LOCUS       XM_036164420            8952 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PR domain containing 16 (Prdm16),
            transcript variant X6, mRNA.
ACCESSION   XM_036164420
VERSION     XM_036164420.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8952
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..8952
                     /gene="Prdm16"
                     /gene_synonym="5730557K01Rik; csp1; mel1"
                     /note="PR domain containing 16; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 19 ESTs, 365 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 10 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:70673"
                     /db_xref="MGI:MGI:1917923"
     CDS             634..4164
                     /gene="Prdm16"
                     /gene_synonym="5730557K01Rik; csp1; mel1"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM16
                     isoform X6"
                     /protein_id="XP_036020313.1"
                     /db_xref="GeneID:70673"
                     /db_xref="MGI:MGI:1917923"
                     /translation="MRSKARARKLAKSDGDVVNNMYEPDPDLLAGQSAEEETEDGILS
                     PIPMGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKR
                     KMEIGERFGPYVVTPRAALKEADFGWEMLTDTEVSSQESCIKKISEDLGSEKFCVDAN
                     QAGSGSWLKYIRVACSCDDQNLAMCQINEQIYYKVIKDIEPGEELLVHVKEGAYSLGV
                     MAPSLDEDPTFRCDECDELFQCRLDLRRHKKYACSSAGAQLYEGLGEELKPEGLGVGS
                     DGQAHECKDCERMFPNKYSLEQHMIVHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSG
                     KRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHSTVK
                     PFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNH
                     YTPGSIFTPGLPLTPSPMMDKTKPSPTLNHGGLGFSEYFPSRPHPGSLPFSAAPPAFP
                     ALTPGFPGIFPPSLYPRPPLLPPTPLLKSPLNHAQDAKLPSPLGNPALPLVSAVSNSS
                     QGATAATGSEEKFDGRLEDAYAEKVKNRSPDMSDGSDFEDINTTTGTDLDTTTGTGSD
                     LDSDLDSDRDKGKDKGKPVESKPEFGGASVPPGAMNSVAEVPAFYSQHSFFPPPEEQL
                     LTASGAAGDSIKAIASIAEKYFGPGFMSMQEKKLGSLPYHSVFPFQFLPNFPHSLYPF
                     TDRALAHNLLVKAEPKSPRDALKVGGPSAECPFDLTTKPKEAKPALLAPKVPLIPSSG
                     EEQPLDLSIGSRARASQNGGGREPRKNHVYGERKPGVSEGLPKVCPAQLPQQPSLHYA
                     KPSPFFMDPIYSRVEKRKVADPVGVLKEKYLRPSPLLFHPQMSAIETMTEKLESFAAM
                     KADSGSSLQPLPHHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLRT
                     HTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKH
                     EHEGAPVSQHSGVLTNHLGTSASSPTSESDNHALLDEKEDSYFSEIRNFIANSEMNQA
                     STRMDKRPEIQDLDSNPPCPGSASAKPEDVEEEEEEELEEEDDDSLAGKSQEDTVSPT
                     PEPQGVYEDEEDEEPPSLTMGFDHTRRHMQ"
ORIGIN      
        1 gggaccgagg ggagttcggg aggagagcgc tctggggcga cggcgaacga aagcttttta
