LOCUS       XM_006502870            7537 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            F (Ptprf), transcript variant X7, mRNA.
ACCESSION   XM_006502870
VERSION     XM_006502870.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006502870.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7537
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7537
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 mRNAs, 90 ESTs, 4015 long SRA reads, 30
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 16 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
     CDS             215..5929
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X7"
                     /protein_id="XP_006502933.1"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG
                     NPDPEISWFKDFLPVDPAASNGRIKQLRSGGSPIRGALQIESSEESDQGKYECVATNS
                     AGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE
                     ELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVT
                     ETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYA
                     FRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLV
                     RGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPT
                     IQVKTQQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVT
                     FDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSTPSAPPQKVTCVST
                     GSTTVRVSWVPPPADSRNGIITQYSVAYEAVDGEDRKRHVVDGISREHSSWDLLGLEK
                     WTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVSWKLPVP
                     NKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQETTISGLTPETTYSITVAAYT
                     TKGDGARSKPKVVTTTGAVPGRPTMMVSTTAMHTALLQWHPPKELPGELLGYRLQYRR
                     ADEARPNTIDFGKDDQHFTVTGLHKGATYVFRLAAKNRAGPGEEFEKEITTPEDVPSG
                     FPQNLRVTGLTTSTTELTWDPPVLAERNGHITNYTVVYRDINSQLELQNVTNDTHLTL
                     LGLKPDTTYDIKVRAHTSKGAGPLSPSIQSRTMPVEQVFAKNFRVAAAMKTSVLLSWE
                     VPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAGGLQHLV
                     SIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPIDRVGGNLLAP
                     RWNTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPDTFTLGDKKSYR
                     GFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEPEMLWVT
                     GPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRLNYQT
                     PGMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNSEVNKPKNRY
                     ANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVW
                     EQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVTLVDTVELATYTMRTFALHK
                     SGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRT
                     GCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAMCGHT
                     EVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRFVSANLPCNKFKNRLV
                     NIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWE
                     HNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDA
                     RDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR
