LOCUS       XM_006502876            6712 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            F (Ptprf), transcript variant X26, mRNA.
ACCESSION   XM_006502876
VERSION     XM_006502876.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006502876.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6712
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..6712
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 74 ESTs, 3810 long SRA reads, 24
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 13 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
     CDS             215..5104
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X26"
                     /protein_id="XP_006502939.1"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG
                     NPDPEISWFKDFLPVDPAASNGRIKQLRSGGSPIRGALQIESSEESDQGKYECVATNS
                     AGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE
                     ELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVT
                     ETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYA
                     FRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLV
                     RGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPT
                     IQVKTQQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVT
                     FDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSMPSGPPRKVEVEPL
                     NSTAVHVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRPEESE
                     DYETTISGLTPETTYSITVAAYTTKGDGARSKPKVVTTTGAVFAKNFRVAAAMKTSVL
                     LSWEVPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAGGL
                     QHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPIDRVGGN
                     LLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPDTFTLGDK
                     KSYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEPEM
                     LWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRL
                     NYQTPGSSAPSCPNISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQQFT
                     WENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQ
                     GPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVTLVDT
                     VELATYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLD
                     AGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYV
                     FIHEALLEAAMCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRF
                     VSANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQG
                     PLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEY
                     NMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFG
                     QDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQY
                     QLCYRAALEYLGSFDHYAT"
ORIGIN      
        1 cgggcgacgg cggcggcagc ggcggactga gaacggcggc ctcagcggct cgagggggga
       61 catgcagacc gacggccccc ggagaggcgg aaggagcgga ggccctggtg ccctgccctc
      121 agtgctgact gcccagcgag agtgactggt ataagcaagc agagacccgg tggattgtct
      181 taggctgtgg ctggctgtgg agctagaacc ctggatggct cccgagccag ccccagggag
      241 gaggatggtg ccccttgtgc ctgctctcgt gatgcttggt ttgatggcag gtgctcatgg
      301 cgacagcaaa cccgtctttg ttaaggtccc cgaggaccag actgggctgt cgggaggggt
      361 ggcctccttc gtgtgccaag ccacagggga acccaagcct cgaattacgt ggatgaagaa
      421 ggggaagaaa gtcagctccc agcgctttga ggtaattgag tttgacgatg gagcagggtc
      481 agtgctgcgg atccagccat tacgagtgca gcgagacgaa gccatctatg agtgcacagc
      541 cacgaacagt ctcggggaga tcaacacaag tgccaagctg tcagtgcttg aagaggacca
      601 gctgccgtct gggttcccga ctatcgacat gggacctcag ctgaaggtgg tggagaaggg
      661 tcgcactgcc accatgctgt gtgcagccgg tgggaaccca gaccctgaga tctcttggtt
