LOCUS       NM_013639               1861 bp    mRNA    linear   ROD 17-SEP-2024
DEFINITION  Mus musculus peripherin (Prph), transcript variant 1, mRNA.
ACCESSION   NM_013639 XM_975419 XM_975462
VERSION     NM_013639.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Butts,J.C., Wu,S.R., Durham,M.A., Dhindsa,R.S., Revelli,J.P.,
            Ljungberg,M.C., Saulnier,O., McLaren,M.E., Taylor,M.D. and
            Zoghbi,H.Y.
  TITLE     A single-cell transcriptomic map of the developing Atoh1 lineage
            identifies neural fate decisions and neuronal diversity in the
            hindbrain
  JOURNAL   Dev Cell 59 (16), 2171-2188 (2024)
   PUBMED   39106860
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Lettieri,A., Oleari,R., van den Munkhof,M.H., van Battum,E.Y.,
            Verhagen,M.G., Tacconi,C., Spreafico,M., Paganoni,A.J.J.,
            Azzarelli,R., Andre',V., Amoruso,F., Palazzolo,L., Eberini,I.,
            Dunkel,L., Howard,S.R., Fantin,A., Pasterkamp,R.J. and Cariboni,A.
  TITLE     SEMA6A drives GnRH neuron-dependent puberty onset by tuning median
            eminence vascular permeability
  JOURNAL   Nat Commun 14 (1), 8097 (2023)
   PUBMED   38062045
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1861)
  AUTHORS   Vermeiren,S., Cabochette,P., Dannawi,M., Desiderio,S., San
            Jose,A.S., Achouri,Y., Kricha,S., Sitte,M., Salinas-Riester,G.,
            Vanhollebeke,B., Brunet,J.F. and Bellefroid,E.J.
  TITLE     Prdm12 represses the expression of the visceral neuron determinants
            Phox2a/b in developing somatosensory ganglia
  JOURNAL   iScience 26 (12), 108364 (2023)
   PUBMED   38025786
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1861)
  AUTHORS   Lee,Y., Yeo,I.S., Kim,N., Lee,D.K., Kim,K.T., Yoon,J., Yi,J.,
            Hong,Y.B., Choi,B.O., Kosodo,Y., Kim,D., Park,J. and Song,M.R.
  TITLE     Transcriptional control of motor pool formation and motor circuit
            connectivity by the LIM-HD protein Isl2
  JOURNAL   Elife 12, e84596 (2023)
   PUBMED   37869988
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1861)
  AUTHORS   Causeret,F., Fayon,M., Moreau,M.X., Ne,E., Oleari,R., Parras,C.,
            Cariboni,A. and Pierani,A.
  TITLE     Diversity within olfactory sensory derivatives revealed by the
            contribution of Dbx1 lineages
  JOURNAL   J Comp Neurol 531 (12), 1229-1243 (2023)
   PUBMED   37125418
REFERENCE   6  (bases 1 to 1861)
  AUTHORS   Pernas-Alonso,R., Schaffner,A.E., Hansen,C.T., Barker,J.L. and di
            Porzio,U.
  TITLE     Acetylcholine esterase and peripherin mRNA level decrease in
            wobbler mouse
  JOURNAL   Neuroreport 6 (4), 597-600 (1995)
   PUBMED   7605908
REFERENCE   7  (bases 1 to 1861)
  AUTHORS   Moncla,A., Landon,F., Mattei,M.G. and Portier,M.M.
  TITLE     Chromosomal localisation of the mouse and human peripherin genes
  JOURNAL   Genet Res 59 (2), 125-129 (1992)
   PUBMED   1378416
REFERENCE   8  (bases 1 to 1861)
  AUTHORS   Karpov,V., Landon,F., Djabali,K., Gros,F. and Portier,M.M.
  TITLE     Structure of the mouse gene encoding peripherin: a neuronal
            intermediate filament protein
  JOURNAL   Biol Cell 76 (1), 43-48 (1992)
   PUBMED   1294287
  REMARK    Erratum:[Biol Cell. 2003 Dec;53(4):427]
REFERENCE   9  (bases 1 to 1861)
  AUTHORS   Pendleton,J.W., Violette,S.M., Hunihan,L.W., Greene,L.A. and
            Ruddle,F.H.
  TITLE     The peripherin gene maps to mouse chromosome 15
  JOURNAL   Genomics 9 (2), 369-372 (1991)
   PUBMED   2004788
REFERENCE   10 (bases 1 to 1861)
  AUTHORS   Landon,F., Lemonnier,M., Benarous,R., Huc,C., Fiszman,M., Gros,F.
            and Portier,M.M.
  TITLE     Multiple mRNAs encode peripherin, a neuronal intermediate filament
            protein
  JOURNAL   EMBO J 8 (6), 1719-1726 (1989)
   PUBMED   2767051
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157610.2.