                     TGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFD
                     HYAT"
ORIGIN      
        1 cgggcgacgg cggcggcagc ggcggactga gaacggcggc ctcagcggct cgagggggga
       61 catgcagacc gacggccccc ggagaggcgg aaggagcgga ggccctggtg ccctgccctc
      121 agtgctgact gcccagcgag agtgactggt ataagcaagc agagacccgg tggattgtct
      181 taggctgtgg ctggctgtgg agctagaacc ctggatggct cccgagccag ccccagggag
      241 gaggatggtg ccccttgtgc ctgctctcgt gatgcttggt ttgatggcag gtgctcatgg
      301 cgacagcaaa cccgtctttg ttaaggtccc cgaggaccag actgggctgt cgggaggggt
      361 ggcctccttc gtgtgccaag ccacagggga acccaagcct cgaattacgt ggatgaagaa
      421 ggggaagaaa gtcagctccc agcgctttga ggtaattgag tttgacgatg gagcagggtc
      481 agtgctgcgg atccagccat tacgagtgca gcgagacgaa gccatctatg agtgcacagc
      541 cacgaacagt ctcggggaga tcaacacaag tgccaagctg tcagtgcttg aagaggacca
      601 gctgccgtct gggttcccga ctatcgacat gggacctcag ctgaaggtgg tggagaaggg
      661 tcgcactgcc accatgctgt gtgcagccgg tgggaaccca gaccctgaga tctcttggtt
      721 caaagacttc cttcctgtgg accctgctgc aagcaacggt cgtatcaaac agctgcgatc
      781 aggtggttca ccaatcagag gtgcattgca gatagagagc agcgaggagt ctgaccaagg
      841 caagtacgag tgtgtggcca ccaactctgc aggcacacgc tactcggccc ccgccaacct
      901 gtatgtgcga gtgcgtcgcg tggctcctcg tttctccatc cctcccagca gccaagaggt
      961 gatgccgggc ggcagcgtga atctcacatg tgtggcagtg ggcgcgccca tgccgtatgt
     1021 gaaatggatg atgggcgccg aggaactgac caaagaggat gagatgccag tcggccgaaa
     1081 tgttctggag ctcagcaatg tcatgcgatc tgccaactat acctgtgtgg ccatctcttc
     1141 attaggcatg atagaagcca cggcccaggt cacagtaaaa gctctgccaa agcctccaat
     1201 tgatcttgtg gtgacagaga caaccgccac cagtgttact ctgacatggg actctggaaa
     1261 taccgagcct gtgtccttct acggcatcca gtaccgcgca gctggcacag acggcccctt
     1321 ccaggaagtg gatggtgtgg ccagcacccg atacagcatt ggtggcctca gccccttttc
     1381 ggaatatgct ttccgtgtgt tggctgttaa cagcattggg cgaggaccac ccagtgaggc
     1441 agtgcgagca cgcacggggg agcaggcacc ctccagccct ccgcgccgtg tgcaggctcg
     1501 aatgcttagc gccagcacca tgctggtcca gtgggaacca cctgaagagc ccaatggcct
     1561 ggtacgggga tatcgcgtct actatacccc agattcccga cgccctttga gcgcctggca
     1621 caagcataac actgacgcag gactccttac caccgtgggc agcctgctac ctggcatcac
     1681 ctacagcctc cgagtccttg ccttcactgc tgtgggtgac ggcccaccca gccccaccat
     1741 ccaagtcaag acacagcagg gagtgcctgc acagcctgcg gacttccagg ctaacgctga
     1801 gtcggacacc aggatccagc tctcgtggct gctgcccccg caggagcgga tcgtcaagta
     1861 tgagctggtg tactgggcag ccgaggatga gggccagcag cacaaggtga ccttcgaccc
     1921 cacctcctcc tacactctgg aggacctgaa gcctgacaca ttgtaccact tccagctggc
     1981 tgcccgttca gatttggggg tgggcgtctt cacgcccacc gtagaggccc gtacagcaca
     2041 gtccacccca tcagcccctc cccagaaggt gacatgtgtg agcacgggct ccaccacggt
     2101 ccgggtaagt tgggttccac cgccggccga cagccgcaac ggcattatca cccagtactc
     2161 cgtggcctat gaggcagtgg acggcgaaga ccgtaagcga catgtggtgg atggcatcag
     2221 ccgtgagcat tccagctggg acctgctggg cctggagaag tggacggagt accgggtgtg
     2281 ggtgcgggca cacacagatg tgggccctgg ccctgagagc agcccggtgc tggtgcgcac
     2341 cgatgaggac gtgcctagcg ggccaccacg gaaggtagag gttgagcctc tgaactccac
     2401 tgctgtgcat gtctcctgga agctgcccgt ccccaacaag cagcacggac agattcgtgg
