LOCUS       NM_026364               1871 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus phosphoribosyl pyrophosphate synthetase-associated
            protein 1 (Prpsap1), transcript variant 3, mRNA.
ACCESSION   NM_026364 XM_001481297 XM_181343
VERSION     NM_026364.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645851.8.
            
            On Apr 13, 2022 this sequence version replaced NM_026364.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK077439.1, BC029621.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-301               AL645851.8         27658-27958         c
            302-354             AL645851.8         25728-25780         c
            355-421             AL645851.8         23479-23545         c
            422-594             AL645851.8         17262-17434         c
            595-710             AL645851.8         16135-16250         c
            711-766             AL645851.8         15670-15725         c
            767-912             AL645851.8         14812-14957         c
            913-983             AL645851.8         10554-10624         c
            984-1130            AL645851.8         9787-9933           c
            1131-1871           AL645851.8         8425-9165           c
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 81.34 cM"
     gene            1..1871
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /note="phosphoribosyl pyrophosphate synthetase-associated
                     protein 1"
                     /db_xref="GeneID:67763"
                     /db_xref="MGI:MGI:1915013"
     exon            1..301
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..1289
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /EC_number="2.7.6.1"
                     /note="isoform 3 is encoded by transcript variant 3;
                     phosphoribosyl pyrophosphate synthase-associated protein
                     1; PRPP synthetase-associated protein 1; 39 kDa
                     phosphoribosypyrophosphate synthetase-associated protein;
                     PRPP synthase-associated protein 1; 39 kDa
                     phosphoribosypyrophosphate synthase-associated protein"
                     /codon_start=1
                     /product="phosphoribosyl pyrophosphate synthase-associated
                     protein 1 isoform 3"
                     /protein_id="NP_080640.1"
                     /db_xref="CCDS:CCDS48985.1"
                     /db_xref="GeneID:67763"
                     /db_xref="MGI:MGI:1915013"
                     /translation="MPRKLLLLPPLSACSALRVPRARPAASPAMNAARTGYRVFSANS
                     TAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTA
                     VMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHII
                     TMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAE
                     RLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDV
                     GGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESPIDEV
                     VVTNTVPHELQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD"
     exon            302..354
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            355..421
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            422..594
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            595..710
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            711..766
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            767..912
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            913..983
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1130
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1871
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1810..1815
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /note="hexamer: AATAAA"
     polyA_site      1829
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /note="major polyA site"
     polyA_site      1871
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
ORIGIN      
        1 gcggggtccg aaggaggctg cggcgctcgg ctgcgccttc ggtgcggctt ggagatccgg
       61 acgcatctgt gtcgcgcctc gtccctctgc ggccccgcgc ggaccgctgt agccgcgcct
      121 cgggccggag gatgcccagg aagctgctgc tgctgccccc gctgtccgcg tgctctgctc
      181 tgcgtgtccc gcgggctcgg cccgccgcct cgccggccat gaacgcagcc cgcaccggct
      241 accgagtctt ctcggccaac tccacggccg cctgcacgga actggccaag cgcatcactg
      301 agcgtcttgg tgctgaattg gggaaatctg ttgtatatca ggagaccaat ggagaaacaa
      361 gagttgaaat caaagaatct gttcgtggcc aagatatttt cattatacag acaataccca
      421 gagatgtgaa tacggctgtg atggagctgc tgatcatggc gtatgcactg aagaccgcct
      481 gcgccaggaa tatcattggc gtcatcccct acttccccta cagcaagcaa agcaagatgc
      541 gcaagagggg ctccattgtg tgcaagctcc tggcatccat gctggcgaaa gctggtttaa
      601 ctcacattat cactatggac ctccaccaaa aggaaataca aggctttttc agctttcccg
      661 tggacaacct tagagcctca cctttcctgc ttcagtatat ccaggaagaa attccaaatt
      721 acagaaatgc agtcattgta gctaagtctc ctgatgctgc aaaaagggct cagtcctatg
      781 ctgaaaggct ccgcctgggg ctggctgtga tccacggaga agcgcagtgt acagagctgg
      841 atatggacga cggtcggcac tccccaccca tggtcaagaa cgccacggtg cacccaggcc
      901 tggagctgcc cttaatgatg gccaaagaga agccaccaat aacagtggtc ggagacgtcg
      961 ggggacgcat tgcgattata gtggatgaca tcattgatga cgtggagagc tttgttgctg
     1021 ctgcagagat cctgaaagag agaggtgctt acaagatcta tgtcatggcc acgcacggca
     1081 tcctgtctgc tgaagccccc cgtctgattg aggagtcccc cattgatgag gtggtggtga
     1141 caaacactgt ccctcatgaa cttcagaaac tacagtgtcc caagataaag actgtggaca
     1201 tcagcctgat tctttctgag gcgattcgga gaatccacaa tggagagtct atggcttacc
     1261 tcttccggaa catcacagtg gatgactagc tcagagctgc cctgacctgc agaggcggac
     1321 agacacagcg gggtgtcagc ctgcaaatgg gctgcagtca gggagtctct accaggctgc
     1381 tggctccctt ctctccccat attcagagtg cagtacctat ctggaatgtg ttctgctgaa
     1441 taagcaggca tccagttgta ggctggtaac accttccagt aagacaagaa gcctgaccgc
     1501 ccaagactgg gtgcatggca cggccctcct gtccctgtca tcagccttgc tcttagtgct
     1561 gagcagaccc tgacggtttg ttcactggtg tctgctctgg gaaggcagct gagccgccct
     1621 ggcactggtg tgtgcagttg tcctctccct gcacaaggtc aactgaatct gtcagggagt
     1681 cacttttctt tcagaaactg ctgtgcctgc tgccattaaa caaggaagtg tccctgcctg
     1741 ctttcactga gctagtcaga tgagagagta gcaccctgtc cctcagaacc gtgtcactcg
     1801 gaagctgcaa ataaaagttc cttgtctccc ttgggtcttc agtcggctgc tgagctccca
     1861 gctccctcct a
//
