LOCUS       XM_036160455            5095 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PR domain containing 9 (Prdm9), transcript
            variant X8, mRNA.
ACCESSION   XM_036160455
VERSION     XM_036160455.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5095
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..5095
                     /gene="Prdm9"
                     /gene_synonym="Dsbc1; G1-419-29; Meisetz; PRDM9-B; Rcr1;
                     repro7"
                     /note="PR domain containing 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 63 long SRA reads, 11 Proteins, and 97% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:213389"
                     /db_xref="MGI:MGI:2384854"
     CDS             2020..4194
                     /gene="Prdm9"
                     /gene_synonym="Dsbc1; G1-419-29; Meisetz; PRDM9-B; Rcr1;
                     repro7"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM9 isoform
                     X7"
                     /protein_id="XP_036016348.1"
                     /db_xref="GeneID:213389"
                     /db_xref="MGI:MGI:2384854"
                     /translation="MPFSGESNVKEGSGIENLLNTSGSEHVQKPVSSLEEGNTSGQHS
                     GKKLSKKLRKKNVEVKMYRLRERKGLAYEEVSEPQDDDYLYCEKCQNFFIDSCPNHGP
                     PLFVKDSMVDRGHPNHSVLSLPPGLRISPSGIPEAGLGVWNEASDLPVGLHFGPYEGQ
                     ITEDEEAANSGYSWLITKGRNCYEYVDGQDESQANWMRYVNCARDDEEQNLVAFQYHR
                     KIFYRTCRVIRPGCELLVWYGDEYGQELGIKWGSKMKKGFTAGRELRTEIHPCLLCSL
                     AFSSQKFLTQHMEWNHRTEIFPGTSARINPKPGDPCSDQLQEQHVDSQNKNDKASNEV
                     KRKSKPRQRISTTFPSTLKEQMRSEESKRTVEELRTGQTTNTEDTVKSFIASEISSIE
                     RQCGQYFSDKSNVNEHQKTHTGEKPYVCRECGRGFTQNSHLIQHQRTHTGEKPYVCRE
                     CGRGFTQKSDLIKHQRTHTGEKPYVCRECGRGFTQKSDLIKHQRTHTGEKPYVCRECG
                     RGFTQKSVLIKHQRTHTGEKPYVCRECGRGFTQKSVLIKHQRTHTGEKPYVCRECGRG
                     FTAKSVLIQHQRTHTGEKPYVCRECGRGFTAKSNLIQHQRTHTGEKPYVCRECGRGFT
                     AKSVLIQHQRTHTGEKPYVCRECGRGFTAKSVLIQHQRTHTGEKPYVCRECGRGFTQK
                     SNLIKHQRTHTGEKPYVCRECGWGFTQKSDLIQHQRTHTREK"
ORIGIN      
        1 attggcggat tctcctgtca gtcagcctcg gaactcctca gagggacgaa cgccggcggt
       61 ggcctcagag ccgcgggatt ctggaccatg agtgcaggcg aaaccttcag gaccagcgag
      121 gctttctagg ctcagcccga ccataggacc ctggacctct ccagtgaaat gtcctgcacc
      181 atgaacacca acaagctgga agaaaatagt cctgaagaag atacagggaa attcgagtgg
      241 aaacccaagg tcaaagatga attcaaagac atttccatat acttctccaa agaagaatgg
      301 gcagagatgg gagagtggga gaaaattcgc tatagaaatg tgaaaaggaa ctataaaatg
      361 ctgatttcaa taggtctcag agcccctaga ccagctttca tgtgttacca aaggcaagca
      421 atgaaacccc aaataaatga cagtgaggat tctgatgaag agtggacacc taagcaacaa
      481 gtcagtcctc cttgggtgcc tttccgggtg aagcacagta aacagcagaa ggtaagtgct
