LOCUS       NM_144867               2167 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus PRELI domain containing 3A (Prelid3a), mRNA.
ACCESSION   NM_144867
VERSION     NM_144867.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY741062.1, AK143220.1 and AC154125.7.
            
            [WARNING] On Sep 3, 2024 this sequence was replaced by NM_144867.3.
            
            On Feb 11, 2006 this sequence version replaced NM_144867.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK143220.1, BY741062.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                BY741062.1         2-18
            18-1353             AK143220.1         2-1337
            1354-2167           AC154125.7         1423-2236           c
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 39.99 cM"
     gene            1..2167
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /note="PRELI domain containing 3A"
                     /db_xref="GeneID:225655"
                     /db_xref="MGI:MGI:2442865"
     exon            1..108
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..595
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /note="protein slowmo homolog 1"
                     /codon_start=1
                     /product="PRELI domain containing protein 3A"
                     /protein_id="NP_659116.1"
                     /db_xref="CCDS:CCDS37848.1"
                     /db_xref="GeneID:225655"
                     /db_xref="MGI:MGI:2442865"
                     /translation="MKIWSSEHVFGHPWDTVIKAAMRKYPNPMNPCVVGVDVLERSVD
                     GCGRLHSLRLLSTEWGLPGLVRAILGANRTLTYIKERSVVDPAARKMELCSTNITLTN
                     LVSVNERLVYTPHPENPEKTVLTQEAIITVKGISLGSYLESLMATTISSNAKKGWAAI
                     EWIIEHSESAIS"
     exon            109..277
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     exon            278..367
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     exon            368..438
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     exon            439..541
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     exon            542..653
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     exon            654..2167
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2145..2150
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /note="hexamer: ATTAAA"
     polyA_site      2167
                     /gene="Prelid3a"
                     /gene_synonym="A230074A19Rik; Slmo1"
                     /note="major polyA site"
ORIGIN      
        1 gggcgccccg cccccacggc gccgcgcagc atcccgcaga gcgcggagcc cgcgccctgg
       61 gcctgcggct gcggcgatga agatctggag ctcggagcac gtgttcggcc atccctggga
      121 cacggtgatc aaggcggcca tgcggaagta ccctaacccg atgaacccct gcgtcgtggg
      181 cgtggatgtg ctggagcgca gcgtggatgg ctgtgggcgc ctgcacagtc tgcgcctgct
      241 cagtaccgaa tgggggctgc ctggcctcgt gcgagcgatt ttgggagcca acaggacctt
      301 gacgtacatc aaagagcgct ccgtcgtgga tccggctgcc aggaaaatgg agctgtgctc
      361 caccaatatc acgctcacga atctggtgtc agtgaatgag aggttggtgt acacacctca
      421 tccagagaac cctgaaaaga ctgtgctcac tcaagaagcc atcatcactg tgaagggaat
      481 tagcttgggg agctacctgg aaagtctgat ggccaccacg atatcctcca atgctaagaa
      541 ggggtgggct gccattgagt ggataattga acattccgag agcgccataa gctaacaggt
      601 ctgccaccca tgcctggtga cacaaggggc agtcacagta acttcttaac ccgtcagatg
      661 tctcaccaaa aagagtcaaa gaagaaagga aaggaagtgt ggacgaataa agaagacgag
      721 aggcaagtgt ggctggggct cccgccaagt ctggaagagg tgtctgctgg aatctttcct
      781 cccagtgcag catcaggccc aggcgccagc tctgtgaggc tgtttgtgtg aggccgtttc
      841 ttgggagtgg tgtggagccc tggtctgctg ggctctgctg taggtgctgt gggcactgtg
      901 ctgggcagta ctgggctgca ctgcccctgt gttggtttta agcttttatt tgcttctgga
      961 aggagtgtta cttctgtgtg ctggctctag tcactccacc aaaagagagc tcccctttcc
     1021 tcatgccctg ccagctaagc tggggtaggt cccccaaacc tttcccgggg ggcctggctg
     1081 ctgtcctctg ttcctggtag tcccatgtcc ttatagtgtc ccacttgcct ctgaaggaga
     1141 atagaagttg ctctctggcc ctcagggtcc ccatcatgcc ctgcatccag agacagtttg
     1201 ggagctctct gcacaggcca ctatggattc cagcagcaac tgggatgtcc atactcaaga
     1261 ccggccttga actctgtgtg tgactgaaga tgcccttgaa ctcttccttc tgcttcccca
     1321 ttcccaagtc ctgagaatac agacttggac tgctatactt gactcttttt ggttgttatt
     1381 cttgagacag attttgctat gtagccttgg ctgttctgaa actcatggca actctcctgc
     1441 ctcagcatct caagcgttgg aatcacaggt gtggaccacc atacccgtta tgggatgctt
     1501 gtcaagtccc aactgtcctt tcaacaggat ctcttgacaa gcctgggtgt cccttgaaga
     1561 cggtgggaac ctcttgctat ctacaaagag ctgtccagcg aattccctct ctccatatcc
     1621 tggggttttg aggtctggct ggggtgtgag tggtggtttt gtgctcttga actagattga
     1681 accccttccc cacacgtaca ctgccttcct gcctcagagt ttctgctcct cattttcttt
     1741 gtagtcttta gtctgtcggt gtttcagtca gggacatgag catgcggtgc tgccatcttt
     1801 tgtttagaga caaagtctcg tgtaactcag gttgaccttc aactcactgt acatgaggct
     1861 gtcctccatc ttcttccacc tcttacgaat tacaagtgag cactgtcatg cctggctttc
     1921 taccatcttt aaatcaaggt tgtttaacac acacacacac acacacacac acacacacac
     1981 acacacacac acacacacac acacacacac acgggattca tgtttgtact tttaaaaagg
     2041 aattaaatct gttgaatagt agagacctct gctcttcctc tgttggtcca ctcactattt
     2101 ctagaacttt cctatgccta tgaaagttga tgtcttttgc tttcattaaa cccggttcac
     2161 actgtaa
//
