LOCUS       NM_011875               1563 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus proteasome (prosome, macropain) 26S subunit,
            non-ATPase, 13 (Psmd13), mRNA.
ACCESSION   NM_011875
VERSION     NM_011875.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Gomes,A.V., Zong,C., Edmondson,R.D., Li,X., Stefani,E., Zhang,J.,
            Jones,R.C., Thyparambil,S., Wang,G.W., Qiao,X., Bardag-Gorce,F. and
            Ping,P.
  TITLE     Mapping the murine cardiac 26S proteasome complexes
  JOURNAL   Circ Res 99 (4), 362-371 (2006)
   PUBMED   16857966
REFERENCE   3  (bases 1 to 1563)
  AUTHORS   Terret,M.E., Wassmann,K., Waizenegger,I., Maro,B., Peters,J.M. and
            Verlhac,M.H.
  TITLE     The meiosis I-to-meiosis II transition in mouse oocytes requires
            separase activity
  JOURNAL   Curr Biol 13 (20), 1797-1802 (2003)
   PUBMED   14561405
REFERENCE   4  (bases 1 to 1563)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 1563)
  AUTHORS   Hoffman,L., Gorbea,C. and Rechsteiner,M.
  TITLE     Identification, molecular cloning, and characterization of subunit
            11 of the human 26S proteasome
  JOURNAL   FEBS Lett 449 (1), 88-92 (1999)
   PUBMED   10225435
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC107815.11.
            
            On Apr 28, 2007 this sequence version replaced NM_011875.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC029989.1, AK163017.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-173               AC107815.11        42306-42478         c
            174-252             AC107815.11        41294-41372         c
            253-287             AC107815.11        38450-38484         c
            288-343             AC107815.11        38306-38361         c
            344-387             AC107815.11        38027-38070         c
            388-474             AC107815.11        37767-37853         c
            475-646             AC107815.11        35396-35567         c
            647-726             AC107815.11        34461-34540         c
            727-852             AC107815.11        34252-34377         c
            853-915             AC107815.11        30329-30391         c
            916-996             AC107815.11        27375-27455         c
            997-1113            AC107815.11        27148-27264         c
            1114-1563           AC107815.11        26230-26679         c
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 86.09 cM"
     gene            1..1563
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /note="proteasome (prosome, macropain) 26S subunit,
                     non-ATPase, 13"
                     /db_xref="GeneID:23997"
                     /db_xref="MGI:MGI:1345192"
     exon            1..173
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..1209
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /note="26S proteasome regulatory subunit S11; 26S
                     proteasome regulatory subunit p40.5; 26S proteasome
                     regulatory subunit RPN9; 26S proteasome subunit p40.5"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 13"
                     /protein_id="NP_036005.1"
                     /db_xref="CCDS:CCDS21990.1"
                     /db_xref="GeneID:23997"
                     /db_xref="MGI:MGI:1345192"
                     /translation="MKDVPAFLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDF
                     VQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTRE
                     KVKSSDEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSS
                     KYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLM
                     HPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTLKCAWGQQPDLAANEAQLLRKIQLLC
                     LMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMT
                     WVQPRVLDLQQIKGMKDRLELWCTDVKSMEMLVEHQAQDILT"
     exon            174..252
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            253..287
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            288..343
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            344..387
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            388..474
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            475..646
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            647..726
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            727..852
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            853..915
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            916..996
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1113
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1563
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1543..1548
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /note="hexamer: AATAAA"
     polyA_site      1563
                     /gene="Psmd13"
                     /gene_synonym="S11"
                     /note="major polyA site"
ORIGIN      
        1 gtgagcgagc acttccgtgc gccatccctg ccggttctga ctgcttagtg cttgtgttgt
       61 tcccagctct ctgcaatcat gaaggatgtg ccggccttct tacagcagag tcagagctcc
      121 gggccgggcc aggctgccgt ttggcaccgt ttggaagagc tgtacacgaa gaagttgtgg
      181 catcagctga cacttgaggt gcttgatttt gtgcaggacc catgctttgc ccaaggagat
      241 ggtctcatta agctttatga aaacttcatc agtgagtttg agcacagggt aaaccctctg
      301 tccctggtag aaataattct ccatgtggtt agacagatga ccgatcctaa tgtggctctt
      361 acttttctgg aaaagactcg tgagaaggta aaaagtagtg atgaagccgt gatcttgtgt
      421 aagacggcaa tcggagctct aaaattaaac atcggcgatc tgcaggctac aaaggaaacc
      481 attgaagatg ttgaagagat gctcaacaat ctccctggtg tgacgtccgt tcacagtcgt
      541 ttctatgatc tctccagtaa atactatcaa acaatcggaa accacgcgtc ctactacaaa
      601 gatgctctac ggtttctggg ctgtgtggat atcaaggacc tgccagtgtc agaacagcaa
      661 gagagagcct tcacactggg gcttgctgga cttctcggag agggagtttt taactttgga
      721 gaacttctca tgcaccctgt gctggagtca ctgagggaca ctgaccggca gtggctgatt
      781 gacaccctgt acgctttcaa tagcggtgct gtggataggt tccagacact gaagtgtgcc
      841 tggggccagc agcctgactt agcagccaac gaagcccagc ttctgaggaa gatccagctg
      901 ttgtgcctta tggagatgac tttcacacgg cctgccaacc acagacaact cacttttgaa
      961 gaaattgcca aaagtgccaa aatcactgtc aacaaggtgg agttgctggt gatgaaggca
     1021 ctctcggtgg ggctggtgag aggcagcata gacgaggtgg acaagcgggt tcacatgacg
     1081 tgggtgcagc cgcgagtgct ggatttgcag cagatcaagg ggatgaagga ccgtctggag
     1141 ctttggtgca ctgatgtgaa gagcatggag atgctggtgg aacaccaggc tcaggacatc
     1201 ctcacctagt gccccggtgt cctgcagacc ctgccgcacc ttgcaaggca attctgtggc
     1261 ccccgaaacc atcagcagag atctgtattc acttgggatg gagtttagga tcctgctcgg
     1321 agtgggaact gttcttgcta taaaagcaga gaactgtcgc tggtgggggg gtgactactt
     1381 ggagaaggct cctgtgtggg gtcttttgta gcctgcaagg ggtgggaagg ggggctccag
     1441 gcctaggtga tgagaaaggg cacgaatggg aatggggaca gggtagtctc cacccagctc
     1501 cacctgagtg gactttgtcc agtgtggtct gagtgctgct ctaataaatg ccttggcatt
     1561 gtt
//
