LOCUS       XM_006539175            9129 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PR domain containing 16 (Prdm16),
            transcript variant X5, mRNA.
ACCESSION   XM_006539175
VERSION     XM_006539175.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006539175.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9129
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..9129
                     /gene="Prdm16"
                     /gene_synonym="5730557K01Rik; csp1; mel1"
                     /note="PR domain containing 16; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 18 ESTs, 362 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:70673"
                     /db_xref="MGI:MGI:1917923"
     CDS             636..4463
                     /gene="Prdm16"
                     /gene_synonym="5730557K01Rik; csp1; mel1"
                     /codon_start=1
                     /product="histone-lysine N-methyltransferase PRDM16
                     isoform X5"
                     /protein_id="XP_006539238.1"
                     /db_xref="GeneID:70673"
                     /db_xref="MGI:MGI:1917923"
                     /translation="MRSKARARKLAKSDGDVVNNMYEPDPDLLAGQSAEEETEDGILS
                     PIPMGPPSPFPTSEDFTPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKR
                     KMEIGERFGPYVVTPRAALKEADFGWEMLTDTEVSSQESCIKKISEDLGSEKFCVDAN
                     QAGSGSWLKYIRVACSCDDQNLAMCQINEQIYYKVIKDIEPGEELLVHVKEGAYSLGV
                     MAPSLDEDPTFRCDECDELFQCRLDLRRHKKYACSSAGAQLYEGLGEELKPEGLGVGS
                     DGQAHECKDCERMFPNKYSLEQHMIVHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSG
                     KRFECENCVKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFATSSGLKQHKHIHSTVK
                     PFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNH
                     YTPGSIFTPGLPLTPSPMMDKTKPSPTLNHGGLGFSEYFPSRPHPGSLPFSAAPPAFP
                     ALTPGFPGIFPPSLYPRPPLLPPTPLLKSPLNHAQDAKLPSPLGNPALPLVSAVSNSS
                     QGATAATGSEEKFDGRLEDAYAEKVKNRSPDMSDGSDFEDINTTTGTDLDTTTGTGSD
                     LDSDLDSDRDKGKDKGKPVESKPEFGGASVPPGAMNSVAEVPAFYSQHSFFPPPEEQL
                     LTASGAAGDSIKAIASIAEKYFGPGFMSMQEKKLGSLPYHSVFPFQFLPNFPHSLYPF
                     TDRALAHNLLVKAEPKSPRDALKVGGPSAECPFDLTTKPKEAKPALLAPKVPLIPSSG
                     EEQPLDLSIGSRARASQNGGGREPRKNHVYGERKPGVSEGLPKVCPAQLPQQPSLHYA
                     KPSPFFMDPIYSRVEKRKVADPVGVLKEKYLRPSPLLFHPQMSAIETMTEKLESFAAM
                     KADSGSSLQPLPHHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPRSANLTRHLRT
                     HTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKH
                     EHEGAPVSQHSGVLTNHLGTSASSPTSESDNHALLDEKEDSYFSEIRNFIANSEMNQA
                     STRMDKRPEIQDLDSNPPCPGSASAKPEDVEEEEEEELEEEDDDSLAGKSQEDTVSPT
                     PEPQGVYEDEEDEEPPSLTMGFDHTRRCVEERGGGLLALEPTPTFGKGLDLRRAAEEA
                     FEVKDVLNSTLDSEVLKQTLYRQAKNQAYAMMLSLSEDTPLHAPSQSSLDAWLNITGP
                     SSESGAFNPINHL"
ORIGIN      
        1 cggggaccga ggggagttcg ggaggagagc gctctggggc gacggcgaac gaaagctttt
       61 taattagtaa taaaacgcaa taaaacgcag caaaagcagc ctggacccgt gtcccaacta
