LOCUS       XM_006502867            7564 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase receptor type
            F (Ptprf), transcript variant X4, mRNA.
ACCESSION   XM_006502867
VERSION     XM_006502867.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006502867.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7564
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7564
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /note="protein tyrosine phosphatase receptor type F;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 mRNAs, 92 ESTs, 3762 long SRA reads, 27
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 14 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
     CDS             215..5956
                     /gene="Ptprf"
                     /gene_synonym="LAR; LARS; RPTP-LAR"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase F
                     isoform X4"
                     /protein_id="XP_006502930.1"
                     /db_xref="GeneID:19268"
                     /db_xref="MGI:MGI:102695"
                     /translation="MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTG
                     LSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDE
                     AIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGG
                     NPDPEISWFKDFLPVDPAASNGRIKQLRSGGSPIRGALQIESSEESDQGKYECVATNS
                     AGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAE
                     ELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVT
                     ETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYA
                     FRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLV
                     RGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPT
                     IQVKTQQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVT
                     FDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSTPSAPPQKVTCVST
                     GSTTVRVSWVPPPADSRNGIITQYSVAYEAVDGEDRKRHVVDGISREHSSWDLLGLEK
                     WTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVSWKLPVP
                     NKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRPEESEDYETTISGLTPETT
                     YSITVAAYTTKGDGARSKPKVVTTTGAVPGRPTMMVSTTAMHTALLQWHPPKELPGEL
                     LGYRLQYRRADEARPNTIDFGKDDQHFTVTGLHKGATYVFRLAAKNRAGPGEEFEKEI
                     TTPEDVPSGFPQNLRVTGLTTSTTELTWDPPVLAERNGHITNYTVVYRDINSQLELQN
                     VTNDTHLTLLGLKPDTTYDIKVRAHTSKGAGPLSPSIQSRTMPVEQVFAKNFRVAAAM
                     KTSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHSMRKLIADLQPNTEYSFVLMNRGS
                     SAGGLQHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRWFYIVVVPID
                     RVGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPDTF
                     TLGDKKSYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQ
                     EEPEMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPV
                     EMRRLNYQTPGMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQQFTWENSNS
                     EVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPET
                     MGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVTLVDTVELATY
                     TMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVV
                     HCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEAL
                     LEAAMCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRFVSANLP
                     CNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAEST
                     EDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYI
                     LREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPIT
                     VHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRA
                     ALEYLGSFDHYAT"
ORIGIN      
        1 cgggcgacgg cggcggcagc ggcggactga gaacggcggc ctcagcggct cgagggggga
       61 catgcagacc gacggccccc ggagaggcgg aaggagcgga ggccctggtg ccctgccctc
      121 agtgctgact gcccagcgag agtgactggt ataagcaagc agagacccgg tggattgtct
      181 taggctgtgg ctggctgtgg agctagaacc ctggatggct cccgagccag ccccagggag
      241 gaggatggtg ccccttgtgc ctgctctcgt gatgcttggt ttgatggcag gtgctcatgg
      301 cgacagcaaa cccgtctttg ttaaggtccc cgaggaccag actgggctgt cgggaggggt
      361 ggcctccttc gtgtgccaag ccacagggga acccaagcct cgaattacgt ggatgaagaa
      421 ggggaagaaa gtcagctccc agcgctttga ggtaattgag tttgacgatg gagcagggtc
      481 agtgctgcgg atccagccat tacgagtgca gcgagacgaa gccatctatg agtgcacagc
      541 cacgaacagt ctcggggaga tcaacacaag tgccaagctg tcagtgcttg aagaggacca
      601 gctgccgtct gggttcccga ctatcgacat gggacctcag ctgaaggtgg tggagaaggg
      661 tcgcactgcc accatgctgt gtgcagccgg tgggaaccca gaccctgaga tctcttggtt
      721 caaagacttc cttcctgtgg accctgctgc aagcaacggt cgtatcaaac agctgcgatc
      781 aggtggttca ccaatcagag gtgcattgca gatagagagc agcgaggagt ctgaccaagg
      841 caagtacgag tgtgtggcca ccaactctgc aggcacacgc tactcggccc ccgccaacct
      901 gtatgtgcga gtgcgtcgcg tggctcctcg tttctccatc cctcccagca gccaagaggt
      961 gatgccgggc ggcagcgtga atctcacatg tgtggcagtg ggcgcgccca tgccgtatgt
     1021 gaaatggatg atgggcgccg aggaactgac caaagaggat gagatgccag tcggccgaaa
     1081 tgttctggag ctcagcaatg tcatgcgatc tgccaactat acctgtgtgg ccatctcttc
     1141 attaggcatg atagaagcca cggcccaggt cacagtaaaa gctctgccaa agcctccaat
     1201 tgatcttgtg gtgacagaga caaccgccac cagtgttact ctgacatggg actctggaaa
     1261 taccgagcct gtgtccttct acggcatcca gtaccgcgca gctggcacag acggcccctt
     1321 ccaggaagtg gatggtgtgg ccagcacccg atacagcatt ggtggcctca gccccttttc
     1381 ggaatatgct ttccgtgtgt tggctgttaa cagcattggg cgaggaccac ccagtgaggc
     1441 agtgcgagca cgcacggggg agcaggcacc ctccagccct ccgcgccgtg tgcaggctcg
     1501 aatgcttagc gccagcacca tgctggtcca gtgggaacca cctgaagagc ccaatggcct
     1561 ggtacgggga tatcgcgtct actatacccc agattcccga cgccctttga gcgcctggca
     1621 caagcataac actgacgcag gactccttac caccgtgggc agcctgctac ctggcatcac
     1681 ctacagcctc cgagtccttg ccttcactgc tgtgggtgac ggcccaccca gccccaccat
     1741 ccaagtcaag acacagcagg gagtgcctgc acagcctgcg gacttccagg ctaacgctga
     1801 gtcggacacc aggatccagc tctcgtggct gctgcccccg caggagcgga tcgtcaagta
     1861 tgagctggtg tactgggcag ccgaggatga gggccagcag cacaaggtga ccttcgaccc
     1921 cacctcctcc tacactctgg aggacctgaa gcctgacaca ttgtaccact tccagctggc
     1981 tgcccgttca gatttggggg tgggcgtctt cacgcccacc gtagaggccc gtacagcaca
     2041 gtccacccca tcagcccctc cccagaaggt gacatgtgtg agcacgggct ccaccacggt
     2101 ccgggtaagt tgggttccac cgccggccga cagccgcaac ggcattatca cccagtactc
     2161 cgtggcctat gaggcagtgg acggcgaaga ccgtaagcga catgtggtgg atggcatcag
     2221 ccgtgagcat tccagctggg acctgctggg cctggagaag tggacggagt accgggtgtg