      721 caaagacttc cttcctgtgg accctgctgc aagcaacggt cgtatcaaac agctgcgatc
      781 aggtggttca ccaatcagag gtgcattgca gatagagagc agcgaggagt ctgaccaagg
      841 caagtacgag tgtgtggcca ccaactctgc aggcacacgc tactcggccc ccgccaacct
      901 gtatgtgcga gtgcgtcgcg tggctcctcg tttctccatc cctcccagca gccaagaggt
      961 gatgccgggc ggcagcgtga atctcacatg tgtggcagtg ggcgcgccca tgccgtatgt
     1021 gaaatggatg atgggcgccg aggaactgac caaagaggat gagatgccag tcggccgaaa
     1081 tgttctggag ctcagcaatg tcatgcgatc tgccaactat acctgtgtgg ccatctcttc
     1141 attaggcatg atagaagcca cggcccaggt cacagtaaaa gctctgccaa agcctccaat
     1201 tgatcttgtg gtgacagaga caaccgccac cagtgttact ctgacatggg actctggaaa
     1261 taccgagcct gtgtccttct acggcatcca gtaccgcgca gctggcacag acggcccctt
     1321 ccaggaagtg gatggtgtgg ccagcacccg atacagcatt ggtggcctca gccccttttc
     1381 ggaatatgct ttccgtgtgt tggctgttaa cagcattggg cgaggaccac ccagtgaggc
     1441 agtgcgagca cgcacggggg agcaggcacc ctccagccct ccgcgccgtg tgcaggctcg
     1501 aatgcttagc gccagcacca tgctggtcca gtgggaacca cctgaagagc ccaatggcct
     1561 ggtacgggga tatcgcgtct actatacccc agattcccga cgccctttga gcgcctggca
     1621 caagcataac actgacgcag gactccttac caccgtgggc agcctgctac ctggcatcac
     1681 ctacagcctc cgagtccttg ccttcactgc tgtgggtgac ggcccaccca gccccaccat
     1741 ccaagtcaag acacagcagg gagtgcctgc acagcctgcg gacttccagg ctaacgctga
     1801 gtcggacacc aggatccagc tctcgtggct gctgcccccg caggagcgga tcgtcaagta
     1861 tgagctggtg tactgggcag ccgaggatga gggccagcag cacaaggtga ccttcgaccc
     1921 cacctcctcc tacactctgg aggacctgaa gcctgacaca ttgtaccact tccagctggc
     1981 tgcccgttca gatttggggg tgggcgtctt cacgcccacc gtagaggccc gtacagcaca
     2041 gtccatgcct agcgggccac cacggaaggt agaggttgag cctctgaact ccactgctgt
     2101 gcatgtctcc tggaagctgc ccgtccccaa caagcagcac ggacagattc gtggctacca
     2161 ggtcacctat gtgcggttgg agaatggtga gccccgaggc caacccatca tccaggatgt
     2221 catgctggct gaggctcagt ggagaccaga ggagtccgag gactatgaga ccaccatcag
     2281 cggcctcacc cccgagacca cctactccat caccgtcgct gcctacacca ctaaggggga
     2341 tggtgcccga agcaagccca aggtggttac tacaacaggg gcagtgtttg ccaagaattt
     2401 ccgtgtggcc gctgcgatga agacatctgt gctgctcagt tgggaggtcc ccgactctta
     2461 taagtcagct gtgcccttca agatcctgta caatgggcag agcgtggagg tggatgggca
     2521 ctcgatgcgg aagctgattg cagacctgca acccaacacg gagtactcct tcgtcctgat
     2581 gaatcgtggc agtagcgccg ggggcctaca gcacctggtg tccatccgca ctgccccgga
     2641 cctcctaccc cagaagccac tgcctgcctc cgcctttata gaggatggcc gcttctccct
     2701 ctccatgcct caagtgcagg acccctcgct agtcaggtgg ttctacattg tggtggtgcc
     2761 cattgaccgt gtgggcggga acttgctggc accaagatgg aacacaccag aggagttgga
     2821 gctggacgag cttctggagg ccatcgagca gggcgaggag aaacagcgga ggcgccggcg
     2881 ccaagcagag cggctgaagc cttatgtggc ggcccaagtg gatgtgctcc ctgacacctt
     2941 caccctgggg gacaagaaga gctaccgcgg cttctacaac cggcccctgt ctccggatct
     3001 gagttaccag tgcttcgttc tcgcctccct caaggaaccc atggaccaga agcgctacgc
     3061 ctccagcccc tactcggacg agattgtagt ccaggtgacg ccagcacagc agcaggagga
     3121 gcccgagatg ctgtgggtga caggccctgt cctggcggtc attctcatca tactcattgt
     3181 catcgccatc ctcctgttca agaggaagag aacacactcc ccatcatcaa aggatgagca
     3241 gtcaatcggg ctgaaggact ccctgttggc ccactcttct gaccctgtgg agatgcgaag
     3301 gcttaactac cagaccccag gttccagtgc ccccagttgc ccgaatatct caagtatgcg
     3361 agaccacccg cccatcccca tcactgacct ggcagacaat attgagcgcc tcaaagccaa
     3421 cgatgggctc aagttctccc aggagtatga gtccattgac cctggacagc agttcacatg
     3481 ggagaattcc aactcggagg tgaacaagcc caagaaccgc tatgcaaatg tcattgccta
     3541 tgaccattct cgagtcctcc tcacctccat tgatggtgtt cctgggagtg actacatcaa
     3601 tgccaactac attgatggct accgaaagca gaatgcctac atcgccacac agggtccgct
     3661 gcccgagacc atgggcgatt tctggaggat ggtgtgggaa cagcgcacag ccacagtggt
