LOCUS       XM_017319504            2697 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 22 (lymphoid) (Ptpn22), transcript variant X7, mRNA.
ACCESSION   XM_017319504
VERSION     XM_017319504.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017319504.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..2697
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /note="protein tyrosine phosphatase, non-receptor type 22
                     (lymphoid); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 56 ESTs, 40 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 1 sample with support for
                     all annotated introns"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
     CDS             422..2485
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     22 isoform X2"
                     /protein_id="XP_017174993.1"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
                     /translation="MIWEYRILVIVMACMEFEMGKKKCERYWAEPGETQLQFGPFSIS
                     CEAEKKKSDYKIRTLKAKFNNETRIIYQFHYKNWPDHDVPSSIDPILQLIWDMRCYQE
                     DDCVPICIHCSAGCGRTGVICAVDYTWMLLKDGIIPKNFSVFNLIQEMRTQRPSLVQT
                     QEQYELVYSAVLELFKRHMDVISDNHLGREIQAQCSIPEQSLTVEADSCPLDLPKNAM
                     RDVKTTNQHSKQGAEAESTGGSSLGLRTSTMNAEEELVLHSAKSSPSFNCLELNCGCN
                     NKAVITRNGQARASPVVGEPLQKYQSLDFGSMLFGSCPSALPINTADRYHNSKGPVKR
                     TKSTPFELIQQRKTNDLAVGDGFSCLESQLHEHYSLRELQVQRVAHVSSEELNYSLPG
                     ACDASCVPRHSPGALRVHLYTSLAEDPYFSSSPPNSADSKMSFDLPEKQDGATSPGAL
                     LPASSTTSFFYSNPHDSLVMNTLTSFSPPLNQETAVEAPSRRTDDEIPPPLPERTPES
                     FIVVEEAGEPSPRVTESLPLVVTFGASPECSGTSEMKSHDSVGFTPSKNVKLRSPKSD
                     RHQDGSPPPPLPERTLESFFLADEDCIQAQAVQTSSTSYPETTENSTSSKQTLRTPGK
                     SFTRSKSLKIFRNMKKSVCNSSSPSKPTERVQPKNSSSFLNFGFGNRFSKPKGPRNPP
                     SAWNM"
ORIGIN      
        1 gcaactactg aaagaagccc agaaaaagaa actcaacagt gaggagtttg ccagtgaatt
       61 tctgctgcag cgtgagcttc acttctccaa agtcactgaa ctgtgtcatc attatttcct
      121 gtcctggaag aactgagccc cagaggatgc tacaagggtt gagaagctga aaaggcaatc
      181 caccaagtac aaggccgaca aaatctatcc tacaactgtg gctcagaggc ccaagaatat
      241 caagaaaaac agatacaagg atattttgcc ctatgatcac agcctggtag agctgtctct
      301 gttaacttcc gatgaggatt ccagttatat caatgccagc tttattaagg gtgtctatgg
      361 acccaaggct tatattgcta cccagggtcc tttatctaca actctcctgg acttctggag
      421 gatgatttgg gagtaccgca tcttggtcat tgtcatggca tgtatggagt ttgaaatggg
      481 aaagaaaaaa tgtgagcgtt attgggccga accaggagaa acgcagctgc aatttggccc
      541 cttttctata tcctgtgaag ctgagaaaaa gaaatctgat tataaaatca ggactctgaa
      601 ggccaagttc aataatgaaa ctcgaattat ttaccagttt cattataaga attggccaga
      661 ccatgatgtg ccttcatcta tagaccctat tcttcagctc atctgggata tgcgttgtta
      721 ccaagaagat gactgtgttc ctatatgcat tcactgcagt gccggctgcg gaaggacagg
      781 tgtcatttgt gctgttgatt atacatggat gctgctgaaa gatgggataa ttcctaagaa
      841 cttcagtgtt tttaatttga ttcaggagat gcgaacacag aggccttcgc tagttcaaac
      901 tcaggaacag tacgaactgg tctacagtgc tgtgttagag ctgtttaaga ggcacatgga
      961 tgttatctct gataatcacc ttggaagaga gattcaagca caatgctcaa ttcctgaaca
     1021 aagcctcacg gtagaagctg actcttgtcc tctggattta ccaaaaaacg ccatgaggga
     1081 tgtgaaaacg acaaaccagc atagcaaaca aggggctgaa gcggagagca ctggagggtc
     1141 ttcccttggc cttaggactt ctacgatgaa tgccgaggaa gagttggttt tgcactcggc
     1201 taaatcaagc ccttctttta actgtttaga gctaaactgc gggtgtaaca acaaggctgt
     1261 cataaccagg aacgggcagg caagggcttc tccagtcgtg ggagagcccc ttcagaagta
     1321 tcaaagtctg gattttggtt ccatgttgtt tgggtcgtgt cctagtgctc tgcccataaa
     1381 cacagcggac aggtatcaca attcaaaggg gccggtaaaa cggaccaaat caactccctt
     1441 tgaactgatt cagcagagaa aaacaaatga cttggccgtg ggagacggtt tttcatgcct
     1501 ggaatctcag ctgcatgagc attacagtct cagggagctg caggtgcaaa gagtggccca
     1561 tgtttcttca gaagagctga attattcact gcctggtgcc tgtgatgcgt cgtgtgtgcc
     1621 ccggcacagc cccggcgctt tgagagtgca tctgtacaca tctttagcgg aagatcctta
     1681 tttttcatca tcccctccga atagtgctga ttcgaagatg tcttttgatc tgcctgagaa
     1741 acaggatgga gccacttccc ctggcgctct attgccagcc tcttctacaa cctccttctt
     1801 ttatagcaac ccacacgact ccctagtgat gaacactctg accagctttt ccccaccgtt
     1861 aaaccaagag acagctgtag aagctccttc tcggaggaca gatgatgaaa tccccccgcc
     1921 actccctgaa cggacacccg agtcttttat tgtggttgag gaagccggag agccctcacc
     1981 acgtgttacc gaatccttac ctctggtggt aacatttgga gcatcaccag aatgcagtgg
     2041 gacatctgaa atgaagagcc atgactctgt agggtttaca ccaagcaaga atgtgaaact
     2101 ccgaagtccc aaatcagatc gacatcagga tggttctcct ccacctcctc tcccagaaag
     2161 aactctagag tccttctttc ttgctgatga ggactgtata caggcccaag ccgtgcaaac
     2221 ttcttctact agctatcctg aaaccacaga gaactccaca tcttctaaac aaacattgag
     2281 gacccctgga aaaagtttca caaggagtaa gagtttgaag atttttcgaa atatgaaaaa
     2341 aagtgtttgt aattcttcct caccaagcaa gcctacagaa cgtgttcagc caaaaaattc
     2401 cagctccttt ctgaattttg gtttcggaaa tcgtttttca aaacccaaag gaccaaggaa
     2461 cccgccatca gcttggaata tgtaacgcac ctctggattt ataagaatat ttgttaaaat
     2521 tgtacctgca gataaagcta cttgaatact gctataataa taatatcagt aatgaggata
     2581 tattttgtca atagtcttga aaaggaaagc aatatgtgac aaacttccag caaacttgta
     2641 ttttcatatt ccttatattt cactgggaac tgccaataaa gtttgtactt cagttta
//