     2461 ctaccaggtc acctatgtgc ggttggagaa tggtgagccc cgaggccaac ccatcatcca
     2521 ggatgtcatg ctggctgagg ctcaggagac caccatcagc ggcctcaccc ccgagaccac
     2581 ctactccatc accgtcgctg cctacaccac taagggggat ggtgcccgaa gcaagcccaa
     2641 ggtggttact acaacagggg cagtcccagg acggcccacc atgatggtca gcaccacggc
     2701 catgcacacc gcgctgctgc agtggcaccc acccaaggag ctgcctggag agctgctggg
     2761 ctaccgtctc caataccggc gggccgacga ggcgcggccc aacaccatag actttggcaa
     2821 ggatgaccaa cattttacag tcaccggcct gcacaaaggg gccacctacg tcttccggct
     2881 cgctgccaag aaccgggctg gcccaggaga agagtttgag aaagagatca ccacccccga
     2941 ggatgtgccc agtggctttc ctcaaaatct tcgagtgaca ggactgacca catctaccac
     3001 ggaactgacc tgggacccgc cggtgctggc ggagaggaat ggtcacatca ccaactatac
     3061 tgtggtctac cgtgacatca acagccagct tgaactacag aatgtcacca acgacacaca
     3121 ccttacactc ttgggcctta aaccggacac cacttatgac atcaaggtcc gtgcacatac
     3181 cagcaaaggc gccggccctc tcagccccag catccagtcc cggaccatgc ccgtggagca
     3241 agtgtttgcc aagaatttcc gtgtggccgc tgcgatgaag acatctgtgc tgctcagttg
     3301 ggaggtcccc gactcttata agtcagctgt gcccttcaag atcctgtaca atgggcagag
     3361 cgtggaggtg gatgggcact cgatgcggaa gctgattgca gacctgcaac ccaacacgga
     3421 gtactccttc gtcctgatga atcgtggcag tagcgccggg ggcctacagc acctggtgtc
     3481 catccgcact gccccggacc tcctacccca gaagccactg cctgcctccg cctttataga
     3541 ggatggccgc ttctccctct ccatgcctca agtgcaggac ccctcgctag tcaggtggtt
     3601 ctacattgtg gtggtgccca ttgaccgtgt gggcgggaac ttgctggcac caagatggaa
     3661 cacaccagag gagttggagc tggacgagct tctggaggcc atcgagcagg gcgaggagaa
     3721 acagcggagg cgccggcgcc aagcagagcg gctgaagcct tatgtggcgg cccaagtgga
     3781 tgtgctccct gacaccttca ccctggggga caagaagagc taccgcggct tctacaaccg
     3841 gcccctgtct ccggatctga gttaccagtg cttcgttctc gcctccctca aggaacccat
     3901 ggaccagaag cgctacgcct ccagccccta ctcggacgag attgtagtcc aggtgacgcc
     3961 agcacagcag caggaggagc ccgagatgct gtgggtgaca ggccctgtcc tggcggtcat
     4021 tctcatcata ctcattgtca tcgccatcct cctgttcaag aggaagagaa cacactcccc
     4081 atcatcaaag gatgagcagt caatcgggct gaaggactcc ctgttggccc actcttctga
     4141 ccctgtggag atgcgaaggc ttaactacca gaccccaggt atgcgagacc acccgcccat
     4201 ccccatcact gacctggcag acaatattga gcgcctcaaa gccaacgatg ggctcaagtt
     4261 ctcccaggag tatgagtcca ttgaccctgg acagcagttc acatgggaga attccaactc
     4321 ggaggtgaac aagcccaaga accgctatgc aaatgtcatt gcctatgacc attctcgagt
     4381 cctcctcacc tccattgatg gtgttcctgg gagtgactac atcaatgcca actacattga
     4441 tggctaccga aagcagaatg cctacatcgc cacacagggt ccgctgcccg agaccatggg
     4501 cgatttctgg aggatggtgt gggaacagcg cacagccaca gtggtcatga tgaccaggct
     4561 agaggagaaa tcccgggtga agtgtgatca gtattggcca gtccgtggca ctgagaccta
     4621 tggcctcatt caggtgaccc tggtggacac tgtggagttg gccacataca ccatgcgcac
     4681 ctttgccctc cataagagtg gctccagtga gaagcgtgag ctgcgtcagt tccagttcat
     4741 ggcctggcca gaccacggcg ttcctgagta ccccactccc atcttggcct tcctgagacg
     4801 ggtcaaggcc tgtaacccac tagatgcggg gcccatggtg gtgcattgca gtgcgggtgt
     4861 ggggcgcaca ggctgcttca tcgtcatcga cgcaatgctg gagcgtatga agcacgagaa
     4921 gacggttgac atctatggcc acgtgacgtg catgcgctca caaaggaact acatggtgca
