa ggcccacacg tcgcgctttg tcagtgccaa cctgccctgc
     5041 aacaagttca agaaccgcct agtgaacatc atgccctatg agctgacccg agtgtgcttg
     5101 caacccatcc gtggtgtgga gggctcagac tacatcaatg ccagctttct agatggctac
     5161 agacagcaga aggcctacat agctacacag gggcctctgg cagagagcac cgaggacttc
     5221 tggcgcatgt tatgggagca caattccacc atcatcgtca tgctgaccaa gcttcgggag
     5281 atgggcaggg agaaatgtca ccagtactgg ccagcagagc gctccgctcg ctatcagtac
     5341 ttcgttgttg acccgatggc tgagtacaac atgccccagt atattctgcg tgaattcaaa
     5401 gtcacagacg cccgggatgg gcagtcaagg acaatccgac agttccagtt tacagactgg
     5461 ccagagcaag gagtacccaa aacaggtgaa ggcttcatcg acttcatcgg gcaggtgcac
     5521 aagacaaagg agcagtttgg ccaggatggg cccatcacgg tgcactgcag tgctggtgtg
     5581 ggccgcaccg gtgtgttcat caccctgagc attgtcctgg agcgcatgcg gtatgagggt
     5641 gtggttgaca tgttccagac cgtgaagacc ctccgcacac agcgccctgc aatggtgcag
     5701 acagaggacc aataccagct gtgctaccgt gcggccctgg aatacctcgg cagctttgat
     5761 cactatgcaa cgtaactact gctcccctct cctccgacgc tcccccgcgg ggctccggag
     5821 gggacccagc tcctctgagc cataccaacc atcgtccagc cctcctgcac ggatgctgtt
     5881 gccggcagag cacagcccac tgggatcaca gcatttcggg gaacattgcc acaccagtca
     5941 gagagcccag aacacctggg caagtaggcg gactggcagc ctggctctgg gccctcgtcc
     6001 accgggccaa gtggagcccc gcttcaagct ctctgttcag ctccgcgttc tcatgcttct
     6061 catggggtgg gaaaaggggg caaagccccc actttttata cactaggcgg ggtagactgc
     6121 ggggtcctag cctcttcctc cgactttgct tttgcaggtc tttcactgca gatggggctg
     6181 ctgtgggagt tgggacttgt ttgttttcct ttttgagttc acgttggatc ctttcttgta
     6241 caacttctgc ggaaggacac agtagtaact cgccttcctt gtgcagagct agggccctac
     6301 ctgagcaagt cggctgtggc ccgggaggca gcgtgactcc tgctgtcctc cagcctttca
     6361 gatgagatcc tattccagcc aaatgcaggg aaacacttta ttttgtttgt tttaggtttt
     6421 gtttttcctt gagagccttt ttttaggccc cacagacagt ggtgggtggg gaggcgatag
     6481 gaaacacatt ccccagtgtg catttaacat tcatagccta caaccacaga cgtgtctggg
     6541 ggagcctggc aaggcgttcc tcgtcaccat cgtgtttgca aaggttcaaa aaacaaaaat
     6601 caaaaaaaaa aaaaaacata aaaatatttt tttttaagaa aagaaataaa gattcatccc
     6661 ctggcctcta cttcagattc gaagtgggag gcaactcaat gtgcctgggg ctcgccatgg
     6721 gcccacagag tctcgctatc atccccagcg tcgcagtgtg gcaggtgttt gtaggctgtg
     6781 ggttctggcc acctcgggaa atgaatggca caggtgaggg cctgtgccac gccccacaca
     6841 cctcagggcc aagcgggggc gtggctggcc cttcaggtca ggccagtggg cctggtagca
     6901 catgtctgtc ctcagccgga cagatgcttt ctctcctggt ttgcagctgt cttcaaatcc
     6961 ccccatgacc cgctcttccc actccttcaa gttgccctca caaaccaatg tggcaagact
     7021 actggacttg tatccatggt actatactca gtcctcttat ctcagcttgc tgaggggcag
     7081 ggagagggtc tcttcctctg ggcagcacta tctagatagg taagtggggg cggggaaggg
     7141 tgcatagctg ttttagccga gggactcgat accgacgtcc ccagatatag ctaggctaag
     7201 tcaagatcaa cagtccgggg ttggtggtgt tggatgaaac attcattttt accttgtgga
     7261 tgctagtgct gtagagttca ctgttgtaca cagtctgttt tctatttgtt aagaaaaact
     7321 acagcatcat tgcatacttc ttgatggtaa taaatttgaa taatcaagat ttcttacaca
     7381 cta
//
