LOCUS       NM_026465               2037 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus prolyl-tRNA synthetase domain containing 1 (Prorsd1),
            transcript variant 2, mRNA.
ACCESSION   NM_026465
VERSION     NM_026465.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   De Angelis,M.T., Russo,F., D'Angelo,F., Federico,A., Gemei,M., Del
            Vecchio,L., Ceccarelli,M., De Felice,M. and Falco,G.
  TITLE     Novel pancreas organogenesis markers refine the pancreatic
            differentiation roadmap of embryonic stem cells
  JOURNAL   Stem Cell Rev Rep 10 (2), 269-279 (2014)
   PUBMED   24390927
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK008574.1 and AK085965.1.
            
            On Jun 18, 2010 this sequence version replaced NM_026465.2.
            
            Transcript Variant: This variant (2) lacks an alternate exon
            resulting in a frameshift, compared to variant 1. The resulting
            isoform (2) has a longer and distinct C-terminus, compared to
            isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY708462.1, AK008574.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849378, SAMN00849379
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-739               AK008574.1         2-740
            740-2037            AK085965.1         844-2141
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 16.75 cM"
     gene            1..2037
                     /gene="Prorsd1"
                     /gene_synonym="2010316F05Rik; Ncrna00117; Prdxdd1"
                     /note="prolyl-tRNA synthetase domain containing 1"
                     /db_xref="GeneID:67939"
                     /db_xref="MGI:MGI:1915189"
     exon            1..117
                     /gene="Prorsd1"
                     /gene_synonym="2010316F05Rik; Ncrna00117; Prdxdd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..543
                     /gene="Prorsd1"
                     /gene_synonym="2010316F05Rik; Ncrna00117; Prdxdd1"
                     /note="isoform 2 is encoded by transcript variant 2; prdX
                     deacylase domain-containing protein 1; prolyl-tRNA
                     synthetase associated domain-containing protein 1;
                     PrdX-deacylase domain 1"
                     /codon_start=1
                     /product="prolyl-tRNA synthetase associated
                     domain-containing protein 1 isoform 2"
                     /protein_id="NP_080741.1"
                     /db_xref="CCDS:CCDS24495.1"
                     /db_xref="GeneID:67939"
                     /db_xref="MGI:MGI:1915189"
                     /translation="MAGSELRAELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKG
                     AHSKNLFLKDKKKKNYWLVTVLHDRQINLNDLGKQLGVGSGNLRFADETAMLEKLKVG
                     QGCATPLSLFCDDGDVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLIFVKATG
                     HDPIILNFD"
     exon            118..2037
                     /gene="Prorsd1"
                     /gene_synonym="2010316F05Rik; Ncrna00117; Prdxdd1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      891..896
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prorsd1"
                     /gene_synonym="2010316F05Rik; Ncrna00117; Prdxdd1"
                     /note="hexamer: AATAAA"
     polyA_site      918
                     /gene="Prorsd1"
                     /gene_synonym="2010316F05Rik; Ncrna00117; Prdxdd1"
                     /note="major polyA site"
ORIGIN      
        1 acttccggta agcctgccca cgtagagggg aaaatggcag gctcggagct gcgggctgag
       61 ttagaacaga ggctcggcgc cctcgccatt cgcacggagg tcgtggagca tcccgaggtg
      121 tttacaattg aagaaatgat gcctcatatt caacatctga aaggagcaca tagtaagaac
      181 ttatttctta aagacaaaaa gaagaaaaac tattggttag tcacagttct tcatgataga
      241 caaatcaatt taaatgatct tggcaagcag ttaggagttg ggagtggaaa tcttcggttt
      301 gctgatgaaa cagccatgct agaaaaactg aaagttggtc aaggctgtgc cacacctttg
      361 tcactcttct gcgatgatgg agatgttaaa tttgtcttgg attcagcttt tctggaaggt
      421 ggacatgaga aagtgtactt tcacccaatg actaatgctg caacaatggg gttaagtcct
      481 gaagactttc tcatatttgt gaaggctaca ggacatgatc ccataattct aaactttgat
      541 taaaaaatga ttgggagggc tggagagatg gctcagcggt taagagcact gactgcactt
      601 gcagagatcc tgagttcaat tcccagcaac cacatggtgg ctcacaacca tctgtaacgg
      661 atctgatgcc ctcttctggt gtgtctgaag atagctacag tatactccta tacaataaat
      721 aaataaataa ataaatctta aaaaaaaaaa aagattggga gccaggtgtg gtggcatatg
      781 ctatttgcct agcactttag gcagagcagg ctgatctctg agttctaggc cagctaacat
      841 ctaatagtca gctgctatgt caaacaaaag tcaatttggt taatattcat aataaactca
      901 ttctgacagc tgtttttatt tcttgtgtct ttaatttgga gactattatt taccttaaag
      961 atatttatgt gtatgagcat tttgtctgca tgtaatggta cagtcaggta ccattacaac
     1021 tggcttatta aattcaatgt agaaaaacta gaagtagaaa attgtttcca ctaaagtatt
     1081 aaatttatat cttaaaactc ggctgcaaaa tatagcatca gaactggttc agatgacaga
     1141 gaggcagttc cctttgtcct ctaccctaac ttactatcct attttatgat aaatttattc
     1201 atctttgtta tggtgagtcc tggttgggaa cttgatttga tccagaacaa aatactcccc
     1261 tgagcagatc tgtgaggaca tttctaggca ggactaaatg aggaagactc cacagtgggc
     1321 agaattttga cagcagcttg gatgaagttc caggaaagag ctgtgttgct tttgtgcctt
     1381 cattgcttct tgctggtgag tcctactgct gctactacca tcctttattg acacatgccc
     1441 acacagcctg aagaccagag gctcttcaag aatcctccag gcacactgaa cctactaggt
     1501 tctcagaatc tccaacatgt aaaagagaca ttgttccaaa taccctaggt tatattcctt
     1561 tagaaaatgt taatataatt tcctttcaat tatggcagct gaagtattaa atctaggaac
     1621 aatttagtca actctttatt cattgaggat ctgacatagg ctagaatata gaaattgctc
     1681 ttgccattat ctccattcca gttaactagg atatttctaa aagaactgta ttttcctgtt
     1741 caagctttga gaaatacttt tcatctagta gagaaactaa tttgtaccaa cttgtgttac
     1801 tgaaaggcaa aatgaaacta atgattgcct ttgccccaga ggttccatgc ttgttttacc
     1861 tgctctgcac tcaatctcta acataaacaa gtagttctaa gttcttatga acataaaacg
     1921 aaggacctga atcagaattt gtagaccttg gatatcatgt tgatagtgaa aacaggctcc
     1981 agaagaatga tatggtaaga tgcctcgagt tactaagtaa aaataaaaga ctgaatg
//