      541 ttccaaatcc tacagacaag gaaaccttcc tcatagatcc aaacacaggt aaggaaagga
      601 gaaggcttag agtaccctgg gaattgctac cttcccggtc tcatctacac agtgtctctc
      661 agcctcccgg tcatttgaat taataagaac atcactcact tgagtgttcc tacctcagtt
      721 tttttctgct atgtgaaagt gagaaattca ctaatgtact ctaaggatag tttacaaata
      781 cagaggattt tactttgaat ggcacacata aaggagatat gatcctctcc ttcataaaga
      841 ctcactctga taagaaacag caactctcgt cacttagaag attcaagttt aatagcaagg
      901 gatccacaaa tgagacatga cttaatcagg catggtagtg cttgcctgta attacatgag
      961 aagcagagtc ccaaggaata ctgtgagttt gaggccagcc tagtctactt aaggagttcc
     1021 aggtctacca caggtataca atgatataat gagttttgga atgggaaaaa gaaaaggatg
     1081 taagcgttca tataggcaaa taatttccat agaaatatca tctgtcggaa agactgagag
     1141 aagctagtaa tctcacacta gtattatatt cagttgtggg tattctaaat agaattatta
     1201 tgtctgggtg gttggagaga gggctcagtg gttaatagca tttcttgttc ttccaaaggt
     1261 cctgagctgt acagttcaaa actacccttt aactccaact ccaagagatt gaatgccctt
     1321 gtcttactct gacagaacct gtgcaccacc ccctcacaca cacaaataga aatgaaaata
     1381 aatcttttaa aaatgaacaa ttagcatgta tacaaactta tgagtgaaaa aattattgaa
     1441 tttttctgga aaattagtac aagaattaat ctaattccag agtcatccta agcattatgc
     1501 tcagatctgt agtttgagca cttgaaaggc tgaggtagga ggaatcctgt gagtttgagg
     1561 ccagcctcta tcatgagacc cccatctcaa acaagcaacc taattctaga atcaactatt
     1621 tccagaatgc caatttacaa ttttatcatt acttcgttag ttgtagaggt acatttctgc
     1681 cgccatctct tcattttctt cccagagaca ctgctctgct ctcacttccc tttacagatg
     1741 tgttttatca actttgtttt ctacatttct catctgatca atatttccta ctttacggat
     1801 ataccctctt tctctctgta agccctatct tcttcattgc aaactttgtt gaccttccag
     1861 ctagccttcc caagtatcta ccttcctcaa gcctgaaaga agcctgaagg gagaaagcct
     1921 agcagatggc ctcttgccct ggattcattt aagttcttcc ttgtctcttc cttattcaga
     1981 tactctacac attaactaaa gtcacaggaa tcatctagaa tgccatttag tggtgaatct
     2041 aatgtgaagg aagggtctgg aatagaaaat ttgctgaata caagtggctc agaacacgtc
     2101 cagaaaccag tgtcctccct tgaagaagga aatacctctg gacagcactc tgggaaaaaa
     2161 ctgagtaaga aacttaggaa aaagaacgtt gaagtgaaaa tgtacaggct gcgagagaga
     2221 aagggccttg cctatgagga ggtcagcgag cctcaggatg atgactatct ctattgtgag
     2281 aagtgccaga atttcttcat cgacagttgt cccaaccatg ggcctccttt atttgtaaaa
     2341 gacagtatgg tggacagggg gcatcccaac cactcagtcc tcagtctgcc ccctgggcta
     2401 agaattagtc catcgggcat ccctgaagct ggacttggag tatggaatga agcatctgat
     2461 ctaccagtcg gtctgcactt tggcccctat gagggtcaga tcacagagga tgaagaggca
     2521 gccaacagtg gttactcctg gctgattacc aagggaagaa actgctatga gtatgtggat
     2581 ggacaggacg agtcccaagc caactggatg aggtatgtga actgtgcccg ggatgatgaa
     2641 gagcagaacc tggtagcctt tcaatatcac aggaaaatct tctatcgaac ctgccgggtt
     2701 atcagaccag gttgtgagct tctggtctgg tatggggatg agtacggcca ggaactgggc
     2761 attaagtggg gaagcaagat gaagaaagga ttcacagcag gaagagaact aaggacagaa
