LOCUS       NM_001368876            1391 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus protein interacting with cyclin A1 (Proca1),
            transcript variant 1, mRNA.
ACCESSION   NM_001368876 XM_006532963
VERSION     NM_001368876.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1391)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL591070.19.
            
            On Mar 6, 2019 this sequence version replaced XM_006532963.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4788964.1,
                                           SRR5189685.297541.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-253               AL591070.19        155036-155288       c
            254-334             AL591070.19        148098-148178       c
            335-467             AL591070.19        145793-145925       c
            468-1391            AL591070.19        144227-145150       c
FEATURES             Location/Qualifiers
     source          1..1391
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 46.74 cM"
     gene            1..1391
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /note="protein interacting with cyclin A1"
                     /db_xref="GeneID:216974"
                     /db_xref="MGI:MGI:1918274"
     exon            1..253
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1095
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein PROCA1"
                     /codon_start=1
                     /product="protein PROCA1 isoform 1"
                     /protein_id="NP_001355805.1"
                     /db_xref="CCDS:CCDS88201.1"
                     /db_xref="GeneID:216974"
                     /db_xref="MGI:MGI:1918274"
                     /translation="MWVRTTITVKRWTEERSGRKIERTERTDITRLPSWKRGYPASVD
                     SSSDLFSFSEGENKETDRRCWKHQHCPGHTIHPFSDCGHHNRCMHAVSQCDCESRCRS
                     HRPVSVAIIYHPTHHMYMTDDDLEENWVSRKNHLSPSARPPDPNTGSATEVPDLSVPI
                     TIWRSESPIEKCQESNVIKDIKRKEKEQDEEEMVDEKANLKKKAKGKLTKKKTPVKSE
                     SSPADLSQSVRGPVRTPESSPESPGGLESEYSCERGKERPSSEDVVESLSPRKKEKTS
                     SGQAKKNGTKKETQKTSKRKKSSPVPNPNLS"
     exon            254..334
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            335..467
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            468..1391
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1112..1117
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1133
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /note="major polyA site"
     regulatory      1370..1375
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1391
                     /gene="Proca1"
                     /gene_synonym="4933404M19Rik"
ORIGIN      
        1 agacccgggc tggaagacct gaggggggga ggcgggcggg gggttgggca agcatgaggc
       61 ggagctaggg gctggactgg agcttacagc tgggccgagg gctcgaccaa gctgaggttc
      121 aacgttgaac tctgcgaggt agggtcctgt ggaagaactg ggctgacagc gatgtgggtc
      181 aggacgacaa taacggttaa aagatggact gaggaaaggt ctggccgcaa aattgagaga
      241 accgagagaa ctgatatcac gaggttgccc agctggaaga gaggataccc ggctagtgtg
      301 gactccagca gtgatctatt ttccttttct gaaggtgaga acaaggagac agacagacgt
      361 tgctggaaac accagcactg tcccgggcat accatccacc ccttctcgga ctgtggccat
      421 cacaacagat gtatgcatgc tgtcagccaa tgcgactgtg aatctaggtg tagaagccac
      481 aggcctgtct ctgtggcaat aatttaccat cccacccacc atatgtatat gacagatgac
      541 gatctggaag agaactgggt ttccaggaaa aatcatttaa gtcccagtgc cagacctcct
      601 gacccaaaca cagggtcagc cactgaggtt cctgacttat cagtgcccat cactatctgg
      661 cgttctgaaa gtcccataga aaagtgtcag gaaagcaacg tcatcaagga tataaagaga
      721 aaggagaaag agcaagatga ggaggagatg gtggatgaaa aggcaaactt gaagaaaaaa
      781 gccaagggca agttaactaa gaagaaaacc ccagtgaagt cggagtcttc ccctgctgat
      841 ctgagccaat ccgtaagagg acccgtgagg acaccagagt ctagcccaga aagcccggga
      901 gggctggaga gcgagtacag ttgtgaacgg ggtaaagaaa ggccctctag tgaagatgtt
      961 gtagagtcat tgtcccccag aaagaaagag aagacatcat ctggccaggc caaaaagaat
     1021 gggacaaaga aagaaaccca gaaaacgagc aagagaaaaa aatcttcccc agtgcccaac
     1081 cccaatctca gctgaggcaa acagagtgaa taataaatca agcctgtaac tgaccctacc
     1141 gctattctct gccttcaaca gggcctctta tgggaggggc tccagggatc ctttaagggt
     1201 aaccctgctt tcaaggagga agtctatgtc tatggaaagt taagtaggag ggagagagaa
     1261 caactctcag gactaggtgg gagaatctat ttgggaagtg ggtagggggt gggagaacag
     1321 tgttgtcaca tgcattctgt ggtggccagc actacgaaat gctaccttca ataaactgaa
     1381 cctgccactc a
//
