LOCUS       NM_178616               1743 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus proteasome (prosome, macropain) 26S subunit,
            non-ATPase, 11 (Psmd11), mRNA.
ACCESSION   NM_178616
VERSION     NM_178616.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Wang,A., Wang,J., Tian,K., Huo,D., Ye,H., Li,S., Zhao,C., Zhang,B.,
            Zheng,Y., Xu,L., Hua,X., Wang,K., Wu,Q.F., Wu,X., Zeng,T., Liu,Y.
            and Zhou,Y.
  TITLE     An epigenetic circuit controls neurogenic programs during neocortex
            development
  JOURNAL   Development 148 (22) (2021)
   PUBMED   35020876
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Zhao,L., Zhao,J., Zhang,Y., Wang,L., Zuo,L., Niu,A., Zhang,W.,
            Xue,X., Zhao,S., Sun,C., Li,K., Wang,J., Bian,Z., Zhao,X., Saur,D.,
            Seidler,B., Wang,C. and Qi,T.
  TITLE     Generation and identification of a conditional knockout allele for
            the PSMD11 gene in mice
  JOURNAL   BMC Dev Biol 21 (1), 4 (2021)
   PUBMED   33517884
  REMARK    GeneRIF: Generation and identification of a conditional knockout
            allele for the PSMD11 gene in mice.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1743)
  AUTHORS   Hamazaki,J., Hirayama,S. and Murata,S.
  TITLE     Redundant Roles of Rpn10 and Rpn13 in Recognition of Ubiquitinated
            Proteins and Cellular Homeostasis
  JOURNAL   PLoS Genet 11 (7), e1005401 (2015)
   PUBMED   26222436
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1743)
  AUTHORS   Gaillard,S., Lo Re,L., Mantilleri,A., Hepp,R., Urien,L.,
            Malapert,P., Alonso,S., Deage,M., Kambrun,C., Landry,M., Low,S.A.,
            Alloui,A., Lambolez,B., Scherrer,G., Le Feuvre,Y., Bourinet,E. and
            Moqrich,A.
  TITLE     GINIP, a Galphai-interacting protein, functions as a key modulator
            of peripheral GABAB receptor-mediated analgesia
  JOURNAL   Neuron 84 (1), 123-136 (2014)
   PUBMED   25242222
REFERENCE   5  (bases 1 to 1743)
  AUTHORS   Lo,J.C., Jamsai,D., O'Connor,A.E., Borg,C., Clark,B.J.,
            Whisstock,J.C., Field,M.C., Adams,V., Ishikawa,T., Aitken,R.J.,
            Whittle,B., Goodnow,C.C., Ormandy,C.J. and O'Bryan,M.K.
  TITLE     RAB-like 2 has an essential role in male fertility, sperm
            intra-flagellar transport, and tail assembly
  JOURNAL   PLoS Genet 8 (10), e1002969 (2012)
   PUBMED   23055941
REFERENCE   6  (bases 1 to 1743)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   7  (bases 1 to 1743)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   8  (bases 1 to 1743)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   9  (bases 1 to 1743)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   10 (bases 1 to 1743)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY092952.1, BC119138.1 and AK136049.1.