      121 tcagcgcgtt tgcggggaga tccaaggaag tcgcgcagaa acccgctgcg ggccagtctt
      181 ctctacggcc cggcttgggc aggagccaca gcgctgcgca gcgcagggcc agggcgggga
      241 gacggtcacc tcgcctccag ggctacctgg gtccttttaa agtgtccagg gtgcgggccc
      301 cgggcgggag cgacgagcaa ggaatgtttt cttaaagggc cagttccgag ctgcgctgaa
      361 aagggggggg gaggggggag agagagaagt gaggtgaaga ccgagaaggc ctcggagagc
      421 cccccaatcc cgcgccgagg cggcggcggc ggcggcgcga cgaagaggat gatgaacaca
      481 ttgcaaagtt tttttggccc cggcgagggg tgtcagattg agtgctctgt gcgcatgtgc
      541 gaaggtgtcc aaactgacaa tgctagggag atgaagatag tgtgtagctg cttctgggct
      601 caaggaggag gagagagatt ccgcgagccg acaccatgcg atccaaggcg agggcgagga
      661 agctagccaa aagtgacggt gacgttgtaa ataatatgta tgaacctgac ccggacctgc
      721 tggccggcca gagtgccgag gaggagaccg aagacggcat cctgtccccc atccccatgg
      781 ggccaccgtc ccccttcccc accagcgagg acttcactcc caaggagggc tcgccctatg
      841 aggctcctgt ctacattcct gaagacattc caatcccacc agacttcgag ctacgagagt
      901 cctccatacc aggagctggc ctggggatct gggccaagcg gaagatggaa atcggggaga
      961 ggtttggccc ctacgtggtg acgccccggg ccgcactgaa ggaggccgac tttggatggg
     1021 agatgctgac ggatacagag gtgtcatccc aggagagctg catcaaaaag atctctgaag
     1081 acttgggtag cgagaagttc tgcgtggatg ccaatcaggc ggggtctggc agctggctca
     1141 agtacatccg tgtagcgtgt tcctgtgatg accaaaacct cgccatgtgt cagatcaacg
     1201 aacagattta ctataaagtc attaaggaca tcgagcctgg agaggaactg ttggtgcatg
     1261 tgaaagaagg tgcctactcc ttgggtgtca tggcccccag cttggatgag gaccccacat
     1321 tccgctgtga tgagtgtgat gagctcttcc agtgcaggct ggacctgagg cgccacaaga
     1381 agtacgcgtg cagctctgca ggagcccagc tctacgaggg cctaggggag gaactcaagc
     1441 ccgagggcct tggcgtgggc agcgacgggc aagcgcatga gtgcaaggat tgcgagcgga
     1501 tgttccccaa caagtacagc ttggagcaac acatgatcgt ccacacggaa gagcgtgagt
     1561 acaaatgtga ccagtgtccc aaggccttca actggaagtc caacctcatc cgccaccaga
     1621 tgtctcacga cagtggcaag cgcttcgaat gtgaaaactg tgtcaaggtg ttcacggacc
     1681 ccagcaacct ccagcgtcac atccgctcac agcatgtcgg tgcccgggcc catgcctgcc
     1741 ctgactgtgg caagaccttc gccacatcct ctggcctcaa acagcacaag catatccaca
     1801 gcacggtgaa gccattcata tgcgaggtct gccacaagtc ctacacgcag ttctccaacc
     1861 tgtgccggca caagcggatg cacgccgact gcaggacgca gatcaagtgc aaggactgtg
     1921 ggcagatgtt cagcactacc tcctccctca acaagcatcg gagattctgc gagggcaaga
     1981 accattacac gcctggcagc atcttcaccc caggcctgcc cttgaccccc agccccatga
     2041 tggacaagac aaaaccctcc ccgaccctca accacggggg cctaggcttc agcgagtact
     2101 tcccctccag acctcatcct gggagcctgc ccttctcggc tgctcctccg gccttccccg
     2161 cactcactcc gggcttcccg ggcatctttc ctccatccct gtacccacga ccacctctgc
     2221 tacctcccac gccgctgctc aagagccccc tgaaccacgc gcaggacgcc aagctaccca
     2281 gcccgctggg aaacccagcc ctgccccttg tctccgcggt cagcaatagc agccagggtg
     2341 ccacagcggc caccgggtca gaggagaaat ttgatggccg cttggaagac gcatatgcgg
     2401 agaaggtcaa aaataggagc cctgacatgt cggatggcag tgactttgag gatatcaaca
     2461 ccacgaccgg gacagacttg gacactacca cgggcacggg gtcagacctg gacagcgacc
     2521 tggacagtga cagagacaaa ggcaaggaca aggggaagcc agtggagagc aaacctgagt