            
            On Aug 30, 2022 this sequence version replaced NM_013639.2.
            
            Transcript Variant: This variant (1) represents the predominant
            transcript and encodes the longest isoform (1).
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X15475.1, SRR14995045.781928.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-591               AC157610.2         72793-73383         c
            592-652             AC157610.2         72392-72452         c
            653-748             AC157610.2         72120-72215         c
            749-1138            AC157610.2         71398-71787         c
            1139-1359           AC157610.2         71078-71298         c
            1360-1409           AC157610.2         70939-70988         c
            1410-1489           AC157610.2         70661-70740         c
            1490-1861           AC157610.2         69583-69954         c
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 55.72 cM"
     gene            1..1861
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /note="peripherin"
                     /db_xref="GeneID:19132"
                     /db_xref="MGI:MGI:97774"
     exon            1..591
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            592..652
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            653..748
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            749..1138
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1359
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..1409
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1489
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     exon            1490..1861
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1839..1844
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /note="hexamer: AATAAA"
     polyA_site      1861
                     /gene="Prph"
                     /gene_synonym="Prph1"
                     /note="major polyA site"
ORIGIN      
        1 ccttgccacc cggcctagtt ctgccaagcg ctgaatgcca tcttccgcca gcatgagcca
       61 tcatcactcg tcgggcctgc ggtccagcat cagctccacc tcgtaccgcc ggacctttgg
      121 gccgccgccc tcactgtccc ccggggcttt ctcctactcg tccagctctc gcttctccag
      181 cagccgcctg ctgggctcgg ggtccccgag ctcctcggcg cggctgggca gcttccgtgc
      241 ccctcgagcg ggggcactgc gcttgccctc ggagcgcctc gatttctcca tggccgaggc
      301 cctcaaccaa gagttcctgg ccactcggag caacgagaag caagagttac aggagctcaa
      361 cgaccgcttc gccaacttca tcgagaaggt gcgcttcttg gagcagcaga acgcagccct
      421 gcgcggggag ctgagccagg cgcggggcca ggagccggcg cgcgccgacc agctttgcca
      481 gcaggagctg cgcgagctgc ggcgcgaact ggagctgctg ggccgggagc gcgaccgggt
      541 gcaggtggag cgggacgggc tggcggagga cctagcggcg ctcaagcaga ggttagaaga
      601 agaaacccgc aagcgggagg atgcggagca caacctggtg ctcttccgta aggacgtgga
      661 cgacgccact ctgtcccgcc tagaactgga gcgcaagatt gagtctctga tggatgaaat
      721 tgagttcctc aagaagctac acgaagagga acttcgagac ctgcaggtga gcgtagagag
      781 ccagcaggtg cagcaggtgg aggtagaggc aacagtgaag ccagagctga cggcggcgct
      841 gagggacatc cgtgcacagt acgagaacat cgcggcaaag aatctgcagg aggcagagga
      901 gtggtataag tcgaaagtgc gagagcattg ggggaaccct gggggaccaa gggtggggag
      961 gcactgggaa tggcggtgcg catcccagcc gggcttgtct gctaccgcgc agtatgctga
     1021 cctgtcggac gccgccaacc gcaaccatga ggccctacgc caggccaagc aagagatgaa
     1081 cgagtctcga cgtcagatcc agagtctgat gtgcgaggtg gatgggctgc gaggcacgaa
     1141 tgaggcgctg ctcagacagc tgcgggagct ggaagagcag ttcgccctgg aggctggagg
     1201 gtaccaagca ggcgcagcac ggctggagga agagcttcga cagctgaagg aagagatggc
     1261 gaggcacctg cgagagtacc aggagctcct taacgtcaag atggccctgg acatcgagat
     1321 agccacctac aggaagctac tggaagggga ggagagccgg atctcagtgc cggttcattc
     1381 ctttgcctct ctaagtttaa agacgactgt gcctgagatg gagcctctcc aggatagcca
     1441 cagcaagaag atggttctga tcaggacaat tgagacccgg gatggggaga aggtggtgac
     1501 agagtcccag aaggaacagc acagtgacct ggacaagtct tctatccaca gctactgagg
     1561 cctcagccag agctctgacc ctgatctcag cctattccta agcttggccc tccccagcac
     1621 cagtctgtat ccagtcctgc tctgcatgcc acagcccctg cctgccaagc aagcgccagc
     1681 ctgatccaga ggctgggcct cttcccgatg cataggtgtg acccatagct ttcttgtcct
     1741 tgtaagaggt ggataaagat acccaggaca gcaaatctac tcaagaatga ccccatggtc
     1801 tgtggggtgg gccagagtgt gggactcact ctgagtcaaa taaaactgct actgagagaa
     1861 a
//