       61 attagtaata aaacgcaata aaacgcagca aaagcagcct ggacccgtgt cccaactatc
      121 agcgcgtttg cggggagatc caaggaagtc gcgcagaaac ccgctgcggg ccagtcttct
      181 ctacggcccg gcttgggcag gagccacagc gctgcgcagc gcagggccag ggcggggaga
      241 cggtcacctc gcctccaggg ctacctgggt ccttttaaag tgtccagggt gcgggccccg
      301 ggcgggagcg acgagcaagg aatgttttct taaagggcca gttccgagct gcgctgaaaa
      361 ggggggggga ggggggagag agagaagtga ggtgaagacc gagaaggcct cggagagccc
      421 cccaatcccg cgccgaggcg gcggcggcgg cggcgcgacg aagaggatga tgaacacatt
      481 gcaaagtttt tttggccccg gcgaggggtg tcagattgag tgctctgtgc gcatgtgcga
      541 aggtgtccaa actgacaatg ctagggagat gaagatagtg tgtagctgct tctgggctca
      601 aggaggagga gagagattcc gcgagccgac accatgcgat ccaaggcgag ggcgaggaag
      661 ctagccaaaa gtgacggtga cgttgtaaat aatatgtatg aacctgaccc ggacctgctg
      721 gccggccaga gtgccgagga ggagaccgaa gacggcatcc tgtcccccat ccccatgggg
      781 ccaccgtccc ccttccccac cagcgaggac ttcactccca aggagggctc gccctatgag
      841 gctcctgtct acattcctga agacattcca atcccaccag acttcgagct acgagagtcc
      901 tccataccag gagctggcct ggggatctgg gccaagcgga agatggaaat cggggagagg
      961 tttggcccct acgtggtgac gccccgggcc gcactgaagg aggccgactt tggatgggag
     1021 atgctgacgg atacagaggt gtcatcccag gagagctgca tcaaaaagat ctctgaagac
     1081 ttgggtagcg agaagttctg cgtggatgcc aatcaggcgg ggtctggcag ctggctcaag
     1141 tacatccgtg tagcgtgttc ctgtgatgac caaaacctcg ccatgtgtca gatcaacgaa
     1201 cagatttact ataaagtcat taaggacatc gagcctggag aggaactgtt ggtgcatgtg
     1261 aaagaaggtg cctactcctt gggtgtcatg gcccccagct tggatgagga ccccacattc
     1321 cgctgtgatg agtgtgatga gctcttccag tgcaggctgg acctgaggcg ccacaagaag
     1381 tacgcgtgca gctctgcagg agcccagctc tacgagggcc taggggagga actcaagccc
     1441 gagggccttg gcgtgggcag cgacgggcaa gcgcatgagt gcaaggattg cgagcggatg
     1501 ttccccaaca agtacagctt ggagcaacac atgatcgtcc acacggaaga gcgtgagtac
     1561 aaatgtgacc agtgtcccaa ggccttcaac tggaagtcca acctcatccg ccaccagatg
     1621 tctcacgaca gtggcaagcg cttcgaatgt gaaaactgtg tcaaggtgtt cacggacccc
     1681 agcaacctcc agcgtcacat ccgctcacag catgtcggtg cccgggccca tgcctgccct
     1741 gactgtggca agaccttcgc cacatcctct ggcctcaaac agcacaagca tatccacagc
     1801 acggtgaagc cattcatatg cgaggtctgc cacaagtcct acacgcagtt ctccaacctg
     1861 tgccggcaca agcggatgca cgccgactgc aggacgcaga tcaagtgcaa ggactgtggg
     1921 cagatgttca gcactacctc ctccctcaac aagcatcgga gattctgcga gggcaagaac
     1981 cattacacgc ctggcagcat cttcacccca ggcctgccct tgacccccag ccccatgatg
     2041 gacaagacaa aaccctcccc gaccctcaac cacgggggcc taggcttcag cgagtacttc
     2101 ccctccagac ctcatcctgg gagcctgccc ttctcggctg ctcctccggc cttccccgca
     2161 ctcactccgg gcttcccggg catctttcct ccatccctgt acccacgacc acctctgcta
     2221 cctcccacgc cgctgctcaa gagccccctg aaccacgcgc aggacgccaa gctacccagc
