LOCUS       XM_006501150            4301 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 22 (lymphoid) (Ptpn22), transcript variant X5, mRNA.
ACCESSION   XM_006501150
VERSION     XM_006501150.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006501150.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4301
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /note="protein tyrosine phosphatase, non-receptor type 22
                     (lymphoid); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 59 ESTs, 57 long SRA
                     reads, 3 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
     CDS             1681..4089
                     /gene="Ptpn22"
                     /gene_synonym="70zpep; PEP; Ptpn8"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     22 isoform X1"
                     /protein_id="XP_006501213.1"
                     /db_xref="GeneID:19260"
                     /db_xref="MGI:MGI:107170"
                     /translation="MDQREILQQLLKEAQKKKLNSEEFASEFLKLKRQSTKYKADKIY
                     PTTVAQRPKNIKKNRYKDILPYDHSLVELSLLTSDEDSSYINASFIKGVYGPKAYIAT
                     QGPLSTTLLDFWRMIWEYRILVIVMACMEFEMGKKKCERYWAEPGETQLQFGPFSISC
                     EAEKKKSDYKIRTLKAKFNNETRIIYQFHYKNWPDHDVPSSIDPILQLIWDMRCYQED
                     DCVPICIHCSAGCGRTGVICAVDYTWMLLKDGIIPKNFSVFNLIQEMRTQRPSLVQTQ
                     EQYELVYSAVLELFKRHMDVISDNHLGREIQAQCSIPEQSLTVEADSCPLDLPKNAMR
                     DVKTTNQHSKQGAEAESTGGSSLGLRTSTMNAEEELVLHSAKSSPSFNCLELNCGCNN
                     KAVITRNGQARASPVVGEPLQKYQSLDFGSMLFGSCPSALPINTADRYHNSKGPVKRT
                     KSTPFELIQQRKTNDLAVGDGFSCLESQLHEHYSLRELQVQRVAHVSSEELNYSLPGA
                     CDASCVPRHSPGALRVHLYTSLAEDPYFSSSPPNSADSKMSFDLPEKQDGATSPGALL
                     PASSTTSFFYSNPHDSLVMNTLTSFSPPLNQETAVEAPSRRTDDEIPPPLPERTPESF
                     IVVEEAGEPSPRVTESLPLVVTFGASPECSGTSEMKSHDSVGFTPSKNVKLRSPKSDR
                     HQDGSPPPPLPERTLESFFLADEDCIQAQAVQTSSTSYPETTENSTSSKQTLRTPGKS
                     FTRSKSLKIFRNMKKSVCNSSSPSKPTERVQPKNSSSFLNFGFGNRFSKPKGPRNPPS
                     AWNM"
ORIGIN      
        1 gttgggaagg gtagggaggt gggggaaggg aggggagaag agaaccaaca gaaagtctca
       61 gaatatttgc taaggaggtg actcagcagc aggagactca attccctcca cccatctggg
      121 attcttgttt gtttgtttgt tttcaggaca gggtttcatt gtgtcccttg ctgtcctaga
      181 actcactatg tagaccaggc tggccttgaa ctcacagaga tctgcctgcc tctacctcat
      241 gctgggatta aaggcatgta tcaccactgc ccagcccatc tgtaattcct gttccaggag
      301 attcaatgtc atttcaatgc catctctggc ttccctgggt accaggtatg catatggtat
      361 acatatagac atacacatgt aggcaaaaca tccatttata taaaattaaa taaaatgcct
      421 taacaccaac aagattaata accataggtt attagatgaa aatcccaatg tcagagatag
      481 gaattgccta cctctgttgt tagatagaaa gcacacacac acacacacta caagcaattg
      541 tcaatgtttc tgggtttcca tcagaactaa gatcttgctg ccaaaggtga catatgcttc
      601 ggttgcaaga catactgaaa tcaagctggt gctaagaagc ttcctttctg gtggctaact
      661 ggtgctctgc aggctgctgg ggaggctggt caccaacatt gttatttagc tgtggacatc
      721 tatacaataa cgcctactgg caatatgagc cctggggcaa tggcagcagg tctcttcagc
      781 agataaccag cagctttctg agtggatttg atgcccttgc catctacatg gtactataaa
      841 tctggttaaa tgctctggct gggggaaaag aaaaacaaaa caaaacaaca gcagcaacaa
      901 caaccaaaac ctctggctgg gaggtcatag gcccttatag ggcatccact gctgtcgttt
      961 tgcaaagcgg acgtgatgcg cctgtctaac tgccttctag ataactttct gtctatagag
     1021 tagtggtgct ttcagttttg gtcagagaac gtactgtctg cagtgatagg cagtgactgc
     1081 agagacaact ctggtcagag ttctgagaat aaaccactgg tgagtgctca ggaataaatg
     1141 ggacacctac atcacccctc cccaccccaa aacccaggga gcactcccag agaagggaca
     1201 gagagagatt atttattaac tttttctttt aacttttctt ttgttttgag acagaatttt
     1261 actgtgtaga tcaggctggt cttaaaactc acagaaatct gcctgcctct gtctcctgag