     2581 ttgggggtgc atctgtgccc cctggggcca tgaacagtgt ggccgaggta ccggccttct
     2641 actcacagca ttccttcttc ccgccacccg aggaacagct gctgacggcc tcgggagctg
     2701 ccggcgactc catcaaggcc atcgcgtcca tcgcggagaa atacttcggt cctggcttca
     2761 tgagcatgca ggagaagaag ctgggctcac taccctacca ctccgtgttc cccttccagt
     2821 tcctgcctaa ctttccccac tccctctacc cctttacgga ccgagccctc gcccacaact
     2881 tgctggtcaa ggctgagcca aagtcacccc gggatgccct caaggtgggc ggccccagtg
     2941 cggagtgccc cttcgacctc accaccaaac caaaagaggc caaacccgcc ctgctcgcac
     3001 ccaaggtccc cctcatcccc tcatctggcg aggaacagcc actggacctg agcatcggca
     3061 gcagggccag ggcaagccag aacggaggtg gccgtgagcc gcggaagaac cacgtctacg
     3121 gtgaacggaa gccgggggtc agcgaggggc tgcctaaggt gtgcccagca cagctgcccc
     3181 agcagccctc cttgcattat gctaagcctt caccgttctt catggatccc atctacagca
     3241 gggtagaaaa gcggaaggtg gcagaccctg tgggagtcct gaaagagaag tacctgcggc
     3301 cgtccccact tctgttccac ccccagatgt cagccataga aaccatgacg gagaagctgg
     3361 agagctttgc agccatgaag gccgactcag gcagctccct gcagcccctg cctcaccacc
     3421 cgttcaactt ccgctcccca cccccaacgc tctcggatcc catcctcagg aaggggaagg
     3481 agagatacac gtgcaggtac tgtggcaaga tcttccccag atctgcaaat ctcacaagac
     3541 atctgaggac acacacaggg gagcagccat acaggtgcaa gtactgtgac cggtcattca
     3601 gcatctcctc caacctccag cggcacgtga ggaacatcca caacaaagag aagccgttca
     3661 agtgccatct gtgcaaccgc tgcttcgggc agcagaccaa cctagaccgg cacctgaaga
     3721 agcacgaaca cgagggcgca ccagtgagcc agcactccgg ggtgctcacg aaccacctgg
     3781 gcaccagcgc ctcctccccc acctccgagt cggacaacca tgcactttta gatgagaagg
     3841 aagattctta cttctccgag atccgaaact tcatcgccaa cagcgagatg aaccaggcat
     3901 ccactcgaat ggacaaacgg cctgagatcc aagacctgga cagcaaccca ccgtgtccag
     3961 gctcagccag tgcaaagcca gaggacgtag aggaggagga agaggaggag ctggaggaag
     4021 aggatgatga cagcttagcc gggaagtcac aggaggacac ggtgtccccc acacctgagc
     4081 cccaaggagt ctatgaagat gaagaggatg aggaaccacc cagcctgacc atgggctttg
     4141 accatacccg gaggtgtgtt gaggagcgag gaggcggcct gttagctttg gagccgacgc
     4201 cgacctttgg gaaggggctg gatctccgca gagcagctga ggaagcattt gaagttaaag
     4261 atgtgcttaa ttccacctta gattctgagg ttttaaaaca aaccctgtac aggcaggcta
     4321 agaaccaggc atatgcaatg atgctgtccc tctctgaaga cactcctctc cacgccccct
     4381 cccagagctc actggatgct tggttgaaca tcacaggacc ctcgtcagag tccggagcct
     4441 ttaaccccat caaccacctc tgaggtcctg gaggccccag ggccagagtc caaagccagg
     4501 gtaccagctg caggagatgg agaaggggcc agggagcagc cccccaccct caacacctcc
     4561 actttgcaaa gtccagcttc tccattgaaa ctcagaaccc gaaggtccct tgagtagccg
     4621 ctggccttca tcacctctca gaactggcct caaggacacg atctgcagtg ggtgcggtgc
     4681 acgggccacc caggagctgc tcacaggagc catggatcag aaaactcgtg ggcaagggtg
     4741 gggtctctat cccagcagga gccagttggc cacatccagg caactgcatg gtatgaaaga
     4801 ggaaatcgga aagacgtggg caagtgctat ggagagagac ctcatcaatg atttttataa
     4861 tgagaatcac atgattaagc cttttggtaa tcttattgac tatagagtct atttaagcat
     4921 gtgggtttta aaaaaaatag acggtatttt ttaaaaatca aaaaaaaaaa aaaaagactt
     4981 gcaaaatgtt tttttaaaag taattttgca tcgctttgga atttcagctt attggcaaac
     5041 ccacacctgc caggacatcg agtacggctc gggtgtgccc tttataatgt aaataatgga
