LOCUS       XM_006502874            7018 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            F (Ptprf), transcript variant X17, mRNA.
ACCESSION   XM_006502874
VERSION     XM_006502874.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006502874.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7018
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7018
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 77 ESTs, 3656 long SRA reads, 23
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 13 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
     CDS             215..5410
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X17"
                     /protein_id="XP_006502937.1"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG
                     NPDPEISWFKDFLPVDPAASNGRIKQLRSGGSPIRGALQIESSEESDQGKYECVATNS
                     AGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE
                     ELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVT
                     ETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYA
                     FRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLV
                     RGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPT
                     IQVKTQQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVT
                     FDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSTPSAPPQKVTCVST
                     GSTTVRVSWVPPPADSRNGIITQYSVAYEAVDGEDRKRHVVDGISREHSSWDLLGLEK
                     WTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVSWKLPVP
                     NKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRPEESEDYETTISGLTPETT
                     YSITVAAYTTKGDGARSKPKVVTTTGAVFAKNFRVAAAMKTSVLLSWEVPDSYKSAVP
                     FKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPDLLP
                     QKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPIDRVGGNLLAPRWNTPEELEL
                     DELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPDTFTLGDKKSYRGFYNRPLSPD
                     LSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEPEMLWVTGPVLAVILII
                     LIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRLNYQTPGSSAPSCPN
                     ISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNSEVNKPKNR
                     YANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMV
                     WEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVTLVDTVELATYTMRTFALH
                     KSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGR
                     TGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAMCGH
                     TEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRFVSANLPCNKFKNRL
                     VNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLW
                     EHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTD
                     ARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVG
                     RTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSF
                     DHYAT"
ORIGIN      
        1 cgggcgacgg cggcggcagc ggcggactga gaacggcggc ctcagcggct cgagggggga
       61 catgcagacc gacggccccc ggagaggcgg aaggagcgga ggccctggtg ccctgccctc
      121 agtgctgact gcccagcgag agtgactggt ataagcaagc agagacccgg tggattgtct
      181 taggctgtgg ctggctgtgg agctagaacc ctggatggct cccgagccag ccccagggag
      241 gaggatggtg ccccttgtgc ctgctctcgt gatgcttggt ttgatggcag gtgctcatgg
      301 cgacagcaaa cccgtctttg ttaaggtccc cgaggaccag actgggctgt cgggaggggt
      361 ggcctccttc gtgtgccaag ccacagggga acccaagcct cgaattacgt ggatgaagaa
      421 ggggaagaaa gtcagctccc agcgctttga ggtaattgag tttgacgatg gagcagggtc
      481 agtgctgcgg atccagccat tacgagtgca gcgagacgaa gccatctatg agtgcacagc
      541 cacgaacagt ctcggggaga tcaacacaag tgccaagctg tcagtgcttg aagaggacca
      601 gctgccgtct gggttcccga ctatcgacat gggacctcag ctgaaggtgg tggagaaggg
      661 tcgcactgcc accatgctgt gtgcagccgg tgggaaccca gaccctgaga tctcttggtt