     2281 ggtgcgggca cacacagatg tgggccctgg ccctgagagc agcccggtgc tggtgcgcac
     2341 cgatgaggac gtgcctagcg ggccaccacg gaaggtagag gttgagcctc tgaactccac
     2401 tgctgtgcat gtctcctgga agctgcccgt ccccaacaag cagcacggac agattcgtgg
     2461 ctaccaggtc acctatgtgc ggttggagaa tggtgagccc cgaggccaac ccatcatcca
     2521 ggatgtcatg ctggctgagg ctcagtggag accagaggag tccgaggact atgagaccac
     2581 catcagcggc ctcacccccg agaccaccta ctccatcacc gtcgctgcct acaccactaa
     2641 gggggatggt gcccgaagca agcccaaggt ggttactaca acaggggcag tcccaggacg
     2701 gcccaccatg atggtcagca ccacggccat gcacaccgcg ctgctgcagt ggcacccacc
     2761 caaggagctg cctggagagc tgctgggcta ccgtctccaa taccggcggg ccgacgaggc
     2821 gcggcccaac accatagact ttggcaagga tgaccaacat tttacagtca ccggcctgca
     2881 caaaggggcc acctacgtct tccggctcgc tgccaagaac cgggctggcc caggagaaga
     2941 gtttgagaaa gagatcacca cccccgagga tgtgcccagt ggctttcctc aaaatcttcg
     3001 agtgacagga ctgaccacat ctaccacgga actgacctgg gacccgccgg tgctggcgga
     3061 gaggaatggt cacatcacca actatactgt ggtctaccgt gacatcaaca gccagcttga
     3121 actacagaat gtcaccaacg acacacacct tacactcttg ggccttaaac cggacaccac
     3181 ttatgacatc aaggtccgtg cacataccag caaaggcgcc ggccctctca gccccagcat
     3241 ccagtcccgg accatgcccg tggagcaagt gtttgccaag aatttccgtg tggccgctgc
     3301 gatgaagaca tctgtgctgc tcagttggga ggtccccgac tcttataagt cagctgtgcc
     3361 cttcaagatc ctgtacaatg ggcagagcgt ggaggtggat gggcactcga tgcggaagct
     3421 gattgcagac ctgcaaccca acacggagta ctccttcgtc ctgatgaatc gtggcagtag
     3481 cgccgggggc ctacagcacc tggtgtccat ccgcactgcc ccggacctcc taccccagaa
     3541 gccactgcct gcctccgcct ttatagagga tggccgcttc tccctctcca tgcctcaagt
     3601 gcaggacccc tcgctagtca ggtggttcta cattgtggtg gtgcccattg accgtgtggg
     3661 cgggaacttg ctggcaccaa gatggaacac accagaggag ttggagctgg acgagcttct
     3721 ggaggccatc gagcagggcg aggagaaaca gcggaggcgc cggcgccaag cagagcggct
     3781 gaagccttat gtggcggccc aagtggatgt gctccctgac accttcaccc tgggggacaa
     3841 gaagagctac cgcggcttct acaaccggcc cctgtctccg gatctgagtt accagtgctt
     3901 cgttctcgcc tccctcaagg aacccatgga ccagaagcgc tacgcctcca gcccctactc
     3961 ggacgagatt gtagtccagg tgacgccagc acagcagcag gaggagcccg agatgctgtg
     4021 ggtgacaggc cctgtcctgg cggtcattct catcatactc attgtcatcg ccatcctcct
     4081 gttcaagagg aagagaacac actccccatc atcaaaggat gagcagtcaa tcgggctgaa
     4141 ggactccctg ttggcccact cttctgaccc tgtggagatg cgaaggctta actaccagac
     4201 cccaggtatg cgagaccacc cgcccatccc catcactgac ctggcagaca atattgagcg
     4261 cctcaaagcc aacgatgggc tcaagttctc ccaggagtat gagtccattg accctggaca
     4321 gcagttcaca tgggagaatt ccaactcgga ggtgaacaag cccaagaacc gctatgcaaa
     4381 tgtcattgcc tatgaccatt ctcgagtcct cctcacctcc attgatggtg ttcctgggag
     4441 tgactacatc aatgccaact acattgatgg ctaccgaaag cagaatgcct acatcgccac
     4501 acagggtccg ctgcccgaga ccatgggcga tttctggagg atggtgtggg aacagcgcac
     4561 agccacagtg gtcatgatga ccaggctaga ggagaaatcc cgggtgaagt gtgatcagta
     4621 ttggccagtc cgtggcactg agacctatgg cctcattcag gtgaccctgg tggacactgt
     4681 ggagttggcc acatacacca tgcgcacctt tgccctccat aagagtggct ccagtgagaa
     4741 gcgtgagctg cgtcagttcc agttcatggc ctggccagac cacggcgttc ctgagtaccc
     4801 cactcccatc ttggccttcc tgagacgggt caaggcctgt aacccactag atgcggggcc
     4861 catggtggtg cattgcagtg cgggtgtggg gcgcacaggc tgcttcatcg tcatcgacgc
