LOCUS       XM_011240042            3821 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 22 (lymphoid) (Ptpn22), transcript variant X6, mRNA.
ACCESSION   XM_011240042
VERSION     XM_011240042.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_011240042.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..3821
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /note="protein tyrosine phosphatase, non-receptor type 22
                     (lymphoid); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 59 ESTs, 56 long SRA
                     reads, 3 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
     CDS             1201..3609
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     22 isoform X1"
                     /protein_id="XP_011238344.1"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
                     /translation="MDQREILQQLLKEAQKKKLNSEEFASEFLKLKRQSTKYKADKIY
                     PTTVAQRPKNIKKNRYKDILPYDHSLVELSLLTSDEDSSYINASFIKGVYGPKAYIAT
                     QGPLSTTLLDFWRMIWEYRILVIVMACMEFEMGKKKCERYWAEPGETQLQFGPFSISC
                     EAEKKKSDYKIRTLKAKFNNETRIIYQFHYKNWPDHDVPSSIDPILQLIWDMRCYQED
                     DCVPICIHCSAGCGRTGVICAVDYTWMLLKDGIIPKNFSVFNLIQEMRTQRPSLVQTQ
                     EQYELVYSAVLELFKRHMDVISDNHLGREIQAQCSIPEQSLTVEADSCPLDLPKNAMR
                     DVKTTNQHSKQGAEAESTGGSSLGLRTSTMNAEEELVLHSAKSSPSFNCLELNCGCNN
                     KAVITRNGQARASPVVGEPLQKYQSLDFGSMLFGSCPSALPINTADRYHNSKGPVKRT
                     KSTPFELIQQRKTNDLAVGDGFSCLESQLHEHYSLRELQVQRVAHVSSEELNYSLPGA
                     CDASCVPRHSPGALRVHLYTSLAEDPYFSSSPPNSADSKMSFDLPEKQDGATSPGALL
                     PASSTTSFFYSNPHDSLVMNTLTSFSPPLNQETAVEAPSRRTDDEIPPPLPERTPESF
                     IVVEEAGEPSPRVTESLPLVVTFGASPECSGTSEMKSHDSVGFTPSKNVKLRSPKSDR
                     HQDGSPPPPLPERTLESFFLADEDCIQAQAVQTSSTSYPETTENSTSSKQTLRTPGKS
                     FTRSKSLKIFRNMKKSVCNSSSPSKPTERVQPKNSSSFLNFGFGNRFSKPKGPRNPPS
                     AWNM"
ORIGIN      
        1 gttgggaagg gtagggaggt gggggaaggg aggggagaag agaaccaaca gaaagtctca
       61 gaatatttgc taaggaggtg actcagcagc aggagactca attccctcca cccatctggg
      121 attcttgttt gtttgtttgt tttcaggaca gggtttcatt gtgtcccttg ctgtcctaga
      181 actcactatg tagaccaggc tggccttgaa ctcacagaga tctgcctgcc tctacctcat
      241 gctgggatta aaggcatgta tcaccactgc ccagcccatc tgtaattcct gttccaggag
      301 attcaatgtc atttcaatgc catctctggc ttccctgggt accaggtatg catatggtat
      361 acatatagac atacacatgt aggcaaaaca tccatttata taaaattaaa taaaatgcct
      421 taacaccaac aagattaata accataggtt attagatgaa aatcccaatg tcagagatag
      481 gaattgccta cctctgttgt tagatagaaa gcacacacac acacacacta caagcaattg
      541 tcaatgtttc tgggtttcca tcagaactaa gatcttgctg ccaaaggtga catatgcttc
      601 ggttgcaaga catactgaaa tcaagctggt gctaagaagc ttcctttctg gtggctaact
      661 ggtgctctgc aggctgctgg ggaggctggt caccaacatt gttatttagc tgtggacatc
      721 tatacaataa cgcctactgg caatatgagc cctggggcaa tggcagcagg tctcttcagc
      781 agataaccag cagctttctg agtggatttg atgcccttgc catctacatg gtactataaa
      841 tctggttaaa tgctctggct gggggaaaag aaaaacaaaa caaaacaaca gcagcaacaa
      901 caaccaaaac ctctggctgg gaggtcatag gcccttatag ggcatccact gctgtcgttt
      961 tgcaaagcgg acgtgatgcg cctgtctaac tgccttctag ataactttct gtctatagag
     1021 tagtggtgct ttcagttttg gtcagagaac gtactgtctg cagtgatagg cagtgactgc
     1081 agagacaact ctggtcagag ttctgagaat aaaccactgc agggcatagg tgggcgtcac
