LOCUS       XM_036154547            3636 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus proteoglycan 4 (megakaryocyte stimulating
            factor, articular superficial zone protein) (Prg4), transcript
            variant X7, mRNA.
ACCESSION   XM_036154547
VERSION     XM_036154547.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..3636
                     /gene="Prg4"
                     /gene_synonym="CACP; DOL54; JCAP; lubricin; MSF; SZP"
                     /note="proteoglycan 4 (megakaryocyte stimulating factor,
                     articular superficial zone protein); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 7 ESTs, 13 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:96875"
                     /db_xref="MGI:MGI:1891344"
     CDS             43..3468
                     /gene="Prg4"
                     /gene_synonym="CACP; DOL54; JCAP; lubricin; MSF; SZP"
                     /codon_start=1
                     /product="proteoglycan 4 isoform X7"
                     /protein_id="XP_036010440.1"
                     /db_xref="GeneID:96875"
                     /db_xref="MGI:MGI:1891344"
                     /translation="MGWKILPVCLSLLLPVVLIQQVSSQDLSSCAGRCGEGYSRDATC
                     NCDYNCQHYMECCPDFKRVCTTELSCKGRCFESFARGRECDCDSQCKQYGKCCADYDS
                     FCEEVHNPTSPSPKTAPPPPGASHTIKSTTKRSPKSPKKKTKKVVESEEITEEHSVSE
                     NQESSSSSSSSSSTIRKIKSSKNSANRELQKNPKVKDNKKNTPKKKPNPEPPAVDEAG
                     SGLDNGEFKLTPPPPDPPTTPHSKVTTSPKTTAAKPVTPKPSLAPNSETSKEASLASN
                     KETTVETKETTATNKQSSASKKKTTSAKETRSAEKTSDKDVEPTSTTPKNSAPTTTKK
                     PVTTTKEPVPTTPKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTPKEPEPT
                     TPKEPEPTTPKEPPPTTKKPEPTTPKEPEPTTPKEPEPTTTKEPEPTTTKEPESTTRK
                     EPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEP
                     EPTTPKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTLKEPEPTTPKEPEPTTTKEPES
                     TTRKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTT
                     PKEPEPTTPKKPEPTTPKEPEPTTPKEPEPTTPKEPEPTTPKEPEPTTRKEPEPTTPK
                     EPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPKVTAPAEEIQNKPEETTPASE
                     DSDDSKTTLKPQKPTKAPKPTKKPTKAPKKPTSTKKPKTPKTRKPKTTPSPLKTTSAT
                     PELNTTPLEVMLPTTTIPKQTPNPETAEVNPDHEDADGGEGEKPLIPGPPVLFPTAIP
                     GTDLLAGRLNQGININPMLSDETNLCNGKPVDGLTTLRNGTLVAFRGHYFWMLNPFRP
                     PSPPRRITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDVVDPGYPKQIVKGF
                     GGLTGKIVAALSIAKYKDRPESVYFFKRGGNIQQYTYKQEPMKKCTGRRPAINYSVYG
                     EAAQVRRRRFERAVGPFQTHTFRIHYSVPMRVSYQDKGFLHNEVKVSTMWRGFPNVVT
                     SAITLPNIRKPDGYDYYAFSKDQYYNIDVPTRTARAITTRSGQTLSKIWYNCP"
ORIGIN      
        1 gtttttattt tatctcaagc aagggcgttg catccgagaa ccatggggtg gaaaatactt
       61 cccgtctgct tgtcgctgct gcttcctgtt gtcttgattc aacaggtttc atctcaagat
      121 ttatcaagct gtgcagggag atgtggggaa gggtactcta gagatgccac ctgcaactgt
      181 gattataact gtcaacacta catggagtgc tgtcctgatt tcaagagagt ctgcactaca
      241 gagctctcct gcaaaggacg ctgcttcgag tccttcgctc gagggaggga gtgtgactgt
      301 gactcccagt gtaaacagta tggcaagtgc tgtgcagatt atgacagctt ctgtgaagaa
      361 gtgcataatc ccacatcacc atctccaaag actgcacctc cgcctccagg agcatctcac
      421 accatcaaat caactaccaa acgctcaccc aaatcaccaa aaaagaagac taagaaagtt
      481 gtagaatctg aggaaataac agaagaacat tctgtttctg aaaatcaaga gtcctcctcc
      541 tcctcctctt cttcctcttc aactattcgg aaaatcaagt cttccaaaaa ttcagctaat
      601 agagaattac agaagaaccc aaaagtaaaa gataacaaga aaaacactcc taaaaagaaa
      661 cccaatccag aaccgccggc tgtggatgaa gctggaagcg ggctggataa tggtgagttc