     4921 aatgctggag cgtatgaagc acgagaagac ggttgacatc tatggccacg tgacgtgcat
     4981 gcgctcacaa aggaactaca tggtgcagac cgaggaccag tatgtgttca tccacgaggc
     5041 cctgctagag gctgccatgt gcggacacac cgaggtgctc gctcggaacc tctatgccca
     5101 catccagaag ctaggccaag tgcctcccgg ggagagcgtc acggccatgg aacttgagtt
     5161 caagttgctg gccaactcca aggcccacac gtcgcgcttt gtcagtgcca acctgccctg
     5221 caacaagttc aagaaccgcc tagtgaacat catgccctat gagctgaccc gagtgtgctt
     5281 gcaacccatc cgtggtgtgg agggctcaga ctacatcaat gccagctttc tagatggcta
     5341 cagacagcag aaggcctaca tagctacaca ggggcctctg gcagagagca ccgaggactt
     5401 ctggcgcatg ttatgggagc acaattccac catcatcgtc atgctgacca agcttcggga
     5461 gatgggcagg gagaaatgtc accagtactg gccagcagag cgctccgctc gctatcagta
     5521 cttcgttgtt gacccgatgg ctgagtacaa catgccccag tatattctgc gtgaattcaa
     5581 agtcacagac gcccgggatg ggcagtcaag gacaatccga cagttccagt ttacagactg
     5641 gccagagcaa ggagtaccca aaacaggtga aggcttcatc gacttcatcg ggcaggtgca
     5701 caagacaaag gagcagtttg gccaggatgg gcccatcacg gtgcactgca gtgctggtgt
     5761 gggccgcacc ggtgtgttca tcaccctgag cattgtcctg gagcgcatgc ggtatgaggg
     5821 tgtggttgac atgttccaga ccgtgaagac cctccgcaca cagcgccctg caatggtgca
     5881 gacagaggac caataccagc tgtgctaccg tgcggccctg gaatacctcg gcagctttga
     5941 tcactatgca acgtaactac tgctcccctc tcctccgacg ctcccccgcg gggctccgga
     6001 ggggacccag ctcctctgag ccataccaac catcgtccag ccctcctgca cggatgctgt
     6061 tgccggcaga gcacagccca ctgggatcac agcatttcgg ggaacattgc cacaccagtc
     6121 agagagccca gaacacctgg gcaagtaggc ggactggcag cctggctctg ggccctcgtc
     6181 caccgggcca agtggagccc cgcttcaagc tctctgttca gctccgcgtt ctcatgcttc
     6241 tcatggggtg ggaaaagggg gcaaagcccc cactttttat acactaggcg gggtagactg
     6301 cggggtccta gcctcttcct ccgactttgc ttttgcaggt ctttcactgc agatggggct
     6361 gctgtgggag ttgggacttg tttgttttcc tttttgagtt cacgttggat cctttcttgt
     6421 acaacttctg cggaaggaca cagtagtaac tcgccttcct tgtgcagagc tagggcccta
     6481 cctgagcaag tcggctgtgg cccgggaggc agcgtgactc ctgctgtcct ccagcctttc
     6541 agatgagatc ctattccagc caaatgcagg gaaacacttt attttgtttg ttttaggttt
     6601 tgtttttcct tgagagcctt tttttaggcc ccacagacag tggtgggtgg ggaggcgata
     6661 ggaaacacat tccccagtgt gcatttaaca ttcatagcct acaaccacag acgtgtctgg
     6721 gggagcctgg caaggcgttc ctcgtcacca tcgtgtttgc aaaggttcaa aaaacaaaaa
     6781 tcaaaaaaaa aaaaaaacat aaaaatattt ttttttaaga aaagaaataa agattcatcc
     6841 cctggcctct acttcagatt cgaagtggga ggcaactcaa tgtgcctggg gctcgccatg
     6901 ggcccacaga gtctcgctat catccccagc gtcgcagtgt ggcaggtgtt tgtaggctgt
     6961 gggttctggc cacctcggga aatgaatggc acaggtgagg gcctgtgcca cgccccacac
     7021 acctcagggc caagcggggg cgtggctggc ccttcaggtc aggccagtgg gcctggtagc
     7081 acatgtctgt cctcagccgg acagatgctt tctctcctgg tttgcagctg tcttcaaatc
     7141 cccccatgac ccgctcttcc cactccttca agttgccctc acaaaccaat gtggcaagac
     7201 tactggactt gtatccatgg tactatactc agtcctctta tctcagcttg ctgaggggca
     7261 gggagagggt ctcttcctct gggcagcact atctagatag gtaagtgggg gcggggaagg
     7321 gtgcatagct gttttagccg agggactcga taccgacgtc cccagatata gctaggctaa
     7381 gtcaagatca acagtccggg gttggtggtg ttggatgaaa cattcatttt taccttgtgg
     7441 atgctagtgc tgtagagttc actgttgtac acagtctgtt ttctatttgt taagaaaaac
     7501 tacagcatca ttgcatactt cttgatggta ataaatttga ataatcaaga tttcttacac
     7561 acta
//