     4981 gaccgaggac cagtatgtgt tcatccacga ggccctgcta gaggctgcca tgtgcggaca
     5041 caccgaggtg ctcgctcgga acctctatgc ccacatccag aagctaggcc aagtgcctcc
     5101 cggggagagc gtcacggcca tggaacttga gttcaagttg ctggccaact ccaaggccca
     5161 cacgtcgcgc tttgtcagtg ccaacctgcc ctgcaacaag ttcaagaacc gcctagtgaa
     5221 catcatgccc tatgagctga cccgagtgtg cttgcaaccc atccgtggtg tggagggctc
     5281 agactacatc aatgccagct ttctagatgg ctacagacag cagaaggcct acatagctac
     5341 acaggggcct ctggcagaga gcaccgagga cttctggcgc atgttatggg agcacaattc
     5401 caccatcatc gtcatgctga ccaagcttcg ggagatgggc agggagaaat gtcaccagta
     5461 ctggccagca gagcgctccg ctcgctatca gtacttcgtt gttgacccga tggctgagta
     5521 caacatgccc cagtatattc tgcgtgaatt caaagtcaca gacgcccggg atgggcagtc
     5581 aaggacaatc cgacagttcc agtttacaga ctggccagag caaggagtac ccaaaacagg
     5641 tgaaggcttc atcgacttca tcgggcaggt gcacaagaca aaggagcagt ttggccagga
     5701 tgggcccatc acggtgcact gcagtgctgg tgtgggccgc accggtgtgt tcatcaccct
     5761 gagcattgtc ctggagcgca tgcggtatga gggtgtggtt gacatgttcc agaccgtgaa
     5821 gaccctccgc acacagcgcc ctgcaatggt gcagacagag gaccaatacc agctgtgcta
     5881 ccgtgcggcc ctggaatacc tcggcagctt tgatcactat gcaacgtaac tactgctccc
     5941 ctctcctccg acgctccccc gcggggctcc ggaggggacc cagctcctct gagccatacc
     6001 aaccatcgtc cagccctcct gcacggatgc tgttgccggc agagcacagc ccactgggat
     6061 cacagcattt cggggaacat tgccacacca gtcagagagc ccagaacacc tgggcaagta
     6121 ggcggactgg cagcctggct ctgggccctc gtccaccggg ccaagtggag ccccgcttca
     6181 agctctctgt tcagctccgc gttctcatgc ttctcatggg gtgggaaaag ggggcaaagc
     6241 ccccactttt tatacactag gcggggtaga ctgcggggtc ctagcctctt cctccgactt
     6301 tgcttttgca ggtctttcac tgcagatggg gctgctgtgg gagttgggac ttgtttgttt
     6361 tcctttttga gttcacgttg gatcctttct tgtacaactt ctgcggaagg acacagtagt
     6421 aactcgcctt ccttgtgcag agctagggcc ctacctgagc aagtcggctg tggcccggga
     6481 ggcagcgtga ctcctgctgt cctccagcct ttcagatgag atcctattcc agccaaatgc
     6541 agggaaacac tttattttgt ttgttttagg ttttgttttt ccttgagagc ctttttttag
     6601 gccccacaga cagtggtggg tggggaggcg ataggaaaca cattccccag tgtgcattta
     6661 acattcatag cctacaacca cagacgtgtc tgggggagcc tggcaaggcg ttcctcgtca
     6721 ccatcgtgtt tgcaaaggtt caaaaaacaa aaatcaaaaa aaaaaaaaaa cataaaaata
     6781 ttttttttta agaaaagaaa taaagattca tcccctggcc tctacttcag attcgaagtg
     6841 ggaggcaact caatgtgcct ggggctcgcc atgggcccac agagtctcgc tatcatcccc
     6901 agcgtcgcag tgtggcaggt gtttgtaggc tgtgggttct ggccacctcg ggaaatgaat
     6961 ggcacaggtg agggcctgtg ccacgcccca cacacctcag ggccaagcgg gggcgtggct
     7021 ggcccttcag gtcaggccag tgggcctggt agcacatgtc tgtcctcagc cggacagatg
     7081 ctttctctcc tggtttgcag ctgtcttcaa atccccccat gacccgctct tcccactcct
     7141 tcaagttgcc ctcacaaacc aatgtggcaa gactactgga cttgtatcca tggtactata
     7201 ctcagtcctc ttatctcagc ttgctgaggg gcagggagag ggtctcttcc tctgggcagc
     7261 actatctaga taggtaagtg ggggcgggga agggtgcata gctgttttag ccgagggact
     7321 cgataccgac gtccccagat atagctaggc taagtcaaga tcaacagtcc ggggttggtg
     7381 gtgttggatg aaacattcat ttttaccttg tggatgctag tgctgtagag ttcactgttg
     7441 tacacagtct gttttctatt tgttaagaaa aactacagca tcattgcata cttcttgatg
     7501 gtaataaatt tgaataatca agatttctta cacacta
//
