LOCUS       NM_028208               2064 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus protein prenyltransferase alpha subunit repeat
            containing 1 (Ptar1), mRNA.
ACCESSION   NM_028208 XM_001477013 XM_129160
VERSION     NM_028208.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Scavuzzo MA, Chmielowiec J, Yang D, Wamble K, Chaboub LS, Duraine
            L, Tepe B, Glasgow SM, Arenkiel BR, Brou C, Deneen B and Borowiak
            M.
  TITLE     Pancreatic Cell Fate Determination Relies on Notch Ligand
            Trafficking by NFIA
  JOURNAL   Cell Rep 25 (13), 3811-3827 (2018)
   PUBMED   30590051
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Klein AD, Ferreira NS, Ben-Dor S, Duan J, Hardy J, Cox TM, Merrill
            AH Jr and Futerman AH.
  TITLE     Identification of Modifier Genes in a Mouse Model of Gaucher
            Disease
  JOURNAL   Cell Rep 16 (10), 2546-2553 (2016)
   PUBMED   27568557
REFERENCE   3  (bases 1 to 2064)
  AUTHORS   Girard A, Sachidanandam R, Hannon GJ and Carmell MA.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132088.4 and AC134830.2.
            
            On or before Sep 18, 2009 this sequence version replaced
            XM_001477013.1, XM_129160.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223970.20435.1,
                                           SRR7345562.609700.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               AC132088.4         19067-19212         c
            147-316             AC132088.4         12122-12291         c
            317-383             AC132088.4         3468-3534           c
            384-488             AC132088.4         801-905             c
            489-702             AC134830.2         60001-60214
            703-992             AC134830.2         69060-69349
            993-2064            AC134830.2         71305-72376
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 18.45 cM"
     gene            1..2064
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /note="protein prenyltransferase alpha subunit repeat
                     containing 1"
                     /db_xref="GeneID:72351"
                     /db_xref="MGI:MGI:1921875"
     exon            1..146
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1335
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /codon_start=1
                     /product="protein prenyltransferase alpha subunit
                     repeat-containing protein 1"
                     /protein_id="NP_082484.1"
                     /db_xref="CCDS:CCDS50405.1"
                     /db_xref="GeneID:72351"
                     /db_xref="MGI:MGI:1921875"
                     /translation="MAESNEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNR
                     SPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELADVTCTLLLLNPDFT
                     TAWNVRKELILSGTLSPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLSQETFLPSSV
                     AKGSLGAVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAKLDLKILLD
                     ELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTTIDSAVPQHNSLKSEPKDEAAAAST
                     EEPSVNLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPNLTHLSP
                     ADCPGGALNDSLQIPTSPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEME
                     HRFIDQVLSTCRNVEQVRYANAYRKWLVTLSQ"
     exon            147..316
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            317..383
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            384..488
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            489..702
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            703..992
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            993..2064
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaactcccg ccggcggctg ggctctgccg gaggcgcgcc cgatcgcggc ggccgccaac
       61 atggccgagt cgaacgagga ggtggcggtg ctggtgcaga gggtggtgaa ggacatcacc
      121 aacgccttcc gaaggaaccc gcacatagat gaaattggcc tgatcccatg ccctgaagca
      181 agatataacc ggagtcccat tgtcctggtt gagaacaaac ttggtgtgga gagctggtgt
      241 gtcaagttct tattaccata tgtccacaac aagctccttt tgtacagaac gagaaagcaa
      301 tggctaaaca aagatgaact ggctgacgtc acctgcaccc tgctgcttct caacccagac
      361 ttcaccactg catggaatgt caggaaagag ctcatcctct ctggcacttt aagtccaatt
      421 aaggatctgc atctgggaaa actggcctta actaagtttc ctaagagtcc agagacatgg
      481 attcacaggc gctgggtgct gcagcagtta agtcaggaaa cgttcctgcc ctcctctgtg
      541 gccaaaggaa gcttaggtgc agttcctgca gagaggacac agcggataat acaggaagag
      601 atggaagtct gcagtgaagc agcagggaga tatcccagca actacaatgc ctggtcccat
      661 cgcatctggg ttttacagaa cgtggccaag ctggatctga agatccttct tgatgaactg
      721 tcttctacta aacactgggc gtccatgcat gtctcagacc acagtggatt tcactatcgc
      781 cagttcttgc taaagtcatt gattagccag actacgatag acagtgctgt accgcagcac
      841 aactctttga aaagtgagcc aaaagatgaa gcagcggcag cctcaacaga ggagccaagt
      901 gtgaatcttc cccagctcct agaagaagag gtggaattct gcacagatct tattgattcc
      961 tatccaggac atgaaaccct ttggtgtcac aggcggcacg ttttctacct tcagcatcac
     1021 ttaaatggca ggctccctcc caacctgact cacctgtcac ctgcagactg ccctgggggc
     1081 gctttgaatg actcgctcca gattccaaca agccctcaac tatctcaggc aatggaagtg
     1141 gacggactga gtgactctag caagcaaggc tattcccagg aaaccaagcg cctgaagcgg
     1201 accccagctc cagactccct aggcctggag atggagcaca ggtttattga tcaagtattg
     1261 tccacttgtc ggaacgtaga gcaagtcagg tatgccaatg catacaggaa atggctggtg
     1321 actctgagtc agtgaaaggg gtggattcat cctaagaaat tccctttagt gcaatattgc
     1381 ttttctttct cagtgccata gttgcatgga ctgactggct aactgtattc ttcatctgta
     1441 gcttaaaagt ctataagaaa ccttttgttt tatttatttt gttaagagcc ggcattcctt
     1501 tgggtatgag ataatcgtat agttccttcc tactaaatag agtcttaatt cttttttttt
     1561 ttttcctctt tgacccatgg ctctctaggt ccatccttgg gcttctcatt tgtctcttga
     1621 gattggctta catactttgc tcacctctgt tcagttgcta catagatagt ttctttaaac
     1681 attgaacatt tattttgcag ttcagcttaa gaatattaat ccacccgcag aagcacttgg
     1741 cgctgactgc agttctgaga acacaatggc tacacgggtg gatgggagga cgtcagccac
     1801 ttccctctca agcgtgttct cccgttatcc actcagaacc aaagccagga gggttggaat
     1861 ttatatagaa aaaaaaaata aattgcttcc aatgtaatct attttttaaa tgattattta
     1921 aaagaaacta aactaattta agagtttatg taattgtagt actgaaaaat tatttttatt
     1981 actagttttg atagattgtt tttacctcgc atttggtata tgccaaaaca gcaagtcagc
     2041 ccttataaaa taaattcttt tttt
//
