LOCUS       NM_001170911            1111 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus proline rich 13 (Prr13), transcript variant 2, mRNA.
ACCESSION   NM_001170911
VERSION     NM_001170911.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1111)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1111)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY285374.1, AK002430.1 and AK008894.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002430.1, BY702958.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BY285374.1         3-34
            33-1087             AK002430.1         1-1055
            1088-1111           AK008894.1         1166-1189
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 57.6 cM"
     gene            1..1111
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /note="proline rich 13"
                     /db_xref="GeneID:66151"
                     /db_xref="MGI:MGI:1913401"
     exon            1..86
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            87..125
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..520
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /codon_start=1
                     /product="proline-rich protein 13"
                     /protein_id="NP_001164382.1"
                     /db_xref="CCDS:CCDS27883.1"
                     /db_xref="GeneID:66151"
                     /db_xref="MGI:MGI:1913401"
                     /translation="MWNPNAGPNPYPPQVVCPGGSNPACPPPLNPAFPPGPCPPGIPQ
                     GNPAFPPCRPPYPVPQPGCPGYQPSGPYPPPYPPPAPGMCPVNPPAPGMVGPGIVIDK
                     KTRKKMKKAHKKSHKHHKHGKHSSSSSSSSSSDSD"
     exon            126..475
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            476..1111
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1064..1069
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1089
                     /gene="Prr13"
                     /gene_synonym="1110020C13Rik; 2010324E22Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcggaagtat agaatgaata ggagtgacca ggaagtgcga acccagactg agaaggagga
       61 caggagcggg ctggcgatct gggaaggctt gagctaacat ctcgacatgt ggaatcctaa
      121 tgctggaccg aatccatatc caccccaagt tgtgtgccca ggaggttcca atcctgcctg
      181 tccaccacct ctcaatcctg cctttccccc tggcccctgt cctcccggaa ttccccaggg
      241 aaacccagct ttccctccgt gtcgtccccc ttatcctgta ccacaaccag ggtgtccagg
      301 ataccaaccc tcaggtccct accctccccc atacccacca cctgctcctg gcatgtgccc
      361 cgtgaatcct ccggctcctg gcatggtggg tcccggaatc gtgatagaca agaagactcg
      421 gaagaaaatg aagaaagctc ataagaagtc gcacaagcat cacaagcacg ggaagcactc
      481 ctcctcttcc tcctcctctt ccagcagtga ctctgactga acgcagggcc tggagcctcc
      541 tcccctccag cctcaccagc tccactctcc caccaagctt cagctgtcat cctcgtacgg
      601 agtgaggggc attagccctc tgctccctgc cccactccta cctgtgcctt cccctgctgt
      661 tctgtcccgg ctgtcaaggg ctagctagca aaagcaaagc ggccttcttg atctgatcgt
      721 agctgatgag gtcagtgggg ggaactgtct tttgaagatg gcaagacctc tgagctaaat
      781 ggggagcacc attttaagat ctgcaccatg tgattttttt ttttcttcca ctttcttttg
      841 taacacttgt gacttgggtt tgtgacagtt tgtgatgaaa aacctctact tttgtaatgg
      901 cggcacatga gagtgattta atggcaactg tgttcccggc agggcttttg gatctcagta
      961 actgtcgagc tgctggaaag tgcagtctct ttacttggtg agctcttttg ggacccgact
     1021 tattccttag ttcagtatgt tatctttgat ggctctaagt ccaaataaaa gttcttcttc
     1081 caggttctac tcacctgtgc cattaccttg a
//