      721 caaagacttc cttcctgtgg accctgctgc aagcaacggt cgtatcaaac agctgcgatc
      781 aggtggttca ccaatcagag gtgcattgca gatagagagc agcgaggagt ctgaccaagg
      841 caagtacgag tgtgtggcca ccaactctgc aggcacacgc tactcggccc ccgccaacct
      901 gtatgtgcga gtgcgtcgcg tggctcctcg tttctccatc cctcccagca gccaagaggt
      961 gatgccgggc ggcagcgtga atctcacatg tgtggcagtg ggcgcgccca tgccgtatgt
     1021 gaaatggatg atgggcgccg aggaactgac caaagaggat gagatgccag tcggccgaaa
     1081 tgttctggag ctcagcaatg tcatgcgatc tgccaactat acctgtgtgg ccatctcttc
     1141 attaggcatg atagaagcca cggcccaggt cacagtaaaa gctctgccaa agcctccaat
     1201 tgatcttgtg gtgacagaga caaccgccac cagtgttact ctgacatggg actctggaaa
     1261 taccgagcct gtgtccttct acggcatcca gtaccgcgca gctggcacag acggcccctt
     1321 ccaggaagtg gatggtgtgg ccagcacccg atacagcatt ggtggcctca gccccttttc
     1381 ggaatatgct ttccgtgtgt tggctgttaa cagcattggg cgaggaccac ccagtgaggc
     1441 agtgcgagca cgcacggggg agcaggcacc ctccagccct ccgcgccgtg tgcaggctcg
     1501 aatgcttagc gccagcacca tgctggtcca gtgggaacca cctgaagagc ccaatggcct
     1561 ggtacgggga tatcgcgtct actatacccc agattcccga cgccctttga gcgcctggca
     1621 caagcataac actgacgcag gactccttac caccgtgggc agcctgctac ctggcatcac
     1681 ctacagcctc cgagtccttg ccttcactgc tgtgggtgac ggcccaccca gccccaccat
     1741 ccaagtcaag acacagcagg gagtgcctgc acagcctgcg gacttccagg ctaacgctga
     1801 gtcggacacc aggatccagc tctcgtggct gctgcccccg caggagcgga tcgtcaagta
     1861 tgagctggtg tactgggcag ccgaggatga gggccagcag cacaaggtga ccttcgaccc
     1921 cacctcctcc tacactctgg aggacctgaa gcctgacaca ttgtaccact tccagctggc
     1981 tgcccgttca gatttggggg tgggcgtctt cacgcccacc gtagaggccc gtacagcaca
     2041 gtccacccca tcagcccctc cccagaaggt gacatgtgtg agcacgggct ccaccacggt
     2101 ccgggtaagt tgggttccac cgccggccga cagccgcaac ggcattatca cccagtactc
     2161 cgtggcctat gaggcagtgg acggcgaaga ccgtaagcga catgtggtgg atggcatcag
     2221 ccgtgagcat tccagctggg acctgctggg cctggagaag tggacggagt accgggtgtg
     2281 ggtgcgggca cacacagatg tgggccctgg ccctgagagc agcccggtgc tggtgcgcac
     2341 cgatgaggac gtgcctagcg ggccaccacg gaaggtagag gttgagcctc tgaactccac
     2401 tgctgtgcat gtctcctgga agctgcccgt ccccaacaag cagcacggac agattcgtgg
     2461 ctaccaggtc acctatgtgc ggttggagaa tggtgagccc cgaggccaac ccatcatcca
     2521 ggatgtcatg ctggctgagg ctcagtggag accagaggag tccgaggact atgagaccac
     2581 catcagcggc ctcacccccg agaccaccta ctccatcacc gtcgctgcct acaccactaa
     2641 gggggatggt gcccgaagca agcccaaggt ggttactaca acaggggcag tgtttgccaa
     2701 gaatttccgt gtggccgctg cgatgaagac atctgtgctg ctcagttggg aggtccccga
     2761 ctcttataag tcagctgtgc ccttcaagat cctgtacaat gggcagagcg tggaggtgga
     2821 tgggcactcg atgcggaagc tgattgcaga cctgcaaccc aacacggagt actccttcgt
     2881 cctgatgaat cgtggcagta gcgccggggg cctacagcac ctggtgtcca tccgcactgc
     2941 cccggacctc ctaccccaga agccactgcc tgcctccgcc tttatagagg atggccgctt
     3001 ctccctctcc atgcctcaag tgcaggaccc ctcgctagtc aggtggttct acattgtggt
     3061 ggtgcccatt gaccgtgtgg gcgggaactt gctggcacca agatggaaca caccagagga
     3121 gttggagctg gacgagcttc tggaggccat cgagcagggc gaggagaaac agcggaggcg
     3181 ccggcgccaa gcagagcggc tgaagcctta tgtggcggcc caagtggatg tgctccctga
     3241 caccttcacc ctgggggaca agaagagcta ccgcggcttc tacaaccggc ccctgtctcc
     3301 ggatctgagt taccagtgct tcgttctcgc ctccctcaag gaacccatgg accagaagcg
     3361 ctacgcctcc agcccctact cggacgagat tgtagtccag gtgacgccag cacagcagca
     3421 ggaggagccc gagatgctgt gggtgacagg ccctgtcctg gcggtcattc tcatcatact
     3481 cattgtcatc gccatcctcc tgttcaagag gaagagaaca cactccccat catcaaagga
     3541 tgagcagtca atcgggctga aggactccct gttggcccac tcttctgacc ctgtggagat
     3601 gcgaaggctt aactaccaga ccccaggttc cagtgccccc agttgcccga atatctcaag
     3661 tatgcgagac cacccgccca tccccatcac tgacctggca gacaatattg agcgcctcaa
     3721 agccaacgat gggctcaagt tctcccagga gtatgagtcc attgaccctg gacagcagtt
     3781 cacatgggag aattccaact cggaggtgaa caagcccaag aaccgctatg caaatgtcat
