LOCUS       XM_011240041            5750 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 22 (lymphoid) (Ptpn22), transcript variant X3, mRNA.
ACCESSION   XM_011240041
VERSION     XM_011240041.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_011240041.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5750
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..5750
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /note="protein tyrosine phosphatase, non-receptor type 22
                     (lymphoid); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 59 ESTs, 63 long SRA
                     reads, 3 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
     CDS             3130..5538
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     22 isoform X1"
                     /protein_id="XP_011238343.1"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
                     /translation="MDQREILQQLLKEAQKKKLNSEEFASEFLKLKRQSTKYKADKIY
                     PTTVAQRPKNIKKNRYKDILPYDHSLVELSLLTSDEDSSYINASFIKGVYGPKAYIAT
                     QGPLSTTLLDFWRMIWEYRILVIVMACMEFEMGKKKCERYWAEPGETQLQFGPFSISC
                     EAEKKKSDYKIRTLKAKFNNETRIIYQFHYKNWPDHDVPSSIDPILQLIWDMRCYQED
                     DCVPICIHCSAGCGRTGVICAVDYTWMLLKDGIIPKNFSVFNLIQEMRTQRPSLVQTQ
                     EQYELVYSAVLELFKRHMDVISDNHLGREIQAQCSIPEQSLTVEADSCPLDLPKNAMR
                     DVKTTNQHSKQGAEAESTGGSSLGLRTSTMNAEEELVLHSAKSSPSFNCLELNCGCNN
                     KAVITRNGQARASPVVGEPLQKYQSLDFGSMLFGSCPSALPINTADRYHNSKGPVKRT
                     KSTPFELIQQRKTNDLAVGDGFSCLESQLHEHYSLRELQVQRVAHVSSEELNYSLPGA
                     CDASCVPRHSPGALRVHLYTSLAEDPYFSSSPPNSADSKMSFDLPEKQDGATSPGALL
                     PASSTTSFFYSNPHDSLVMNTLTSFSPPLNQETAVEAPSRRTDDEIPPPLPERTPESF
                     IVVEEAGEPSPRVTESLPLVVTFGASPECSGTSEMKSHDSVGFTPSKNVKLRSPKSDR
                     HQDGSPPPPLPERTLESFFLADEDCIQAQAVQTSSTSYPETTENSTSSKQTLRTPGKS
                     FTRSKSLKIFRNMKKSVCNSSSPSKPTERVQPKNSSSFLNFGFGNRFSKPKGPRNPPS
                     AWNM"
ORIGIN      
        1 gttgggaagg gtagggaggt gggggaaggg aggggagaag agaaccaaca gaaagtctca
       61 gaatatttgc taaggaggtg actcagcagc aggagactca attccctcca cccatctggg
      121 attcttgttt gtttgtttgt tttcaggaca gggtttcatt gtgtcccttg ctgtcctaga
      181 actcactatg tagaccaggc tggccttgaa ctcacagaga tctgcctgcc tctacctcat
      241 gctgggatta aaggcatgta tcaccactgc ccagcccatc tgtaattcct gttccaggag
      301 attcaatgtc atttcaatgc catctctggc ttccctgggt accaggtatg catatggtat
      361 acatatagac atacacatgt aggcaaaaca tccatttata taaaattaaa taaaatgcct
      421 taacaccaac aagattaata accataggtt attagatgaa aatcccaatg tcagagatag
      481 gaattgccta cctctgttgt tagatagaaa gcacacacac acacacacta caagcaattg
      541 tcaatgtttc tgggtttcca tcagaactaa gatcttgctg ccaaaggtga catatgcttc
      601 ggttgcaaga catactgaaa tcaagctggt gctaagaagc ttcctttctg gtggctaact
      661 ggtgctctgc aggctgctgg ggaggctggt caccaacatt gttatttagc tgtggacatc
      721 tatacaataa cgcctactgg caatatgagc cctggggcaa tggcagcagg tctcttcagc
      781 agataaccag cagctttctg agtggatttg atgcccttgc catctacatg gtactataaa