     3721 catgatgacc aggctagagg agaaatcccg ggtgaagtgt gatcagtatt ggccagtccg
     3781 tggcactgag acctatggcc tcattcaggt gaccctggtg gacactgtgg agttggccac
     3841 atacaccatg cgcacctttg ccctccataa gagtggctcc agtgagaagc gtgagctgcg
     3901 tcagttccag ttcatggcct ggccagacca cggcgttcct gagtacccca ctcccatctt
     3961 ggccttcctg agacgggtca aggcctgtaa cccactagat gcggggccca tggtggtgca
     4021 ttgcagtgcg ggtgtggggc gcacaggctg cttcatcgtc atcgacgcaa tgctggagcg
     4081 tatgaagcac gagaagacgg ttgacatcta tggccacgtg acgtgcatgc gctcacaaag
     4141 gaactacatg gtgcagaccg aggaccagta tgtgttcatc cacgaggccc tgctagaggc
     4201 tgccatgtgc ggacacaccg aggtgctcgc tcggaacctc tatgcccaca tccagaagct
     4261 aggccaagtg cctcccgggg agagcgtcac ggccatggaa cttgagttca agttgctggc
     4321 caactccaag gcccacacgt cgcgctttgt cagtgccaac ctgccctgca acaagttcaa
     4381 gaaccgccta gtgaacatca tgccctatga gctgacccga gtgtgcttgc aacccatccg
     4441 tggtgtggag ggctcagact acatcaatgc cagctttcta gatggctaca gacagcagaa
     4501 ggcctacata gctacacagg ggcctctggc agagagcacc gaggacttct ggcgcatgtt
     4561 atgggagcac aattccacca tcatcgtcat gctgaccaag cttcgggaga tgggcaggga
     4621 gaaatgtcac cagtactggc cagcagagcg ctccgctcgc tatcagtact tcgttgttga
     4681 cccgatggct gagtacaaca tgccccagta tattctgcgt gaattcaaag tcacagacgc
     4741 ccgggatggg cagtcaagga caatccgaca gttccagttt acagactggc cagagcaagg
     4801 agtacccaaa acaggtgaag gcttcatcga cttcatcggg caggtgcaca agacaaagga
     4861 gcagtttggc caggatgggc ccatcacggt gcactgcagt gctggtgtgg gccgcaccgg
     4921 tgtgttcatc accctgagca ttgtcctgga gcgcatgcgg tatgagggtg tggttgacat
     4981 gttccagacc gtgaagaccc tccgcacaca gcgccctgca atggtgcaga cagaggacca
     5041 ataccagctg tgctaccgtg cggccctgga atacctcggc agctttgatc actatgcaac
     5101 gtaactactg ctcccctctc ctccgacgct cccccgcggg gctccggagg ggacccagct
     5161 cctctgagcc ataccaacca tcgtccagcc ctcctgcacg gatgctgttg ccggcagagc
     5221 acagcccact gggatcacag catttcgggg aacattgcca caccagtcag agagcccaga
     5281 acacctgggc aagtaggcgg actggcagcc tggctctggg ccctcgtcca ccgggccaag
     5341 tggagccccg cttcaagctc tctgttcagc tccgcgttct catgcttctc atggggtggg
     5401 aaaagggggc aaagccccca ctttttatac actaggcggg gtagactgcg gggtcctagc
     5461 ctcttcctcc gactttgctt ttgcaggtct ttcactgcag atggggctgc tgtgggagtt
     5521 gggacttgtt tgttttcctt tttgagttca cgttggatcc tttcttgtac aacttctgcg
     5581 gaaggacaca gtagtaactc gccttccttg tgcagagcta gggccctacc tgagcaagtc
     5641 ggctgtggcc cgggaggcag cgtgactcct gctgtcctcc agcctttcag atgagatcct
     5701 attccagcca aatgcaggga aacactttat tttgtttgtt ttaggttttg tttttccttg
     5761 agagcctttt tttaggcccc acagacagtg gtgggtgggg aggcgatagg aaacacattc
     5821 cccagtgtgc atttaacatt catagcctac aaccacagac gtgtctgggg gagcctggca
     5881 aggcgttcct cgtcaccatc gtgtttgcaa aggttcaaaa aacaaaaatc aaaaaaaaaa
     5941 aaaaacataa aaatattttt ttttaagaaa agaaataaag attcatcccc tggcctctac
     6001 ttcagattcg aagtgggagg caactcaatg tgcctggggc tcgccatggg cccacagagt
     6061 ctcgctatca tccccagcgt cgcagtgtgg caggtgtttg taggctgtgg gttctggcca
     6121 cctcgggaaa tgaatggcac aggtgagggc ctgtgccacg ccccacacac ctcagggcca
     6181 agcgggggcg tggctggccc ttcaggtcag gccagtgggc ctggtagcac atgtctgtcc
     6241 tcagccggac agatgctttc tctcctggtt tgcagctgtc ttcaaatccc cccatgaccc
     6301 gctcttccca ctccttcaag ttgccctcac aaaccaatgt ggcaagacta ctggacttgt
     6361 atccatggta ctatactcag tcctcttatc tcagcttgct gaggggcagg gagagggtct
     6421 cttcctctgg gcagcactat ctagataggt aagtgggggc ggggaagggt gcatagctgt
     6481 tttagccgag ggactcgata ccgacgtccc cagatatagc taggctaagt caagatcaac
     6541 agtccggggt tggtggtgtt ggatgaaaca ttcattttta ccttgtggat gctagtgctg
     6601 tagagttcac tgttgtacac agtctgtttt ctatttgtta agaaaaacta cagcatcatt
     6661 gcatacttct tgatggtaat aaatttgaat aatcaagatt tcttacacac ta
//