            
            On Mar 24, 2007 this sequence version replaced NM_178616.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK136049.1, AK076002.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                BY092952.1         2-30
            30-1514             BC119138.1         1-1485
            1515-1544           AK136049.1         1478-1507
            1545-1743           AK136049.1         1509-1707
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 47.89 cM"
     gene            1..1743
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /note="proteasome (prosome, macropain) 26S subunit,
                     non-ATPase, 11"
                     /db_xref="GeneID:69077"
                     /db_xref="MGI:MGI:1916327"
     exon            1..141
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..1319
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /note="26S proteasome regulatory subunit S9; 26S
                     proteasome regulatory subunit p44.5; 26S proteasome
                     regulatory subunit RPN6"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 11"
                     /protein_id="NP_848731.2"
                     /db_xref="CCDS:CCDS25133.1"
                     /db_xref="GeneID:69077"
                     /db_xref="MGI:MGI:1916327"
                     /translation="MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQ
                     VKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAA
                     TGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKM
                     DDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIH
                     AAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLA
                     LRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQN
                     LIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPP
                     VDKTYEAALETIQNMSKVVDSLYSKAKKLT"
     exon            142..243
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            244..368
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            369..440
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            441..498
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            499..693
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            694..838
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            839..899
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            900..962
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1088
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1124
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..1176
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1319
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     exon            1320..1743
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1552..1557
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /note="hexamer: AATAAA"
     polyA_site      1574
                     /gene="Psmd11"
                     /gene_synonym="1700089D09Rik; 1810019E17Rik;
                     2610024G20Rik; 2810055C24Rik; P44.5; S9"
                     /note="major polyA site"
ORIGIN      
        1 gtgtttccgg cgtcggcggc cgcggccggg gacggtgtga gagcggtaag atggcggccg
       61 cagcggtggt ggagttccag agagcccagt ctctactcag caccgaccgg gaggcctcca
      121 tcgacatcct ccactccatc gtgaaacgtg acattcaaga aaatgatgag gaggcagtcc
      181 aggtcaaaga gcagagcatc cttgaactgg gttctctcct ggcgaagact ggacaagctg
      241 ctgagcttgg aggactcctg aagtatgtac ggcctttctt gaattccatc agtaaagcta
      301 aagcagctcg tctggtccgg tctcttcttg atctgtttct agatatggaa gcagccacag
      361 ggcaggaggt cgagctatgt ttagagtgca tcgaatgggc caaatcagag aaaagaactt
      421 tcttacgcca agcattggag gcaaggctgg tgtctttgta ttttgatacc aagaggtacc
      481 aggaagcatt gcatttgggt tctcagctgc ttcgggagtt gaaaaagatg gatgataaag
      541 cccttttggt ggaagtacag cttttagaaa gcaaaactta ccatgctctg agtaatctgc
      601 cgaaagcccg agctgcctta acctctgctc gaaccacagc aaatgccatc tactgccccc
      661 ctaaattgca ggccaccctg gacatgcagt caggcattat tcatgcagca gaggagaagg
      721 actggaaaac tgcatactca tacttctatg aggcattcga aggctacgac tccattgata
      781 gccccaaggc catcacatct ctgaagtaca tgttgctgtg caaaatcatg ctcaacaccc
      841 cagaagatgt ccaggctttg gtgagcggaa agcttgcact tcggtatgca gggaggcaga
      901 cagaagcatt gaaatgtgtg gctcaagcta gcaagaacag atcactggca gattttgaaa
      961 aggccctgac agactacagg gcagagctcc gggatgaccc aatcatcagc acacatttgg
     1021 ccaagctgta cgataactta ctggaacaga atctgatccg ggtcatcgag cctttttccc
     1081 gagtccagat tgaacacata tctagcctca tcaaactctc caaggccgac gtggaaagaa
     1141 aattatcaca gatgattctt gacaagaagt ttcatgggat tttggaccag ggggagggtg
     1201 tcctgatcat tttcgatgaa cccccagtag ataaaactta tgaagctgct ctggaaacta
     1261 ttcagaacat gagtaaagta gtggactccc tctacagcaa agccaagaag ctgacataga
     1321 gttggatctg tagcggtcct ttggagagtg tgtgtggcgg gagagtgaac ccttggggaa
     1381 atgctaggag attcttttct ttctgttcca cttttcgctc ggaaagtttt taaccctcat
     1441 tggtgcatct gtatccagcg ataggcggcc agttctcatg taatccgtac tggccaacac
     1501 gggaatgggg aaattgctta aaaaaaaaga aaaagaaaaa aaaagattct aaataaaagg
     1561 aaaaaggctt acactaccta aagctgtgct ctctgcctcc tgggagaggg ccgcaaagcc
     1621 aggcaccctg ccaaccactg gggatcctca cccacctgct gggcgccacc tctcctcctc
     1681 ttcagaattg ggtgtttgct gaccatcaaa agcaacgact ttttattctg tttgtactga
     1741 acc
//