     3841 tgcctatgac cattctcgag tcctcctcac ctccattgat ggtgttcctg ggagtgacta
     3901 catcaatgcc aactacattg atggctaccg aaagcagaat gcctacatcg ccacacaggg
     3961 tccgctgccc gagaccatgg gcgatttctg gaggatggtg tgggaacagc gcacagccac
     4021 agtggtcatg atgaccaggc tagaggagaa atcccgggtg aagtgtgatc agtattggcc
     4081 agtccgtggc actgagacct atggcctcat tcaggtgacc ctggtggaca ctgtggagtt
     4141 ggccacatac accatgcgca cctttgccct ccataagagt ggctccagtg agaagcgtga
     4201 gctgcgtcag ttccagttca tggcctggcc agaccacggc gttcctgagt accccactcc
     4261 catcttggcc ttcctgagac gggtcaaggc ctgtaaccca ctagatgcgg ggcccatggt
     4321 ggtgcattgc agtgcgggtg tggggcgcac aggctgcttc atcgtcatcg acgcaatgct
     4381 ggagcgtatg aagcacgaga agacggttga catctatggc cacgtgacgt gcatgcgctc
     4441 acaaaggaac tacatggtgc agaccgagga ccagtatgtg ttcatccacg aggccctgct
     4501 agaggctgcc atgtgcggac acaccgaggt gctcgctcgg aacctctatg cccacatcca
     4561 gaagctaggc caagtgcctc ccggggagag cgtcacggcc atggaacttg agttcaagtt
     4621 gctggccaac tccaaggccc acacgtcgcg ctttgtcagt gccaacctgc cctgcaacaa
     4681 gttcaagaac cgcctagtga acatcatgcc ctatgagctg acccgagtgt gcttgcaacc
     4741 catccgtggt gtggagggct cagactacat caatgccagc tttctagatg gctacagaca
     4801 gcagaaggcc tacatagcta cacaggggcc tctggcagag agcaccgagg acttctggcg
     4861 catgttatgg gagcacaatt ccaccatcat cgtcatgctg accaagcttc gggagatggg
     4921 cagggagaaa tgtcaccagt actggccagc agagcgctcc gctcgctatc agtacttcgt
     4981 tgttgacccg atggctgagt acaacatgcc ccagtatatt ctgcgtgaat tcaaagtcac
     5041 agacgcccgg gatgggcagt caaggacaat ccgacagttc cagtttacag actggccaga
     5101 gcaaggagta cccaaaacag gtgaaggctt catcgacttc atcgggcagg tgcacaagac
     5161 aaaggagcag tttggccagg atgggcccat cacggtgcac tgcagtgctg gtgtgggccg
     5221 caccggtgtg ttcatcaccc tgagcattgt cctggagcgc atgcggtatg agggtgtggt
     5281 tgacatgttc cagaccgtga agaccctccg cacacagcgc cctgcaatgg tgcagacaga
     5341 ggaccaatac cagctgtgct accgtgcggc cctggaatac ctcggcagct ttgatcacta
     5401 tgcaacgtaa ctactgctcc cctctcctcc gacgctcccc cgcggggctc cggaggggac
     5461 ccagctcctc tgagccatac caaccatcgt ccagccctcc tgcacggatg ctgttgccgg
     5521 cagagcacag cccactggga tcacagcatt tcggggaaca ttgccacacc agtcagagag
     5581 cccagaacac ctgggcaagt aggcggactg gcagcctggc tctgggccct cgtccaccgg
     5641 gccaagtgga gccccgcttc aagctctctg ttcagctccg cgttctcatg cttctcatgg
     5701 ggtgggaaaa gggggcaaag cccccacttt ttatacacta ggcggggtag actgcggggt
     5761 cctagcctct tcctccgact ttgcttttgc aggtctttca ctgcagatgg ggctgctgtg
     5821 ggagttggga cttgtttgtt ttcctttttg agttcacgtt ggatcctttc ttgtacaact
     5881 tctgcggaag gacacagtag taactcgcct tccttgtgca gagctagggc cctacctgag
     5941 caagtcggct gtggcccggg aggcagcgtg actcctgctg tcctccagcc tttcagatga
     6001 gatcctattc cagccaaatg cagggaaaca ctttattttg tttgttttag gttttgtttt
     6061 tccttgagag ccttttttta ggccccacag acagtggtgg gtggggaggc gataggaaac
     6121 acattcccca gtgtgcattt aacattcata gcctacaacc acagacgtgt ctgggggagc
     6181 ctggcaaggc gttcctcgtc accatcgtgt ttgcaaaggt tcaaaaaaca aaaatcaaaa
     6241 aaaaaaaaaa acataaaaat attttttttt aagaaaagaa ataaagattc atcccctggc
     6301 ctctacttca gattcgaagt gggaggcaac tcaatgtgcc tggggctcgc catgggccca
     6361 cagagtctcg ctatcatccc cagcgtcgca gtgtggcagg tgtttgtagg ctgtgggttc
     6421 tggccacctc gggaaatgaa tggcacaggt gagggcctgt gccacgcccc acacacctca
     6481 gggccaagcg ggggcgtggc tggcccttca ggtcaggcca gtgggcctgg tagcacatgt
     6541 ctgtcctcag ccggacagat gctttctctc ctggtttgca gctgtcttca aatcccccca
     6601 tgacccgctc ttcccactcc ttcaagttgc cctcacaaac caatgtggca agactactgg
     6661 acttgtatcc atggtactat actcagtcct cttatctcag cttgctgagg ggcagggaga
     6721 gggtctcttc ctctgggcag cactatctag ataggtaagt gggggcgggg aagggtgcat
     6781 agctgtttta gccgagggac tcgataccga cgtccccaga tatagctagg ctaagtcaag
     6841 atcaacagtc cggggttggt ggtgttggat gaaacattca tttttacctt gtggatgcta
     6901 gtgctgtaga gttcactgtt gtacacagtc tgttttctat ttgttaagaa aaactacagc
     6961 atcattgcat acttcttgat ggtaataaat ttgaataatc aagatttctt acacacta
//