     1141 ccaggccttt ctgctcactg ggatgtgaaa agctgaactc acagactctt gctctgcggc
     1201 atggaccaaa gagaaattct gcagcaacta ctgaaagaag cccagaaaaa gaaactcaac
     1261 agtgaggagt ttgccagtga atttctgaag ctgaaaaggc aatccaccaa gtacaaggcc
     1321 gacaaaatct atcctacaac tgtggctcag aggcccaaga atatcaagaa aaacagatac
     1381 aaggatattt tgccctatga tcacagcctg gtagagctgt ctctgttaac ttccgatgag
     1441 gattccagtt atatcaatgc cagctttatt aagggtgtct atggacccaa ggcttatatt
     1501 gctacccagg gtcctttatc tacaactctc ctggacttct ggaggatgat ttgggagtac
     1561 cgcatcttgg tcattgtcat ggcatgtatg gagtttgaaa tgggaaagaa aaaatgtgag
     1621 cgttattggg ccgaaccagg agaaacgcag ctgcaatttg gccccttttc tatatcctgt
     1681 gaagctgaga aaaagaaatc tgattataaa atcaggactc tgaaggccaa gttcaataat
     1741 gaaactcgaa ttatttacca gtttcattat aagaattggc cagaccatga tgtgccttca
     1801 tctatagacc ctattcttca gctcatctgg gatatgcgtt gttaccaaga agatgactgt
     1861 gttcctatat gcattcactg cagtgccggc tgcggaagga caggtgtcat ttgtgctgtt
     1921 gattatacat ggatgctgct gaaagatggg ataattccta agaacttcag tgtttttaat
     1981 ttgattcagg agatgcgaac acagaggcct tcgctagttc aaactcagga acagtacgaa
     2041 ctggtctaca gtgctgtgtt agagctgttt aagaggcaca tggatgttat ctctgataat
     2101 caccttggaa gagagattca agcacaatgc tcaattcctg aacaaagcct cacggtagaa
     2161 gctgactctt gtcctctgga tttaccaaaa aacgccatga gggatgtgaa aacgacaaac
     2221 cagcatagca aacaaggggc tgaagcggag agcactggag ggtcttccct tggccttagg
     2281 acttctacga tgaatgccga ggaagagttg gttttgcact cggctaaatc aagcccttct
     2341 tttaactgtt tagagctaaa ctgcgggtgt aacaacaagg ctgtcataac caggaacggg
     2401 caggcaaggg cttctccagt cgtgggagag ccccttcaga agtatcaaag tctggatttt
     2461 ggttccatgt tgtttgggtc gtgtcctagt gctctgccca taaacacagc ggacaggtat
     2521 cacaattcaa aggggccggt aaaacggacc aaatcaactc cctttgaact gattcagcag
     2581 agaaaaacaa atgacttggc cgtgggagac ggtttttcat gcctggaatc tcagctgcat
     2641 gagcattaca gtctcaggga gctgcaggtg caaagagtgg cccatgtttc ttcagaagag
     2701 ctgaattatt cactgcctgg tgcctgtgat gcgtcgtgtg tgccccggca cagccccggc
     2761 gctttgagag tgcatctgta cacatcttta gcggaagatc cttatttttc atcatcccct
     2821 ccgaatagtg ctgattcgaa gatgtctttt gatctgcctg agaaacagga tggagccact
     2881 tcccctggcg ctctattgcc agcctcttct acaacctcct tcttttatag caacccacac
     2941 gactccctag tgatgaacac tctgaccagc ttttccccac cgttaaacca agagacagct
     3001 gtagaagctc cttctcggag gacagatgat gaaatccccc cgccactccc tgaacggaca
     3061 cccgagtctt ttattgtggt tgaggaagcc ggagagccct caccacgtgt taccgaatcc
     3121 ttacctctgg tggtaacatt tggagcatca ccagaatgca gtgggacatc tgaaatgaag
     3181 agccatgact ctgtagggtt tacaccaagc aagaatgtga aactccgaag tcccaaatca
     3241 gatcgacatc aggatggttc tcctccacct cctctcccag aaagaactct agagtccttc
     3301 tttcttgctg atgaggactg tatacaggcc caagccgtgc aaacttcttc tactagctat
     3361 cctgaaacca cagagaactc cacatcttct aaacaaacat tgaggacccc tggaaaaagt
     3421 ttcacaagga gtaagagttt gaagattttt cgaaatatga aaaaaagtgt ttgtaattct
     3481 tcctcaccaa gcaagcctac agaacgtgtt cagccaaaaa attccagctc ctttctgaat
     3541 tttggtttcg gaaatcgttt ttcaaaaccc aaaggaccaa ggaacccgcc atcagcttgg
     3601 aatatgtaac gcacctctgg atttataaga atatttgtta aaattgtacc tgcagataaa
     3661 gctacttgaa tactgctata ataataatat cagtaatgag gatatatttt gtcaatagtc
     3721 ttgaaaagga aagcaatatg tgacaaactt ccagcaaact tgtattttca tattccttat
     3781 atttcactgg gaactgccaa taaagtttgt acttcagttt a
//
