LOCUS       NM_001282013            2354 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus proline-rich polypeptide 3 (Prr3), transcript variant
            4, mRNA.
ACCESSION   NM_001282013 NR_028507
VERSION     NM_001282013.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
REFERENCE   3  (bases 1 to 2354)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC112970.18.
            
            On May 30, 2020 this sequence version replaced NM_001282013.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927936.3248406.1, BU148736.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-537               AC112970.18        69706-70242
            538-666             AC112970.18        70695-70823
            667-737             AC112970.18        71169-71239
            738-800             AC112970.18        71507-71569
            801-1091            AC112970.18        75137-75427
            1092-2354           AC112970.18        76147-77409
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.81 cM"
     gene            1..2354
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /note="proline-rich polypeptide 3"
                     /db_xref="GeneID:75210"
                     /db_xref="MGI:MGI:1922460"
     exon            1..537
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /inference="alignment:Splign:2.1.0"
     exon            538..666
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /inference="alignment:Splign:2.1.0"
     exon            667..737
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /inference="alignment:Splign:2.1.0"
     exon            738..800
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /inference="alignment:Splign:2.1.0"
     CDS             767..1198
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /note="isoform c is encoded by transcript variant 4;
                     proline-rich protein 3; MHC class I region proline-rich
                     protein Cat56"
                     /codon_start=1
                     /product="proline-rich protein 3 isoform c"
                     /protein_id="NP_001268942.1"
                     /db_xref="CCDS:CCDS70807.1"
                     /db_xref="GeneID:75210"
                     /db_xref="MGI:MGI:1922460"
                     /translation="MANGKPGDPKSAFHRGPPGSRGRMIPPLLSLPPPPRGRGYIRGG
                     LGPRSSPYGRGWWGINAEPPFPGPGHGGPSRESFYKEARNPRRLRSWSLVKNTYPPKD
                     SPQMMEDKSDRPVCRHFSKKGHCRYEDHCAFYHPGVNGPPL"
     exon            801..1091
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..2354
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2334..2339
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /note="hexamer: AATAAA"
     polyA_site      2354
                     /gene="Prr3"
                     /gene_synonym="4930540G07Rik; Cat56"
                     /note="major polyA site"
ORIGIN      
        1 gcttccgctc ccgcttgtcc tgcagctgct tcttcttctg cttcacgctg aagggcttct
       61 tcctcggcat ggccccggag ccccggcccg ccctccgccg agctccccgc cgccgcaact
      121 gactccccgg ggcagccccc gccggcggcc cggggccctg gggaggcggg gccgcggtga
      181 cgtcagcagc gagcggcggg gagcggggag cggggcggcg gggatgcaag cggcggcacg
      241 tgagagtccg cgggtccggg atgcacggtg cggcgagcgg gagacgcgcg tgggaggccc
      301 gagccgactc cgtcacgggc gctaccaagt ggcagtcgcg ggagggggga cgcgtgtcac
      361 cgccgcccgg cgctcccggg agctgccact cacctggcgg gggccgggcg acggggcgag
      421 gacacgcccc accgcgcggc cgcctggaga ggatggcccc tggcgggaga gccgggactg
      481 cgctggctgc ccggtggact ggctgccccg tggactggcc tgcggcaaca ggactcgcca
      541 ttgccgcagc cgctatgccg aaacgaaaga agcaggacca gccgccgccg ctgccgcagc
      601 agcagcaaca tctcgcactg tctgagcggg acgagcctgg agatgaggag gatgagcgcc
      661 ccatgggtca accttctgtg aactactccc ccgagggaag gagaggagaa aaaaactatg
      721 atgggccaac agttaaggac cacccagcct tctgggccct ccccccatgg ctaacgggaa
      781 gcctggtgat cccaagtcag ctttccacag gggtcctcca ggatcaaggg gacggatgat
      841 tcccccactg ctgagtctcc cgcctcctcc ccggggtaga ggctacattc ggggaggcct
      901 cggtcctcga tctagcccgt atggtcgtgg ttggtggggt atcaatgccg aacctccttt
      961 tcctgggcca ggccatgggg gtccctctag ggaaagcttt tacaaagagg cgagaaaccc
     1021 acgaaggctc agaagctggt ctcttgtcaa gaatacctac ccacccaagg acagccccca
     1081 gatgatggaa gacaagtctg accgccctgt ctgccgacac ttttctaaga agggccactg
     1141 tcgatatgaa gaccattgtg ccttctacca tccaggcgtc aacggacctc ctctgtgaga
     1201 ctgtgccttc ccacccaggc tggaaggagc cctctgacct agtggccatg cactctctgt
     1261 ggctccatct tagctacttg aaggctcttc tgtcaccttc aagcactgac acatccaccc
     1321 ctttcatcat ctctcctatt tgaggtccag agctgtgatt gtcactagtg cacagtgcac
     1381 actgtcttct gatccaggct gtagagacct tcgggacccc atcttgctac ttttccactg
     1441 cctcctggat cttcccctct gccaaaagac tgctcaacag gaaacctttg gtgctgtttc
     1501 ttgtgcattt gtccacctgt ccctcggtat tgccctcagt tcccaagagc cctggagcag
     1561 tctcttatcc tctagctgct tgttttaagt cctttcacgt aaaaccccag tgtttgcagc
     1621 tgccaggaag tgcaccaggt tgtctggcct tgaggtcgag tttgagtgac tggtatagac
     1681 ttgctccttg aacggcctct acctgctttt ggacgtccta gtttctgtcc gtagcatgaa
     1741 ccccaccgct aaggcctgtg gtcactgtgc tttgtgaaac tgtacgccct ttgtagcctt
     1801 cctcggtgtc cgtggcggtt tttttttgtg tgtgtgtgtg tgtgacttcc caacactaga
     1861 gtaagttttt ctgccaaatc aagtgaggct cttggtgccc tctggagttc acctacctcc
     1921 caacatggga ggacgtgaga cttcttcaga ctgcctcccc atcgtgccct ctcctggtgt
     1981 cgggcattct gggtctgact ggccagtggt gtcttggaaa gcctcaggcg ggcctcccca
     2041 aacagctcct gcctggcccg ttttagttcg gctctgtcat tgtgaggcca ccgacccttt
     2101 ggtttgactt tgtgaaactc cacctgtctt tggatggaac ctgaacagtg ctgtcatctc
     2161 tgaccctctt ccttccccgg cactgcgtgt tttctgtgaa aacagcagtg aacatggtgg
     2221 gttttgaaca ggccctacgg aagtgggtca ggaggtgtgc acacaagagg agagagagct
     2281 gttggagaac taagaatgat ttttttttct ttttaacttt tttttatatt agtaataaac
     2341 acagtggaaa ccgg
//
