LOCUS       NM_001355270            6582 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus patched domain containing 4 (Ptchd4), transcript
            variant 1, mRNA.
ACCESSION   NM_001355270 XM_006524751
VERSION     NM_001355270.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6582)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6582)
  AUTHORS   Kirjavainen,A., Singh,P., Lahti,L., Seja,P., Lelkes,Z.,
            Makkonen,A., Kilpinen,S., Ono,Y., Salminen,M., Aitta-Aho,T.,
            Stenberg,T., Molchanova,S., Achim,K. and Partanen,J.
  TITLE     Gata2, Nkx2-2 and Skor2 form a transcription factor network
            regulating development of a midbrain GABAergic neuron subtype with
            characteristics of REM-sleep regulatory neurons
  JOURNAL   Development 149 (14) (2022)
   PUBMED   35815619
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117246.3 and AC110552.14.
            
            On Sep 14, 2017 this sequence version replaced XM_006524751.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC151166.1, SRR1660815.29990.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-641               AC117246.3         34157-34797
            642-1122            AC117246.3         94717-95197
            1123-6582           AC110552.14        62823-68282
FEATURES             Location/Qualifiers
     source          1..6582
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 19.65 cM"
     gene            1..6582
                     /gene="Ptchd4"
                     /gene_synonym="3110082D06Rik; Gm321"
                     /note="patched domain containing 4"
                     /db_xref="GeneID:627626"
                     /db_xref="MGI:MGI:1920485"
     exon            1..641
                     /gene="Ptchd4"
                     /gene_synonym="3110082D06Rik; Gm321"
                     /inference="alignment:Splign:2.1.0"
     exon            642..1122
                     /gene="Ptchd4"
                     /gene_synonym="3110082D06Rik; Gm321"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..6582
                     /gene="Ptchd4"
                     /gene_synonym="3110082D06Rik; Gm321"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggggaga gaggggtagc cccagcgctt acacatgtca catgtgcttt ttaagacggc
       61 cgggagcgcc tgcgagctgg atctggtgga ggatgctgcg gcaggtgctt cgcagagggc
      121 tccagtcatt ctgccacagg ctgggcttat gcgtgagccg gcacccggtc tttttcctca
      181 ccgtgccggc agtcctgacc atcaccttcg gcctcagcgc gctcaaccgc ttccagaccg
      241 agggcgacct ggagcgcctg gttgctccca gccacagcct ggccaagatc gagcgcagcc
      301 tagccagcag ccttttcccc ctggaccagt ccaaaagcca gctctattcg gacttacaca
      361 cccctgggag gtatggcagg gtgatcctcc tctcctcacc cggggacaat attttgctcc
      421 aggctgaggg gattctgcag acccaccgag ccgtgatgga aatgaaggtg aaccacaagg
      481 gctataatta tactttttcc catctgtgtg tgttgagaaa tcaggataag aaatgcgtgc
      541 tggatgatat tatttcagtg ctagaggatc tcaggcaggc tgccgtctcc aataagacaa
      601 cagccagggt gcaagtaagg tatcccaaca ctaaattaaa ggatgggagg aacagtttta
      661 ttggacacca gctgggcggg gtagtggaag tgccaaacag caaagaccag cgggtcaagt
      721 cagccagagc cattcaaatc acctactacc tccagaccta tggttctgcc acacaagacc
      781 tcatagggga gaagtgggag aatgagttct gtaagcttat gaggaagctc caggaggagc
      841 atcaagacct ccaactgtac tctctggcat cttttagcct ctggagagac tttcataaga
      901 ccagcatcct gaccagaagc aaggtcctgg tgagcctagt gctgatcctg accacggcca
      961 ccctgtccag ctccatgaag gactgcttgc gcagtaagcc cttcctgggc ctcctggggg