     2281 ccgctgggaa acccagccct gccccttgtc tccgcggtca gcaatagcag ccagggtgcc
     2341 acagcggcca ccgggtcaga ggagaaattt gatggccgct tggaagacgc atatgcggag
     2401 aaggtcaaaa ataggagccc tgacatgtcg gatggcagtg actttgagga tatcaacacc
     2461 acgaccggga cagacttgga cactaccacg ggcacggggt cagacctgga cagcgacctg
     2521 gacagtgaca gagacaaagg caaggacaag gggaagccag tggagagcaa acctgagttt
     2581 gggggtgcat ctgtgccccc tggggccatg aacagtgtgg ccgaggtacc ggccttctac
     2641 tcacagcatt ccttcttccc gccacccgag gaacagctgc tgacggcctc gggagctgcc
     2701 ggcgactcca tcaaggccat cgcgtccatc gcggagaaat acttcggtcc tggcttcatg
     2761 agcatgcagg agaagaagct gggctcacta ccctaccact ccgtgttccc cttccagttc
     2821 ctgcctaact ttccccactc cctctacccc tttacggacc gagccctcgc ccacaacttg
     2881 ctggtcaagg ctgagccaaa gtcaccccgg gatgccctca aggtgggcgg ccccagtgcg
     2941 gagtgcccct tcgacctcac caccaaacca aaagaggcca aacccgccct gctcgcaccc
     3001 aaggtccccc tcatcccctc atctggcgag gaacagccac tggacctgag catcggcagc
     3061 agggccaggg caagccagaa cggaggtggc cgtgagccgc ggaagaacca cgtctacggt
     3121 gaacggaagc cgggggtcag cgaggggctg cctaaggtgt gcccagcaca gctgccccag
     3181 cagccctcct tgcattatgc taagccttca ccgttcttca tggatcccat ctacagcagg
     3241 gtagaaaagc ggaaggtggc agaccctgtg ggagtcctga aagagaagta cctgcggccg
     3301 tccccacttc tgttccaccc ccagatgtca gccatagaaa ccatgacgga gaagctggag
     3361 agctttgcag ccatgaaggc cgactcaggc agctccctgc agcccctgcc tcaccacccg
     3421 ttcaacttcc gctccccacc cccaacgctc tcggatccca tcctcaggaa ggggaaggag
     3481 agatacacgt gcaggtactg tggcaagatc ttccccagat ctgcaaatct cacaagacat
     3541 ctgaggacac acacagggga gcagccatac aggtgcaagt actgtgaccg gtcattcagc
     3601 atctcctcca acctccagcg gcacgtgagg aacatccaca acaaagagaa gccgttcaag
     3661 tgccatctgt gcaaccgctg cttcgggcag cagaccaacc tagaccggca cctgaagaag
     3721 cacgaacacg agggcgcacc agtgagccag cactccgggg tgctcacgaa ccacctgggc
     3781 accagcgcct cctcccccac ctccgagtcg gacaaccatg cacttttaga tgagaaggaa
     3841 gattcttact tctccgagat ccgaaacttc atcgccaaca gcgagatgaa ccaggcatcc
     3901 actcgaatgg acaaacggcc tgagatccaa gacctggaca gcaacccacc gtgtccaggc
     3961 tcagccagtg caaagccaga ggacgtagag gaggaggaag aggaggagct ggaggaagag
     4021 gatgatgaca gcttagccgg gaagtcacag gaggacacgg tgtcccccac acctgagccc
     4081 caaggagtct atgaagatga agaggatgag gaaccaccca gcctgaccat gggctttgac
     4141 catacccgga ggcatatgca atgatgctgt ccctctctga agacactcct ctccacgccc
     4201 cctcccagag ctcactggat gcttggttga acatcacagg accctcgtca gagtccggag
     4261 cctttaaccc catcaaccac ctctgaggtc ctggaggccc cagggccaga gtccaaagcc
     4321 agggtaccag ctgcaggaga tggagaaggg gccagggagc agccccccac cctcaacacc
     4381 tccactttgc aaagtccagc ttctccattg aaactcagaa cccgaaggtc ccttgagtag
     4441 ccgctggcct tcatcacctc tcagaactgg cctcaaggac acgatctgca gtgggtgcgg
