LOCUS       NM_172697               1519 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus PRP38 pre-mRNA processing factor 38 (yeast) domain
            containing A (Prpf38a), mRNA.
ACCESSION   NM_172697
VERSION     NM_172697.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY283675.1, BC024734.1, BC059875.1 and AV323663.1.
            
            On Apr 25, 2009 this sequence version replaced NM_172697.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK075925.1, SRR1660813.138780.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                BY283675.1         2-28
            28-1423             BC024734.1         1-1396
            1424-1513           BC059875.1         2800-2889
            1514-1519           AV323663.1         256-261
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.64 cM"
     gene            1..1519
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /note="PRP38 pre-mRNA processing factor 38 (yeast) domain
                     containing A"
                     /db_xref="GeneID:230596"
                     /db_xref="MGI:MGI:1916962"
     exon            1..352
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             223..1161
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /codon_start=1
                     /product="pre-mRNA-splicing factor 38A"
                     /protein_id="NP_766285.2"
                     /db_xref="CCDS:CCDS18452.1"
                     /db_xref="GeneID:230596"
                     /db_xref="MGI:MGI:1916962"
                     /translation="MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTA
                     ELVVDKAMELKFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRML
                     GALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDI
                     ILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYR
                     DLDKPRRSPALRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHR
                     SRSKSPGHHRSHRHRSHSKSPERSKKSHKKSRRGNE"
     exon            353..512
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            513..634
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            635..720
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            721..831
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            832..944
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            945..971
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1069
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1118
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1519
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1492..1497
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1517
                     /gene="Prpf38a"
                     /gene_synonym="2410002M20Rik"
                     /note="major polyA site"
ORIGIN      
        1 aatttgcttg ggccctctct ggtgcggggt gtgcgtattc cggcgaaaga gttctacgcc
       61 acagcttccg gtacgaagct ggtggctttc cgcggtcgca agggattcct taatgtttcc
      121 ctagcctccg gtagtccttt tttttttttc ccttctttta aataaatact gaatgtgacg
      181 tattaagcaa gccgacggaa atagaattga aagagttcta aaatggcgaa ccgtacagtg
      241 aaggatgccc acagcatcca tggcaccaac cctcagtatc tggtggagaa gatcatccgg
      301 acgcgaatct atgaatcaaa gtactggaaa gaagagtgtt ttggacttac agctgaactt
      361 gtagtggaca aagccatgga gttaaagttc gttggtggtg tgtatggtgg aaacataaag
      421 ccaactcctt ttttgtgttt aaccttgaaa atgcttcaga ttcaacctga gaaggatatc
      481 attgttgagt tcataaaaaa tgaagatttc aagtatgtcc ggatgctggg ggcactttac
      541 atgcggctca caggaactgc aattgattgc tacaagtact tggagccttt gtacaatgac
      601 tatcgaaaaa tcaagagcca gaaccgaaat ggagagtttg tgctgatgca tgtagatgag
      661 ttcatttatg aactcctgca cagtgagaga gtctgtgata tcattttgcc ccggctacag
      721 aaacggtatg tgctggaaga agctgagcaa ctggagcctc gagttagtgc cctagaagag
      781 gacatggatg atgtggagtc tagtgaggaa gaggaggagg aagatgagaa gcttgaaaga
      841 gtgccatcac ctgaccatcg aagaagaagc tacagagatt tggacaagcc aaggcgttca
      901 cctgcactgc gctacaggag gagccggagt cgttctccca gaaggcggag tagatcccct
      961 aaaagaagaa gtccttctcc ccgaagagaa aggcatagga gcaagagtcc acgacgccat
     1021 cggagcaggt ctagagacag acgacacagg tcccgctcta aatccccagg tcaccaccgt
     1081 agtcacagac atagaagcca ctcaaagtct cctgaaaggt ctaagaaaag ccacaagaag
     1141 agccggaggg gaaatgagta atggatgcat cttgactttg gtccaaatga cctcctgtgg
     1201 ctatgagagc atctgtttaa gtggaatgat caagatctcc tcttcaggca gctatgagta
     1261 ttttgggttt ttcaaaatca acttcttctt ttgttgggtt ttgtttttat tttaatatta
     1321 cagaggtgct aagttttgta tctctttgga ttataaccaa cagctttgaa gagtgttttt
     1381 gaccaaatca aggtcaagtt ttggcctaac ccactatggt tattcatact tagcagggtc
     1441 aagaagacct gggaatttga gaggtaaaaa gatgtgatcc tttcatttgt aattaaactt
     1501 gccacagttc tcattttct
//