     1021 tgctcacggt ctgcatttcc atcgccactg cagccgggat attcttcatc actgatggga
     1081 agtacaactc aaccctgctg ggaatccctt tcttcgccat gggtcatgga actaaaggag
     1141 tatttgagct tctgtctgga tggcggagaa ccaaagagaa tttacccttc aaagacaggg
     1201 tagcagatgc ctactctgat gtgatggtca cctacaccat gaccagttcc ctgtacttca
     1261 tcacatttgg tatgggtgcc agccccttca caaacataga ggccgtgaag atcttctgtc
     1321 agaatatgtg tgtctctatt ctgttgaact acttctacat tttctctttc tttggctctt
     1381 gcctggtctt tgctggacaa cttgagcaaa atcgatacca cagcatcttt tgctgtaaga
     1441 tcccttctgc agaatacctg gaccgcaaac ctgtgtggtt ccagacagta atgagtgatg
     1501 ggcaccaaca gacatcgcat catgagacaa acccctacca gcaccatttc attcagcact
     1561 tccttcgaga acattacaat gagtggatta ccaatatcta tgtgaagcca tttgtggtca
     1621 tcctgtatct catttacgcc tctttctcct tcatggggtg cttgcagatc agtgatggag
     1681 ccagcatcat caacctacta gccagtgatt ccccaagtgt ttcctacgcc atggttcagc
     1741 aaaaatattt cagcaactat agccctgtaa taggattcta cgtctatgaa cccctggagt
     1801 actggaacag cagtgtccaa gaggatctgc agaggctctg tagtgggttc actgcagtgt
     1861 cctgggtaga gcagtattac cagtttctga aaacgagcaa catcagtgcc aataacaaga
     1921 ctgacttcat cagtgtcctg caaagctcgt ttttaaaaaa gccagaattc caacactttc
     1981 ggaatgatat cattttctcc agagctggtg atgaaaacaa catcattgct tctcgcttgt
     2041 atctggtggc caggactagc agggacaagc agaaggaagt catagaagtt ctggacaagt
     2101 tgaggcccct gtctctctca aagagtatcc ggttcatcgt gtttaatcct tcctttgttt
     2161 tcacagacca ttacagtttg tcagtcactg tgcctgttct gatcgcaggc tttggggttc
     2221 tcctggtgtt aatcctgact ttcttcctag tgatccatcc tctgggaaac ttctggctaa
     2281 ttcttagcgt cacctcaatt gagctgggcg ttctgggctt aatgacgttg tggaatgtcg
     2341 acatggattg catttctatc ttgtgcctta tctacacttt aaattttgcc attgaccact
     2401 gtgcaccact gctttataca tttgtattag caactgagca caccagaaca cagtgtataa
     2461 aaagctccct gcaagagcat gggacagcca ttttgcaaaa cattacttct tttcttattg
     2521 ggttgctccc cctcctcttt gtgccttcaa acctgacctt cacactgttc aaatgcttgc
     2581 tgctgaccgg gggttgcacg cttctgcact gttttgttat cttacctgtg ttcctaacct
     2641 tttttcctcc ttccaaaaag caccacaaga aaaagaaacg ggccaaacga aaggagagag
     2701 aggaaattga atgcatagaa atccaagaga accctgatca cgtcaccaca gtctgagggt
     2761 ggagactttt tcttttccag tattgcacaa tgatgcaggg ctagtaaggc tcagacctca
     2821 gctgcttggg ctggccaggg gtaaaaaggc aggtcagatc aagagtgcat ttttcatgac
     2881 gcatccaagg gtctgcttct tttgatggaa gagataataa aaggaggtga agttctttac
     2941 aaccttgtgc tccatgagag ataattctcc agacattgat cttagagctt ttctgagaaa
     3001 tggatggatt ggtgtggtca gatggaaggc cgaaagatct aaagattctt agaagaaatg
     3061 gagaagagag aataggtggt ctccagatag gggaaagtac aaaaagaaat gtctaatttg
     3121 tcatgtcact tcatgttttc atgaacagat caatcaaagg aaacctatgc acatgggaag
     3181 tacacattta atcctgtata aaccaaagga ccggacctcc caatccactt tgtgtgtaca
     3241 tataagtata catatacata atatgtcttg agtgtgtgtt ggtggttgga tgaaagaaga
     3301 tgttcatttg cagataggct ggcctttctc aaaaagtcaa atcaacatta gtcaaatata
     3361 taacctcatt agggatgata caaaatatat aattggtcac ttgaaatcaa ctcaactgtc
     3421 taaatagcaa gagaattatc aactgtgtga taacaagata gacagaaatt tgaatccatt
     3481 aaattctacc tatcatgttg ttggtcactg agatcctacg tttgggatga cttcaccaaa
     3541 actccaaaag gtatttgagt taattagcat gtgaacaaac gtttagaatc taaagtagtt
     3601 gagatagctt gtcattagct tttaacattt ctgtgtattt ggaaggccag catggctact
     3661 tttggatatc tcatccacct gaaaaaaatg agccctttaa gcacattgtt tttgcatgca
     3721 tatgtaaggg tacacagtgt aagtgagaga tggaaagaaa tgatgagata ccatttcgta
