LOCUS       XM_017317889            2735 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PR domain containing 6 (Prdm6), transcript
            variant X2, mRNA.
ACCESSION   XM_017317889
VERSION     XM_017317889.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_017317889.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..2735
                     /gene="Prdm6"
                     /gene_synonym="Gm92; PRISM"
                     /note="PR domain containing 6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 32 ESTs, 2 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:225518"
                     /db_xref="MGI:MGI:2684938"
     CDS             110..1900
                     /gene="Prdm6"
                     /gene_synonym="Gm92; PRISM"
                     /codon_start=1
                     /product="putative histone-lysine N-methyltransferase
                     PRDM6 isoform X2"
                     /protein_id="XP_017173378.1"
                     /db_xref="GeneID:225518"
                     /db_xref="MGI:MGI:2684938"
                     /translation="MLKPGDPGGSAFLKVDPAYLQHWQQLFPHGGGGGGPLKASGAAL
                     ALGAPQPLQPPPPPPPPPPERAEPPPDGLRPRPASLSSTPAPSSTSASSASSCAAAAA
                     AAALAGLSALPVAQMPVFAPLAAAAVAAEPLPPKDLCLGASAGPGPAKCGGGGGSVGD
                     GRGVPRFRCSAEELDYYLYGQQRMEIIPLNQHTSDPNNRCDMCADNRNGECPMHGPLH
                     SLRRLVGTSSAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIG
                     PFQGVLLSPEKVQTGVVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCG
                     EQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQCIAQDENLNVPSTV
                     MEAMCRQDALQPFNKSSKLSPSGQQRSVVFPQTPCSRNFSLLDKSGPMEAGFNQINVK
                     NQRVLASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCS
                     QSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERCERS
                     FTQATQLSRHQRMPNECKPITESPESIEVD"
ORIGIN      
        1 agctcacccg gggctcccgc tcaccgcccc gtgcaccgaa acggcctccc gcacacagga
       61 acgttagccc ccgccggttg ctctcagtcc ccagctcgag gcgtcggaca tgctgaagcc
      121 gggggatccc ggcggctcgg ccttcctcaa agtggaccca gcttacctgc agcactggca
      181 gcaactcttc ccgcacggag gcggcggcgg cggcccgctc aaagccagtg gcgccgcgct
      241 cgccctgggc gccccacagc ccctgcagcc accgccaccg ccgccgcctc ctcctcccga
      301 gcgcgccgag cctcctccag acggcctgcg gccgcggcct gcctcgctct cgtccacccc
      361 ggctccttcc tccacctctg cctcttctgc ctcttcctgc gccgcagccg cggccgccgc
      421 tgcgctggcg ggtctctcgg ccctgccggt ggcacagatg ccggtgttcg ctcctctagc
      481 tgctgctgct gtggccgcgg agccactgcc cccaaaggac ctgtgcctcg gcgcctccgc
      541 cggccccggg ccggccaagt gcggcggcgg cggtggcagc gtgggggacg gccgtggcgt
      601 cccacgtttc cgctgcagcg cggaggagct ggactattac ctgtacgggc agcagcgcat
      661 ggaaatcatc ccgctcaacc agcacaccag cgaccccaac aaccgttgcg atatgtgcgc
      721 ggacaaccgt aacggggagt gccccatgca cgggccactg cactcgctgc gccggctcgt
      781 gggcaccagc agcgcggccg ccgctgcacc cccgccggag ctgcccgagt ggcttcggga
      841 tctgccgcgg gaggtgtgcc tgtgtaccag cacggtgcca ggcctggcgt atggcatctg
      901 tgccgcgcag aggatccagc agggcacctg gattgggccc ttccagggcg tgcttctgtc
      961 cccggagaaa gtgcagaccg gcgtagtgag gaacacgcag catctctggg agatatatga
     1021 ccaagatggg acacttcagc actttattga tggtggggag cctagtaagt cgagctggat
     1081 gaggtatatc cgatgtgcaa ggcactgtgg agaacagaat ctaacagtag ttcagtacag
     1141 gtcgaatata ttctaccgag cctgtataga tatccccagg ggcaccgagc tcctggtgtg
     1201 gtacaatgac agctatacat ctttctttgg gatcccttta caatgcattg cccaggatga
     1261 aaacttgaac gtcccttcca ccgtaatgga agccatgtgc cgacaggatg ccctgcagcc
     1321 cttcaacaaa agcagcaagc tttctccctc gggccagcag cgctccgtgg ttttcccaca
     1381 gactccctgc agcaggaatt tctccctctt ggataaatct gggcccatgg aggcaggatt
     1441 taaccaaatc aacgtgaaga atcagagggt cctggcgagc ccaacctcaa ccagccagct
     1501 gcactcggag ttcagcgact ggcatctctg gaagtgcggc cagtgcttta agactttcac
     1561 gcagcgcatt ctcctgcaga tgcatgtgtg cacgcagaac cccgacagac cctaccagtg
     1621 tggccactgc tcacagtcct tttcccagcc gtcagaactg aggaaccacg tagtcactca
     1681 ctccagtgac cggcctttca agtgcggcta ctgtggccgt gcgtttgccg gagccaccac
     1741 cctcaacaac cacatccgga cccacactgg agaaaagccc ttcaagtgcg agaggtgcga
     1801 aaggagcttc acccaggcca cgcagctgag tcgacaccag cgcatgccca atgagtgcaa
     1861 gccgataacc gagagcccgg aatcaatcga agtggattaa ctgattgact ggccggaatt
     1921 aaacagcaag gaaagtcatg attaaatgtc acggacactt aagcaaaacc aaagatttcc
     1981 tctgaacaac tttcaatcag tcccagaaaa ccaaaagcag taataaaata agtaagatgt
     2041 taagagatat tgatcctggc gtggaagtca gaccaggcaa gagattattt atttatgact
     2101 agggatgaga cagatttccg tggacagctc acctgggatg gctcgtgttt ccagtcccaa
     2161 ccgtgtgttt gctttatttc taaaaaagct ttttaaaaac tgttatttaa taccaaaggg
     2221 agatttctct gccctcagct gtaagaacgc acagggactt gactctcgtc gcaccttttt
     2281 tttctagtag catgtttcaa ggggacccgt tctatggcct tcctcctgtg gaggcctggc
     2341 tcgcccgatg ttggttaccc cagcaaggaa ggcttgaggc ccaagcaaga acccggctga
     2401 agcagcaccg ccgctgcctg tagccttaga ggcagcccag ttccacagtt tcgctcctga
     2461 tgcactttga tggggctctt cccaccccgc agcctggaac tgaagctgga aaaggaagaa
     2521 aatggtttca gacgcaaacg caaaggacga acgaggagga cttgctttgt cctgtccgga
     2581 tctcacacac atttaaagtg tacggagctt cataatacaa tatatattgt tctgaagcag
     2641 ctagtcgaga aaaaaaaatg ttggtttcaa taacatttta gcttaaggaa aaaaaaaatg
     2701 aaaagagaaa taaagttctt tggtctgagg ctgaa
//