      841 tctggttaaa tgctctggct gggggaaaag aaaaacaaaa caaaacaaca gcagcaacaa
      901 caaccaaaac ctctggctgg gaggtcatag gcccttatag ggcatccact gctgtcgttt
      961 tgcaaagcgg acgtgatgcg cctgtctaac tgccttctag ataactttct gtctatagag
     1021 tagtggtgct ttcagttttg gtcagagaac gtactgtctg cagtgatagg cagtgactgc
     1081 agagacaact ctggtcagag ttctgagaat aaaccactga ggatccacac aaacttgagt
     1141 ttgtgtcaac tcaacactct gtcgcggagg gtaagggatt catggagtcc caccccagcc
     1201 tgaagatctc tatgccggta atggttggca gggaagggag agaagtcatc ttcagtgtga
     1261 gactctggta agctatgcat gctcccctaa actaccctaa tgaagctcac tgggattgaa
     1321 aactaaaaaa gacatgaaag tgggaggcag gagatggttg gcaagaggag aggggttagg
     1381 tgtgaagaga agagagggta agactgaatg cgtagtgtaa tcggaatgca ttaactacaa
     1441 tatgaaaatg tcatgtaatc cattatgtgt gactaatgta tgataataat gttcctcttt
     1501 ctatttttat ggcctacaca cacacacaca cacacacaca cacacacaca cacacacaca
     1561 cacacttaaa tctagattct ctgtttaagg ggaaaaaaca tgtaatactt gcctttctga
     1621 gtctggctta aatttcatat tttcatataa ttttatttat agttaactta ggatttttaa
     1681 agtatttaac ttttgagaca gtgtcttgct atatatagtt cagataggcc tgcactttgt
     1741 aaccattctc ctatctgagc ctcctcagtg ctagtgttac aagtatattc cattataccc
     1801 tgaagaatgt tgtattcttt ttaaaaataa agcttcccca tattttgtat gttttaaaat
     1861 agtcaaatat tgcatcattt agagtagcaa gaaatttcct gttgttgcta gacaaggata
     1921 atctcagaga tttgttttag tctcaggaaa tattgctgaa gaattatggt tcattttaat
     1981 ttgtgtgaac tacatttgaa attctttatg tgaaatacta acttcaaatt gcctgccaag
     2041 ggttcaatga agagggtgca gcgtgttttg tgttcaaaat catgattttc tgaagggagt
     2101 ttgaatagtg taaaaccaga aagggttgct aatatcttaa tagaggaagt ccaaactaca
     2161 cctttcccag tttttttttt taacttgaaa ctaattttgt aacattctgt ttactgaact
     2221 tcctcatttg caagggtttt cacactgaat tagatcttga gtggatttgt gcccatcgaa
     2281 gagaggattt atgcaaacgg agatgtggaa gcattctctg gaataacctg ccttgttaag
     2341 gcactgatac cacagatgtg gacggctccc tgaaacgcga tcttttctga gataggctct
     2401 gtaggatcaa aatgtcaaca tgtcttcatg aattcttcag cctctttcat tcttcctccc
     2461 tccccttctg agagagagag agagagagag agagagagcg ctcactttgt ttctcaggtg
     2521 tctcaaactc tgagactcaa gtgatcttgc agctggggac agtcctgagg agctgggact
     2581 gcaccacctc tcctcaattc tctccagaca ggctgaccta gatagaatct gtatggttct
     2641 cagcaagcaa tattttagct ttagttccgt tttgtccttt cgctgtttgc tagcagtgcg
     2701 ttctggggat attgtgctaa ctgcctcccc ggtgcttccc atcctgtgta gagctgtact
     2761 ctcagtgttt gcaaagctac tggaggtctg aagaagtaca gagaccaaca cttcccttaa
     2821 tgagggccag tacttcccca gtcacgggtg agatggacca tcagaagcag tggactttgc
     2881 ttcctctaaa agaaaaacgt gaggtttata atggaagctt gacaaattct gaaacaaaat
     2941 gcccgcttga tgagcagagg tctgccatga tcatatctat aggagacttt ggggataatg
     3001 gtccgggtcg gagataggta actccagtgt ttgtctcctc tcctgcagca gggcataggt
     3061 gggcgtcacc caggcctttc tgctcactgg gatgtgaaaa gctgaactca cagactcttg
     3121 ctctgcggca tggaccaaag agaaattctg cagcaactac tgaaagaagc ccagaaaaag
     3181 aaactcaaca gtgaggagtt tgccagtgaa tttctgaagc tgaaaaggca atccaccaag
     3241 tacaaggccg acaaaatcta tcctacaact gtggctcaga ggcccaagaa tatcaagaaa