     3781 gttaagagct cttaagttaa atggtgaaaa tacactgttg tggcacaggt ggcaattaac
     3841 acaggaaaaa gaaaatgtct ggaaaatgta gcgagtaaaa tgagccatct accattcacc
     3901 atctcggcat caaacagcct gttgtttaag aaaaacttgc caactctaca gactctaatg
     3961 tgttccttgg aataagtctg ggagcattaa ccaagaccat gatcactatg atggtggtca
     4021 ccataacccc tgcagcatca ttttgtagct tcttggagta tcattgtctt cattaactag
     4081 aaagtaatct cctatggcaa gcacagctct ctactggtgc catattaact gtgtgtaatt
     4141 gcacctggag tccttacatt aaaaaaagaa agaaagaaag aaaaagtatt gaggtaaatg
     4201 ttttgggttt ttttggtttt gtttgtttgt tcgtttgttt gtttgagtta gtgttgaaaa
     4261 ctatgcccca ggcaagtact cagtctgctg ggtgcgttca aggactaagg ctgctattca
     4321 tgttggagaa ccttactaga aaattccttt tccatgccaa ataaggaacc taagggatga
     4381 ttcatttctg ggtaaaataa aacaaatgcc taatgattac acatcctgct aagaagctct
     4441 ttttcctgag gaacatttac atttcctacc aatttgggtt gtagaattta aatgcattaa
     4501 caatactatt ggctttaaaa aacaaaacac aactaaaact cttagaaaat tccattcctt
     4561 ttaagtttta ggaaataatg ctgatagaca gtactgctct tctaaatgat gcaaattttt
     4621 aaatggacat catttaaatg aaacttcagt ttattgaatg acatttgttc tattctactt
     4681 taaaactgct gtgtttcaat gtctcccctg atgtggatac aatagctata gaattaagga
     4741 gggaccataa cttcccataa ccgcacttga tattttcact gtatctgtaa agccatgtca
     4801 caggtaacgc cagcctttca ttgcaagaac ttttgtccta gggggaacag acatttggac
     4861 agttgacctc caggccatga tctcatattt gaagtcgaat tttctaagca gtttttgcag
     4921 ttggagaaca gaattcctct ttcaaagtta ctcatcgttt atgaaaattt ctatcactcc
     4981 cacctgcttg taaagacagc cactaagaag ctgaggattc catatcactt catatctgtc
     5041 catattcagt gaaactccat tgtttcacca attgtttatt taaagataac ttacttgtgt
     5101 tttataattg ccataccatt tcagatacaa aaaaaaaaaa aaaaaaaacc caacaacaac
     5161 aaaaagattg acaagctaat tggcaagctt gcaaactgcc aaatacatgg aagtaccgct
     5221 gcatattatg ccaaagcacc agtttcagtc tctctcaaag cacttggatg gggaaagact
     5281 tgtttatata ttaagtattg tcttcaagga tcagacgtgt aggacaaaca agaatttctc
     5341 attgtccaag tgtctagaga ggtggcattt tagaagagat gttaacttct ccagaacacg
     5401 tgattctctc caaggatatg tagcaataat ttactgaaat gaaactccgt gttctggaag
     5461 agttaatagg gtgcccaaaa ttccttgtct tggtcttagg aagtaatgta agcccagaag
     5521 aacctcgcaa agcatccggc aaaccttcca acctcacact gaagcagata tttccaagat
     5581 ttccttcact gagtaccaag tattaaaata ttagatcatg atttgcaggt aaacctccaa
     5641 actcaacctt ttctgattat tggtatgctc catcctagat tttcaagttt ttgcttgctt
     5701 tatccattgt gaagtgctga tggcattcaa gttaggacgt tatcgtctat caaacagagg
     5761 ggcctttcaa accctagaag aaaacagtgg tgaatctttt agaactgtgg agtattttat
     5821 atactgtagt gtgttttccc cttgatagaa gagattttta aaaacttgtg aaccccatac
     5881 tttttcttgt ttaaattgga ctgtgttccc cccccccaca gaatgtgaaa cagaaaatat
     5941 cattttatgt cccaatctcc ccaaggagga actcacctaa attatcagtc aagatttgtc
     6001 taaaggtttc gtgggctgac ctacatcatg tggaagtctg ttgaaagaat atatagctac
     6061 atgttttctg gtgggttctt gcagtgacca tgaacctctt tgaaggctga gcatgagtac
     6121 tctatgacag agctattctc aactaagttt gtatctcata aatgtctttc ttccaattta
     6181 tttccaattg ttttccacag aaatgaactt acatgtttta ttttgtattg tgaaagaaag
     6241 aagtgtgata cccgtagctt ctacgatgct ataatagcca ttcttgtatg ttgatcttga
     6301 gtgtaagagc tatgtccatt ctgtaattat ccattgcact ttaccataac aagctaatcc
     6361 ttctaggctt gcgattcgag ctggggatta attattgcca ttcagaattg tgtgtatttt
     6421 tatatgttga ctgtaaatat tgttattaca gtcaaatatt tttatgacca aatatttata
     6481 aatgcatggc acaatgcacg catgattact agtatgtaga tgattaaaga cactattttc
     6541 agggttatta cactttttat taaaattctc atattctcta tc
//
