LOCUS       NM_001404667            1886 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus phosphoribosyl pyrophosphate synthetase-associated
            protein 1 (Prpsap1), transcript variant 1, mRNA.
ACCESSION   NM_001404667 XM_006534017
VERSION     NM_001404667.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645851.8.
            
            On Apr 13, 2022 this sequence version replaced XM_006534017.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13861890.96496.1,
                                           SRR7345562.847218.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164142 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-301               AL645851.8         27658-27958         c
            302-354             AL645851.8         25728-25780         c
            355-421             AL645851.8         23479-23545         c
            422-609             AL645851.8         17262-17449         c
            610-725             AL645851.8         16135-16250         c
            726-781             AL645851.8         15670-15725         c
            782-927             AL645851.8         14812-14957         c
            928-998             AL645851.8         10554-10624         c
            999-1145            AL645851.8         9787-9933           c
            1146-1886           AL645851.8         8425-9165           c
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 81.34 cM"
     gene            1..1886
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /note="phosphoribosyl pyrophosphate synthetase-associated
                     protein 1"
                     /db_xref="GeneID:67763"
                     /db_xref="MGI:MGI:1915013"
     exon            1..301
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..1304
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /EC_number="2.7.6.1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     phosphoribosyl pyrophosphate synthase-associated protein
                     1; PRPP synthetase-associated protein 1; 39 kDa
                     phosphoribosypyrophosphate synthetase-associated protein;
                     PRPP synthase-associated protein 1; 39 kDa
                     phosphoribosypyrophosphate synthase-associated protein"
                     /codon_start=1
                     /product="phosphoribosyl pyrophosphate synthase-associated
                     protein 1 isoform 1"
                     /protein_id="NP_001391596.1"
                     /db_xref="GeneID:67763"
                     /db_xref="MGI:MGI:1915013"
                     /translation="MPRKLLLLPPLSACSALRVPRARPAASPAMNAARTGYRVFSANS
                     TAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPSFYCFR
                     DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAG
                     LTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRA
                     QSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPIT
                     VVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEES
                     PIDEVVVTNTVPHELQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD"
     exon            302..354
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            355..421
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            422..609
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            610..725
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            726..781
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            782..927
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            928..998
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1145
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1886
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1825..1830
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /note="hexamer: AATAAA"
     polyA_site      1844
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
                     /note="major polyA site"
     polyA_site      1886
                     /gene="Prpsap1"
                     /gene_synonym="5730409F23Rik; PAP39"
ORIGIN      
        1 gcggggtccg aaggaggctg cggcgctcgg ctgcgccttc ggtgcggctt ggagatccgg
       61 acgcatctgt gtcgcgcctc gtccctctgc ggccccgcgc ggaccgctgt agccgcgcct
      121 cgggccggag gatgcccagg aagctgctgc tgctgccccc gctgtccgcg tgctctgctc
      181 tgcgtgtccc gcgggctcgg cccgccgcct cgccggccat gaacgcagcc cgcaccggct
      241 accgagtctt ctcggccaac tccacggccg cctgcacgga actggccaag cgcatcactg
      301 agcgtcttgg tgctgaattg gggaaatctg ttgtatatca ggagaccaat ggagaaacaa
      361 gagttgaaat caaagaatct gttcgtggcc aagatatttt cattatacag acaataccca
      421 gtttttactg ttttagagat gtgaatacgg ctgtgatgga gctgctgatc atggcgtatg
      481 cactgaagac cgcctgcgcc aggaatatca ttggcgtcat cccctacttc ccctacagca
      541 agcaaagcaa gatgcgcaag aggggctcca ttgtgtgcaa gctcctggca tccatgctgg
      601 cgaaagctgg tttaactcac attatcacta tggacctcca ccaaaaggaa atacaaggct
      661 ttttcagctt tcccgtggac aaccttagag cctcaccttt cctgcttcag tatatccagg
      721 aagaaattcc aaattacaga aatgcagtca ttgtagctaa gtctcctgat gctgcaaaaa
      781 gggctcagtc ctatgctgaa aggctccgcc tggggctggc tgtgatccac ggagaagcgc
      841 agtgtacaga gctggatatg gacgacggtc ggcactcccc acccatggtc aagaacgcca
      901 cggtgcaccc aggcctggag ctgcccttaa tgatggccaa agagaagcca ccaataacag
      961 tggtcggaga cgtcggggga cgcattgcga ttatagtgga tgacatcatt gatgacgtgg
     1021 agagctttgt tgctgctgca gagatcctga aagagagagg tgcttacaag atctatgtca
     1081 tggccacgca cggcatcctg tctgctgaag ccccccgtct gattgaggag tcccccattg
     1141 atgaggtggt ggtgacaaac actgtccctc atgaacttca gaaactacag tgtcccaaga
     1201 taaagactgt ggacatcagc ctgattcttt ctgaggcgat tcggagaatc cacaatggag
     1261 agtctatggc ttacctcttc cggaacatca cagtggatga ctagctcaga gctgccctga
     1321 cctgcagagg cggacagaca cagcggggtg tcagcctgca aatgggctgc agtcagggag
     1381 tctctaccag gctgctggct cccttctctc cccatattca gagtgcagta cctatctgga
     1441 atgtgttctg ctgaataagc aggcatccag ttgtaggctg gtaacacctt ccagtaagac
     1501 aagaagcctg accgcccaag actgggtgca tggcacggcc ctcctgtccc tgtcatcagc
     1561 cttgctctta gtgctgagca gaccctgacg gtttgttcac tggtgtctgc tctgggaagg
     1621 cagctgagcc gccctggcac tggtgtgtgc agttgtcctc tccctgcaca aggtcaactg
     1681 aatctgtcag ggagtcactt ttctttcaga aactgctgtg cctgctgcca ttaaacaagg
     1741 aagtgtccct gcctgctttc actgagctag tcagatgaga gagtagcacc ctgtccctca
     1801 gaaccgtgtc actcggaagc tgcaaataaa agttccttgt ctcccttggg tcttcagtcg
     1861 gctgctgagc tcccagctcc ctccta
//