     3301 aacagataca aggatatttt gccctatgat cacagcctgg tagagctgtc tctgttaact
     3361 tccgatgagg attccagtta tatcaatgcc agctttatta agggtgtcta tggacccaag
     3421 gcttatattg ctacccaggg tcctttatct acaactctcc tggacttctg gaggatgatt
     3481 tgggagtacc gcatcttggt cattgtcatg gcatgtatgg agtttgaaat gggaaagaaa
     3541 aaatgtgagc gttattgggc cgaaccagga gaaacgcagc tgcaatttgg ccccttttct
     3601 atatcctgtg aagctgagaa aaagaaatct gattataaaa tcaggactct gaaggccaag
     3661 ttcaataatg aaactcgaat tatttaccag tttcattata agaattggcc agaccatgat
     3721 gtgccttcat ctatagaccc tattcttcag ctcatctggg atatgcgttg ttaccaagaa
     3781 gatgactgtg ttcctatatg cattcactgc agtgccggct gcggaaggac aggtgtcatt
     3841 tgtgctgttg attatacatg gatgctgctg aaagatggga taattcctaa gaacttcagt
     3901 gtttttaatt tgattcagga gatgcgaaca cagaggcctt cgctagttca aactcaggaa
     3961 cagtacgaac tggtctacag tgctgtgtta gagctgttta agaggcacat ggatgttatc
     4021 tctgataatc accttggaag agagattcaa gcacaatgct caattcctga acaaagcctc
     4081 acggtagaag ctgactcttg tcctctggat ttaccaaaaa acgccatgag ggatgtgaaa
     4141 acgacaaacc agcatagcaa acaaggggct gaagcggaga gcactggagg gtcttccctt
     4201 ggccttagga cttctacgat gaatgccgag gaagagttgg ttttgcactc ggctaaatca
     4261 agcccttctt ttaactgttt agagctaaac tgcgggtgta acaacaaggc tgtcataacc
     4321 aggaacgggc aggcaagggc ttctccagtc gtgggagagc cccttcagaa gtatcaaagt
     4381 ctggattttg gttccatgtt gtttgggtcg tgtcctagtg ctctgcccat aaacacagcg
     4441 gacaggtatc acaattcaaa ggggccggta aaacggacca aatcaactcc ctttgaactg
     4501 attcagcaga gaaaaacaaa tgacttggcc gtgggagacg gtttttcatg cctggaatct
     4561 cagctgcatg agcattacag tctcagggag ctgcaggtgc aaagagtggc ccatgtttct
     4621 tcagaagagc tgaattattc actgcctggt gcctgtgatg cgtcgtgtgt gccccggcac
     4681 agccccggcg ctttgagagt gcatctgtac acatctttag cggaagatcc ttatttttca
     4741 tcatcccctc cgaatagtgc tgattcgaag atgtcttttg atctgcctga gaaacaggat
     4801 ggagccactt cccctggcgc tctattgcca gcctcttcta caacctcctt cttttatagc
     4861 aacccacacg actccctagt gatgaacact ctgaccagct tttccccacc gttaaaccaa
     4921 gagacagctg tagaagctcc ttctcggagg acagatgatg aaatcccccc gccactccct
     4981 gaacggacac ccgagtcttt tattgtggtt gaggaagccg gagagccctc accacgtgtt
     5041 accgaatcct tacctctggt ggtaacattt ggagcatcac cagaatgcag tgggacatct
     5101 gaaatgaaga gccatgactc tgtagggttt acaccaagca agaatgtgaa actccgaagt
     5161 cccaaatcag atcgacatca ggatggttct cctccacctc ctctcccaga aagaactcta
     5221 gagtccttct ttcttgctga tgaggactgt atacaggccc aagccgtgca aacttcttct
     5281 actagctatc ctgaaaccac agagaactcc acatcttcta aacaaacatt gaggacccct
     5341 ggaaaaagtt tcacaaggag taagagtttg aagatttttc gaaatatgaa aaaaagtgtt
     5401 tgtaattctt cctcaccaag caagcctaca gaacgtgttc agccaaaaaa ttccagctcc
     5461 tttctgaatt ttggtttcgg aaatcgtttt tcaaaaccca aaggaccaag gaacccgcca
     5521 tcagcttgga atatgtaacg cacctctgga tttataagaa tatttgttaa aattgtacct
     5581 gcagataaag ctacttgaat actgctataa taataatatc agtaatgagg atatattttg
     5641 tcaatagtct tgaaaaggaa agcaatatgt gacaaacttc cagcaaactt gtattttcat
     5701 attccttata tttcactggg aactgccaat aaagtttgta cttcagttta
//