     4501 tgcacgggcc acccaggagc tgctcacagg agccatggat cagaaaactc gtgggcaagg
     4561 gtggggtctc tatcccagca ggagccagtt ggccacatcc aggcaactgc atggtatgaa
     4621 agaggaaatc ggaaagacgt gggcaagtgc tatggagaga gacctcatca atgattttta
     4681 taatgagaat cacatgatta agccttttgg taatcttatt gactatagag tctatttaag
     4741 catgtgggtt ttaaaaaaaa tagacggtat tttttaaaaa tcaaaaaaaa aaaaaaaaga
     4801 cttgcaaaat gtttttttaa aagtaatttt gcatcgcttt ggaatttcag cttattggca
     4861 aacccacacc tgccaggaca tcgagtacgg ctcgggtgtg ccctttataa tgtaaataat
     4921 ggagaatttt ttttctatct ctgacctgtt tgtataagcc aaggtgattc cagtgtgccc
     4981 gacacaggat aaggggcatg gagccactct gctaagtcag atgctgacta cacaagaatt
     5041 catggacgtg gtgcctggct gcaggtttgc agagggaggc caggagaaag aggtcgcctt
     5101 gccctgtgtg ctctgcagag gaatccacgg gtcccaccca agaccctccc caattgtatg
     5161 gggaagtcgg gagccagtgg ctcaggtctt ccatgctgga cacctaagga tcttcccctt
     5221 cagcagcagc actggccttg actgctgctc ttctgaaggc agggctctgg gccatgtgga
     5281 ggcctccagc cttctaccct ccccaaccct ggcaggctga tgccctcccc atggccactg
     5341 agtgtgggac gcctgcccac ctgctactcc actccaggac accaagcact acctgtgcct
     5401 aagactccag atcaatcaca cagtcgccac ttctgctctt tgtgtgggtt cctggtgaga
     5461 ataggacggg gacaggagga agatccaggg gacctgccac agcaaagaac agagacagta
     5521 cagaccccaa gaccggatgc ctcactcatt tgggacggtc agaacgtgtc tacttctctg
     5581 cttggatggg ctttaaatta tcccataggg gccaatttca aataatttct tttcctgatg
     5641 gaatttacct taatctgtat ataacttgta attttttttt ctaattcatt tctttcctta
     5701 ttttatttct tccttaacag tatttttggc attggacaac ttattctgaa gaaatgatgt
     5761 taatataagt atgtagtgaa ggaccaaacc gtgtgataag gttgtgtgct gtgtgatcgg
     5821 tacccaggga gcggggcggt gttaatgtgc caaatacccc tgtgtccctc cctccaggag
     5881 ttccacggtc accactgccc acttaccaga caatcatatg attttgttaa atttgagttt
     5941 cagttacatt ttaagacaag tgttctattt attttattgt ttggaaggag gggggcatat
     6001 cccaacaaga taagaaggaa cagagaccgc ctgggttgtc atttaaaact acaagagatt
     6061 gtgattgtgt gagcgtcagc aaactcggag cacgcgtgtc atgccgtggg cctgtcagcg
     6121 gttccctctg ggagcaactt aaacatccaa gcacagatct tttatatttg ctaaggccgt
     6181 tctgggacaa agaccgtcat ctttgctgat gctcagtggt ccaggctacg ctgggatccg
     6241 tgatggggat atcccagaag acaccattcc cctgcaggtt gcggtgaatc tcagtgacat
     6301 agcatggaac agtcagtcct gtgccgtgct cagaagcaca ctctcgagtg cacactggac
     6361 ggcctgaggc agcagggaca ctctgcagag gaacttgcca tggtccagtg gtaaggattc
     6421 gtaggtctaa ctgctcatgc ttctcatggg ttcgtgacat catctccatg gcgggccagg
     6481 cctcggcttg agaatcccag tttcctctag gtgggagcta gtcctgtgta agttcaacct
     6541 cagatataca tgccccactt ttgtaaaccc caaattatat gctttcttct cagaaagagc
     6601 aaggtgtgtg cttttttttt cccccgcggt atgactttct ctctccggta cggggagtct
     6661 atctggatgg ggatcttctg tggacctttt tgacagcagc agagcagcta aaggctccct