     1321 tgccaggatt taaaggccta tctttccagt gtaaaggcag gcgaaggcgg ttgaagaggt
     1381 ggggaatgct aatctctaag tgggacttgg gtgttacact cttgagctca tggaagctgt
     1441 gccactcgta gaggatccac acaaacttga gtttgtgtca actcaacact ctgtcgcgga
     1501 gggtaaggga ttcatggagt cccaccccag cctgaagatc tctatgccgg taatggttgg
     1561 cagggaaggg agagaagtca tcttcagtgt gagactctgc agggcatagg tgggcgtcac
     1621 ccaggccttt ctgctcactg ggatgtgaaa agctgaactc acagactctt gctctgcggc
     1681 atggaccaaa gagaaattct gcagcaacta ctgaaagaag cccagaaaaa gaaactcaac
     1741 agtgaggagt ttgccagtga atttctgaag ctgaaaaggc aatccaccaa gtacaaggcc
     1801 gacaaaatct atcctacaac tgtggctcag aggcccaaga atatcaagaa aaacagatac
     1861 aaggatattt tgccctatga tcacagcctg gtagagctgt ctctgttaac ttccgatgag
     1921 gattccagtt atatcaatgc cagctttatt aagggtgtct atggacccaa ggcttatatt
     1981 gctacccagg gtcctttatc tacaactctc ctggacttct ggaggatgat ttgggagtac
     2041 cgcatcttgg tcattgtcat ggcatgtatg gagtttgaaa tgggaaagaa aaaatgtgag
     2101 cgttattggg ccgaaccagg agaaacgcag ctgcaatttg gccccttttc tatatcctgt
     2161 gaagctgaga aaaagaaatc tgattataaa atcaggactc tgaaggccaa gttcaataat
     2221 gaaactcgaa ttatttacca gtttcattat aagaattggc cagaccatga tgtgccttca
     2281 tctatagacc ctattcttca gctcatctgg gatatgcgtt gttaccaaga agatgactgt
     2341 gttcctatat gcattcactg cagtgccggc tgcggaagga caggtgtcat ttgtgctgtt
     2401 gattatacat ggatgctgct gaaagatggg ataattccta agaacttcag tgtttttaat
     2461 ttgattcagg agatgcgaac acagaggcct tcgctagttc aaactcagga acagtacgaa
     2521 ctggtctaca gtgctgtgtt agagctgttt aagaggcaca tggatgttat ctctgataat
     2581 caccttggaa gagagattca agcacaatgc tcaattcctg aacaaagcct cacggtagaa
     2641 gctgactctt gtcctctgga tttaccaaaa aacgccatga gggatgtgaa aacgacaaac
     2701 cagcatagca aacaaggggc tgaagcggag agcactggag ggtcttccct tggccttagg
     2761 acttctacga tgaatgccga ggaagagttg gttttgcact cggctaaatc aagcccttct
     2821 tttaactgtt tagagctaaa ctgcgggtgt aacaacaagg ctgtcataac caggaacggg
     2881 caggcaaggg cttctccagt cgtgggagag ccccttcaga agtatcaaag tctggatttt
     2941 ggttccatgt tgtttgggtc gtgtcctagt gctctgccca taaacacagc ggacaggtat
     3001 cacaattcaa aggggccggt aaaacggacc aaatcaactc cctttgaact gattcagcag
     3061 agaaaaacaa atgacttggc cgtgggagac ggtttttcat gcctggaatc tcagctgcat
     3121 gagcattaca gtctcaggga gctgcaggtg caaagagtgg cccatgtttc ttcagaagag
     3181 ctgaattatt cactgcctgg tgcctgtgat gcgtcgtgtg tgccccggca cagccccggc
     3241 gctttgagag tgcatctgta cacatcttta gcggaagatc cttatttttc atcatcccct
     3301 ccgaatagtg ctgattcgaa gatgtctttt gatctgcctg agaaacagga tggagccact
     3361 tcccctggcg ctctattgcc agcctcttct acaacctcct tcttttatag caacccacac
     3421 gactccctag tgatgaacac tctgaccagc ttttccccac cgttaaacca agagacagct
     3481 gtagaagctc cttctcggag gacagatgat gaaatccccc cgccactccc tgaacggaca
     3541 cccgagtctt ttattgtggt tgaggaagcc ggagagccct caccacgtgt taccgaatcc
     3601 ttacctctgg tggtaacatt tggagcatca ccagaatgca gtgggacatc tgaaatgaag
     3661 agccatgact ctgtagggtt tacaccaagc aagaatgtga aactccgaag tcccaaatca
     3721 gatcgacatc aggatggttc tcctccacct cctctcccag aaagaactct agagtccttc
     3781 tttcttgctg atgaggactg tatacaggcc caagccgtgc aaacttcttc tactagctat
     3841 cctgaaacca cagagaactc cacatcttct aaacaaacat tgaggacccc tggaaaaagt
     3901 ttcacaagga gtaagagttt gaagattttt cgaaatatga aaaaaagtgt ttgtaattct
     3961 tcctcaccaa gcaagcctac agaacgtgtt cagccaaaaa attccagctc ctttctgaat
     4021 tttggtttcg gaaatcgttt ttcaaaaccc aaaggaccaa ggaacccgcc atcagcttgg
     4081 aatatgtaac gcacctctgg atttataaga atatttgtta aaattgtacc tgcagataaa
     4141 gctacttgaa tactgctata ataataatat cagtaatgag gatatatttt gtcaatagtc
     4201 ttgaaaagga aagcaatatg tgacaaactt ccagcaaact tgtattttca tattccttat
     4261 atttcactgg gaactgccaa taaagtttgt acttcagttt a
//