     2821 attcatcctt gtcttttgtg ctctttggcc ttctcaagtc agaaattcct cactcaacat
     2881 atggaatgga atcatcgcac tgaaatcttc ccaggaacat ctgcaagaat aaatcctaaa
     2941 ccaggagatc cctgttcaga tcagcttcag gaacaacatg ttgattcaca gaacaaaaat
     3001 gacaaggcca gcaatgaagt aaaaagaaaa tccaaaccca ggcagaggat ttcaacaacc
     3061 tttcccagca cactcaaaga acaaatgaga tctgaggaaa gtaagagaac tgtggaagag
     3121 ctcagaacag gccagacaac aaatacagag gacacagtca aatcatttat tgcatcagaa
     3181 atctcaagta ttgaaagaca atgtgggcaa tatttcagtg ataagtcaaa tgtcaatgag
     3241 caccagaaga cacacacagg ggagaagccc tatgtttgca gggagtgtgg gcggggcttt
     3301 acacagaact cacacctcat ccagcaccag aggacacaca caggggagaa gccctatgtt
     3361 tgcagggagt gtgggcgggg ctttacacag aagtcagacc tcatcaagca ccagaggaca
     3421 cacacagggg agaagcccta tgtttgcagg gagtgtgggc ggggctttac acagaagtca
     3481 gacctcatca agcaccagag gacacacaca ggggagaagc cctatgtttg cagggagtgt
     3541 gggcggggct ttacacagaa gtcagtcctc atcaagcacc agaggacaca cacaggggag
     3601 aagccctatg tttgcaggga gtgtgggcgg ggctttacac agaagtcagt cctcatcaag
     3661 caccagagga cacacacagg ggagaagccc tatgtttgca gggagtgtgg gcggggcttt
     3721 acagcgaagt cagtcctcat ccagcaccag aggacacaca caggggagaa gccctatgtt
     3781 tgcagggagt gtgggcgggg ctttacagcg aagtcaaacc tcatccagca ccagaggaca
     3841 cacacagggg agaagcccta tgtttgcagg gagtgtgggc ggggctttac agcgaagtca
     3901 gtcctcatcc agcaccagag gacacacaca ggggagaagc cctatgtttg cagggagtgt
     3961 gggcggggct ttacagcgaa gtcagtcctc atccagcacc agaggacaca cacaggggag
     4021 aagccctatg tttgcaggga gtgtgggcgg ggctttacac agaagtcaaa cctcatcaag
     4081 caccagagga cacacacagg ggagaagccc tatgtttgca gggagtgtgg gtggggcttt
     4141 acacagaagt cagacctcat ccagcaccag aggacacata caagagagaa gtaatatatt
     4201 ttcgaaaaga atgagaaagc caacagcaat aaaaccacat ctcaacaatt acaggaagac
     4261 aaatgtagtc actaaacatc tgttctgcta aaacttctaa ggagtctact gatttttaaa
     4321 actagaatat aaaatgacta gaaaagggaa ttaaatcccc ttctttttct tttctttttc
     4381 ggtttttaaa gacagatttc tctgtgcagt ctggttgtcc tagaactgtt tctgtagacc
     4441 aggttggcct caaaatcaga gttgctagct tctgcctccc caatactagg agtaaagccc
     4501 cattgcaaat tctcattttc tttcttttct ttcttttctt tctttttttt tttttttttt
     4561 tttggttttt cgagacaggg tttctctgta tagccctggc tgtcctggaa ctcacgctat
     4621 agaccaggct ggcctcgaac tctgaaatct gcctgcctct gcctcccgag tgctgggatt
     4681 aaaggcacct ggctacaaat tctcattttc aagtgagata agttagaaag aaaaacaaac
     4741 gaacaacccc tcctcaaaaa caaaacaaac aaaaacaaac tgttaggagc gaccctgttt
     4801 gaatgttagc tgccttgtca gccataagtg cttacttaca aagtcttggc cttagtggaa
     4861 aagtattagc ttagttgaga tttctgtggg aaaaagttga ggcctctgtg ggaaagtact
     4921 acatagagtt ctgttcctcc tgctgaactt tttacctagc caatatcctg ctttggggaa
     4981 catgtacgtt cccccagaaa caaagcgatt ctgcgtcatc cccctaccca tactctgctt
     5041 ctgtgggcat aaaacctgcc tgggaataat aaaaatgtga cagcttgatc agtca
//