     6721 tctcatcctc tggcacgcac aacccctgtc catctctaac ccaagagtcc catctgtgct
     6781 gagttaaatg ctttgccccc acaaagtgat gattccaaac tcaggttatc ctgaacagtc
     6841 atccccttgg gcccagcact tggaatttga aggactccgt ccttgcttgc cacccccgac
     6901 aaagacagca cttgattttc tgcactgagt tccagatatt ctgcctctac tctgcattgc
     6961 cctcaaccag tgagctctgc ccacctggcg tctctgcagt cttaatagtg cccagctggc
     7021 tcaagcaagc atcagatcag gtacaggaga ccctctcaga gtcaggaagc tggaccaggt
     7081 gtgagttcaa aggtcttggc cactggagaa ccagaccatt aacttggctc tcttgcctgt
     7141 tgctgtgcag gatagagggg cagggcagag gttcagccac gattgtttcc caatgatact
     7201 ttccattgtt tgcacttgcc tcctcaaata gaaattcatt catcgggagg ccacctagct
     7261 tgcattccct ctagccccgg gcaaggccac acttaggccc tgtcattgct gccacaccta
     7321 ggatgatcag gtaggaaacg cagggcttca ctgtcctgca ggaaggtaga tcctgcatga
     7381 gtaagacccc gtacatccct gtgcaaaccc agggtgtaaa cctcagtaat gggagagcat
     7441 gacatggcca agcctgtggg gccctactct ccaaggccgg ggagagcagg taatctaccc
     7501 agacccagac tgacctgacc cctctgcctc ccagggtcca gacccagagc tcttggcttc
     7561 ctctccctca tctgcctcca cagtgagtgt ctgcgaagca cttgcttaaa tacatatcac
     7621 gtgttttaga ctcgaagctc aaagcactgg attgtggtcc ctgtccctgc ccaagtggct
     7681 gagacctact gagctgttca ctgtgccgtt cgaggtaggg aagaaaaggc ctccgagctg
     7741 ttgctgggac aggagggtgg agaggcctgg gacagacagc gctccctcct gccagtagac
     7801 actgggacat ccctgtccac ggagatcagc cgggtatcga aagccatgaa gactgtccct
     7861 agccctgagc gatactgtga caagacattc ttgaattctc cccagacaag gtcacttccc
     7921 ccaccattcc agccattgtc tgtctgtcac caattcacat cctcacttct aggaggggga
     7981 aaggttgagt ctttagatgt gcgattgatc cccttgcaac tgggggaagc tgggggtttc
     8041 ctcagtgtct cccacagcgc agctactctc ttcagtgtgg ggaaaggggg gccctggtgt
     8101 cagaatacgt aacttaaagc ctgtgcgtgt ggtggtgcgt ggtgtgtgtg tgtgtgcatg
     8161 tgtgctgtat gtgtgtactt tgaaccaata gtatataaat ataaatataa atatatatat
     8221 atatccctga cacccgcgag aatctccacc ctgtatgaga gttgccattg ttacattcag
     8281 atcggattca gttcgtttct gtttctgttt ttgttgttgt tgggtttttt tttttttcct
     8341 tttagaacta tatagtgttg agaaaggaat caaatgtaaa tgtctggttt ccatataacg
     8401 ttaaaaaaga aaattaaaaa accattaagg agggggctgg tgtctgccct gcccccttcc
     8461 ctgtaaattg ctgttgtgtt gataaagctg tgcatggctc gtgtttagcg gtcattattg
     8521 tgtctgtttg tggaattctt atgatgagga aaatcccgta gatgcactta ttgaatatgt
     8581 gattaggtct aagtcagggc caggagtccc aaaacgccca caagaaaaag ataaaaagaa
     8641 aaaaaaatgg accacagttc ctggtgacta tggaaatcgc cgtgagagaa tcgtgaatcg
     8701 agaagacgcg gcttgagaat agtcaaatgt gatttttttt tttttttttt ttttttgcag
     8761 atctcattct gaggcttatg gcaaagacaa atgtacttgt gtagaggttt ctgtgaggta
     8821 aaagccagga gggcctggct ttgaggtcaa tgctgtagaa taggactgac tggataccaa
     8881 atgtaatctt tccgatgcta caatgaattt atacacgaga ttgatatgca ataaatctgt
     8941 gtgtttttct aa
//