      721 aagctcaccc cacctcctcc tgaccctcct actactccac acagcaaagt caccacatct
      781 cccaagacta cagcagcaaa accagtaact cctaaaccca gtcttgcacc taattctgag
      841 acatccaaag aggcatcttt agcatccaat aaagagacaa cagttgaaac gaaagagact
      901 actgcaacaa ataaacaatc ttctgccagt aaaaaaaaga cgacttcagc taaagagaca
      961 cggagtgcag agaaaacatc tgataaagat gttgagccca catctacaac tcccaagaac
     1021 tcagctccca ctactaccaa gaagcctgtt actacaacca aggaaccagt tcctaccact
     1081 cccaaggagc ctgaacccac aactcccaag gaaccacctc caaccaccaa gaagcctgaa
     1141 cccaccaccc ccaaggagcc tgaacccaca actcccaagg agcctgaacc caccaccccc
     1201 aaggagcctg aacccaccac tcccaaggag cctgaaccca caactcccaa ggaaccacct
     1261 ccaaccacca agaagcctga acccaccacc cccaaggagc ctgaacccac aactcccaag
     1321 gagcctgaac ccaccaccac caaggagcct gaacccacca ccaccaagga gcctgaatcc
     1381 accacccgca aggagcctga acccaccact cccaaggagc ctgaacccac aactcccaag
     1441 gagcctgaac ctacaacccc caaggagcct gaacccacaa ctcccaagga gcctgaaccc
     1501 accactctca aggagcctga acccaccacg cccaaggagc ctgaacccac cactctcaag
     1561 gagcctgaac ctacaacccc caaggagcct gaacccacca ctcccaagga gcctgaaccc
     1621 accactctca aggagcctga acccaccacg cccaaggagc ctgaacccac cactctcaag
     1681 gagcctgaac ctacaacccc caaggagcct gaacccacca ccaccaagga gcctgaatcc
     1741 accacccgca aggagcctga acccaccact cccaaggagc ctgaacccac aactcccaag
     1801 gagcctgaac ccacaactcc caaggagcct gaacccacca cgcccaagga gcctgaaccc
     1861 acaactccca aggagcctga acccaccacg cccaaggagc ctgaacccac aacccccaag
     1921 gagcctgaac ccacaactcc caagaaacct gaacccacaa ctcccaagga gcctgaacct
     1981 acaaccccca aggagcctga acccaccacc cccaaggagc ctgaacccac cacgcccaag
     2041 gagcctgaac ccacaactcg caaggagcct gaacctacaa ctcccaagga gcctgaacct
     2101 acaaccccca aggagcctga acccacaact cccaagaagc ctgaacccac caccacatca
     2161 cccaaaacca ctactctgaa agcaacaact cttgcaccca aagtaactgc tccagcagaa
     2221 gagattcaga acaaacctga agaaacaact cctgcatcag aagattctga tgattctaaa
     2281 acaactctaa aaccacagaa gccaaccaaa gcacccaagc ctaccaaaaa gccaaccaaa
     2341 gcacccaaga agcccacctc taccaaaaag ccaaagacac caaaaacaag aaaaccaaaa
     2401 actacaccat ctcctctaaa gacgacttca gcaacacctg aactgaatac cacccctcta
     2461 gaagtcatgc tgccaaccac caccatccct aaacaaactc caaaccctga aacagctgaa
     2521 gtaaatccag atcatgaaga tgcagatgga ggtgaaggag aaaaacctct gattcccggg
     2581 ccccctgtgc tattccccac agctattcca ggcactgatc ttttggccgg gagactcaat
     2641 caaggcatta acatcaatcc catgctttca gatgagacca atttatgcaa tggtaagcca
     2701 gtggatggac tgactacgct gcgcaatggg acattagttg catttcgagg tcattatttc
     2761 tggatgctga atccattcag accaccatct ccaccacgca gaattaccga agtttggggt
     2821 attccctctc ctattgacac agtttttact agatgtaact gtgaaggaaa aactttcttc
     2881 tttaaggatt ctcagtactg gcgcttcacc aatgatgtgg tagatcctgg gtatcctaaa
     2941 caaattgtca aaggctttgg aggactaaca gggaagatag tggctgctct ttcaatagcc
     3001 aagtacaagg acaggcctga atctgtgtac ttcttcaaga gaggtggcaa cattcagcag
     3061 tacacttata aacaggagcc aatgaagaag tgcacaggga ggcggcctgc catcaactac
     3121 tcggtgtacg gggaggcagc acaggtcagg aggcgccgct ttgagcgtgc tgttggacct
     3181 ttccagacac acaccttcag gatccattac tcggtgccca tgagagtttc ttatcaagac
     3241 aaaggtttcc tccacaatga agtcaaagtg agtacaatgt ggagagggtt tccaaatgtt
     3301 gttacttcag cgataacact gcctaacatt aggaaacctg atggctatga ttactacgcc
     3361 ttttccaaag atcaatacta taacattgat gtgcctacaa gaacagcaag agcaattacc
     3421 acacgttcag ggcagaccct ctccaaaatc tggtacaact gtccttgaac tgattgacaa
     3481 agaagagtca tcaaaatgaa atgaagaaaa cagtgatact ttttgacatt gaaatacatt
     3541 ttattaataa agaatgttga aatgagcata cctatttaaa tacaaaacag ttctcaactt
     3601 gacaatcatt atattaaaac agattcgtca atctta
//
