LOCUS       NM_026988               1155 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus parathymosin (Ptms), mRNA.
ACCESSION   NM_026988 XM_355811
VERSION     NM_026988.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1155)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   4  (bases 1 to 1155)
  AUTHORS   Gurdziel,K., Vogt,K.R., Walton,K.D., Schneider,G.K. and
            Gumucio,D.L.
  TITLE     Transcriptome of the inner circular smooth muscle of the developing
            mouse intestine: Evidence for regulation of visceral smooth muscle
            genes by the hedgehog target gene, cJun
  JOURNAL   Dev Dyn 245 (5), 614-626 (2016)
   PUBMED   26930384
REFERENCE   5  (bases 1 to 1155)
  AUTHORS   Chesarino,N.M., McMichael,T.M., Hach,J.C. and Yount,J.S.
  TITLE     Phosphorylation of the antiviral protein interferon-inducible
            transmembrane protein 3 (IFITM3) dually regulates its endocytosis
            and ubiquitination
  JOURNAL   J Biol Chem 289 (17), 11986-11992 (2014)
   PUBMED   24627473
REFERENCE   6  (bases 1 to 1155)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   7  (bases 1 to 1155)
  AUTHORS   Hupe,M., Li,M.X., Gertow Gillner,K., Adams,R.H. and Stenman,J.M.
  TITLE     Evaluation of TRAP-sequencing technology with a versatile
            conditional mouse model
  JOURNAL   Nucleic Acids Res 42 (2), e14 (2014)
   PUBMED   24165879
REFERENCE   8  (bases 1 to 1155)
  AUTHORS   Clinton,M., Frangou-Lazaridis,M., Panneerselvam,C. and
            Horecker,B.L.
  TITLE     Prothymosin alpha and parathymosin: mRNA and polypeptide levels in
            rodent tissues
  JOURNAL   Arch Biochem Biophys 269 (1), 256-263 (1989)
   PUBMED   2916841
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK011360.1, BC052699.1 and AC142254.4.
            
            [WARNING] On Jan 30, 2025 this sequence was replaced by
            NM_026988.3.
            
            On Sep 29, 2009 this sequence version replaced NM_026988.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK011360.1, BC052699.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                AK011360.1         2-16
            16-1149             BC052699.1         1-1134
            1150-1155           AC142254.4         20364-20369
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 59.17 cM"
     gene            1..1155
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /note="parathymosin"
                     /db_xref="GeneID:69202"
                     /db_xref="MGI:MGI:1916452"
     exon            1..387
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             343..648
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /codon_start=1
                     /product="parathymosin"
                     /protein_id="NP_081264.1"
                     /db_xref="CCDS:CCDS39630.1"
                     /db_xref="GeneID:69202"
                     /db_xref="MGI:MGI:1916452"
                     /translation="MSEKSVEAAAELSAKDLKEKKDKVEEKAGRKERKKEVVEEEENG
                     AEEEEEETAEDGEDDDEGDEEDEEEEEEDEGPVRKRTAEEEDEADPKRQKTENGASA"
     exon            388..459
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            460..538
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            539..597
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            598..1155
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1123..1128
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      1149
                     /gene="Ptms"
                     /gene_synonym="2610009E16Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcggctggt cggcggcagc tctgctggtg cgggggcggc gagcaagacc gagcgaccgc
       61 gaccggagcg cgccggccac cgcccgcatc gtcctcccgc ctgcccgccc gcccgccctc
      121 cggacggccg cagccctgcg ggtctctgct cgggacccac ccccgcccca ccccgcgcgc
      181 ctctgccgcc tcttgcagcg agccagcttg ccgagcggcc gtcgctgccg ctgccgccgc
      241 cgccaccgcg ccaagttccg gccgcggcca ccctccgccg tccagggctc ctccgcctcg
      301 gccccgggac cccggctccc tgccagcccc ggccccggca ccatgtcgga gaagagcgtg
      361 gaggcagcgg ccgagctgag tgccaaggac ctgaaagaaa agaaggacaa ggtggaggag
      421 aaggccggcc ggaaagaacg gaagaaagaa gtagtggagg aggaggagaa tggagctgag
      481 gaagaggaag aagaaactgc agaggatgga gaggatgatg atgaagggga tgaagaagat
      541 gaggaagaag aggaggagga tgaaggcccc gtgcggaaga gaactgctga agaggaggat
      601 gaagcagacc ccaagaggca gaagacagaa aacggggcgt cggcatgaac ccctgcccgt
      661 gggcttgggg atgggaggcc cctcaggtcc tggaggtggg gcgggaacac acaaatccag
      721 ccccctttct cctggctccc tgctctggcc ctgccccaga gctgtgaccc ttgtcctttg
      781 acccagcctc tcatttccat ctctccagac actgctcctt caccctcact gccaccggtc
      841 cagctcctga cccgcctcat ctgagctccc cagccagccc tcacttgccc tagcattctt
      901 gttcttcttt cctgccttcc ctcaccatcc catatgttcc ggtccctgcg aagcctctcc
      961 ttgccctcta caccccgagc ctctcagcct gcccttcttt ctcctgcctg acccctgggt
     1021 ctccctcaga ttccctcctc tcagacagcg ccaggccggg gtggggctgg ggttggggcc
     1081 aagccccgaa gctgccccct cccctttttg tataatttaa taaagaaacg gtcgcgcttc
     1141 tgtttttaac ccgtc
//