     5101 gaattttttt tctatctctg acctgtttgt ataagccaag gtgattccag tgtgcccgac
     5161 acaggataag gggcatggag ccactctgct aagtcagatg ctgactacac aagaattcat
     5221 ggacgtggtg cctggctgca ggtttgcaga gggaggccag gagaaagagg tcgccttgcc
     5281 ctgtgtgctc tgcagaggaa tccacgggtc ccacccaaga ccctccccaa ttgtatgggg
     5341 aagtcgggag ccagtggctc aggtcttcca tgctggacac ctaaggatct tccccttcag
     5401 cagcagcact ggccttgact gctgctcttc tgaaggcagg gctctgggcc atgtggaggc
     5461 ctccagcctt ctaccctccc caaccctggc aggctgatgc cctccccatg gccactgagt
     5521 gtgggacgcc tgcccacctg ctactccact ccaggacacc aagcactacc tgtgcctaag
     5581 actccagatc aatcacacag tcgccacttc tgctctttgt gtgggttcct ggtgagaata
     5641 ggacggggac aggaggaaga tccaggggac ctgccacagc aaagaacaga gacagtacag
     5701 accccaagac cggatgcctc actcatttgg gacggtcaga acgtgtctac ttctctgctt
     5761 ggatgggctt taaattatcc cataggggcc aatttcaaat aatttctttt cctgatggaa
     5821 tttaccttaa tctgtatata acttgtaatt tttttttcta attcatttct ttccttattt
     5881 tatttcttcc ttaacagtat ttttggcatt ggacaactta ttctgaagaa atgatgttaa
     5941 tataagtatg tagtgaagga ccaaaccgtg tgataaggtt gtgtgctgtg tgatcggtac
     6001 ccagggagcg gggcggtgtt aatgtgccaa atacccctgt gtccctccct ccaggagttc
     6061 cacggtcacc actgcccact taccagacaa tcatatgatt ttgttaaatt tgagtttcag
     6121 ttacatttta agacaagtgt tctatttatt ttattgtttg gaaggagggg ggcatatccc
     6181 aacaagataa gaaggaacag agaccgcctg ggttgtcatt taaaactaca agagattgtg
     6241 attgtgtgag cgtcagcaaa ctcggagcac gcgtgtcatg ccgtgggcct gtcagcggtt
     6301 ccctctggga gcaacttaaa catccaagca cagatctttt atatttgcta aggccgttct
     6361 gggacaaaga ccgtcatctt tgctgatgct cagtggtcca ggctacgctg ggatccgtga
     6421 tggggatatc ccagaagaca ccattcccct gcaggttgcg gtgaatctca gtgacatagc
     6481 atggaacagt cagtcctgtg ccgtgctcag aagcacactc tcgagtgcac actggacggc
     6541 ctgaggcagc agggacactc tgcagaggaa cttgccatgg tccagtggta aggattcgta
     6601 ggtctaactg ctcatgcttc tcatgggttc gtgacatcat ctccatggcg ggccaggcct
     6661 cggcttgaga atcccagttt cctctaggtg ggagctagtc ctgtgtaagt tcaacctcag
     6721 atatacatgc cccacttttg taaaccccaa attatatgct ttcttctcag aaagagcaag
     6781 gtgtgtgctt tttttttccc ccgcggtatg actttctctc tccggtacgg ggagtctatc
     6841 tggatgggga tcttctgtgg acctttttga cagcagcaga gcagctaaag gctcccttct
     6901 catcctctgg cacgcacaac ccctgtccat ctctaaccca agagtcccat ctgtgctgag
     6961 ttaaatgctt tgcccccaca aagtgatgat tccaaactca ggttatcctg aacagtcatc
     7021 cccttgggcc cagcacttgg aatttgaagg actccgtcct tgcttgccac ccccgacaaa
     7081 gacagcactt gattttctgc actgagttcc agatattctg cctctactct gcattgccct
     7141 caaccagtga gctctgccca cctggcgtct ctgcagtctt aatagtgccc agctggctca
     7201 agcaagcatc agatcaggta caggagaccc tctcagagtc aggaagctgg accaggtgtg
     7261 agttcaaagg tcttggccac tggagaacca gaccattaac ttggctctct tgcctgttgc
     7321 tgtgcaggat agaggggcag ggcagaggtt cagccacgat tgtttcccaa tgatactttc
     7381 cattgtttgc acttgcctcc tcaaatagaa attcattcat cgggaggcca cctagcttgc
     7441 attccctcta gccccgggca aggccacact taggccctgt cattgctgcc acacctagga
     7501 tgatcaggta ggaaacgcag ggcttcactg tcctgcagga aggtagatcc tgcatgagta
     7561 agaccccgta catccctgtg caaacccagg gtgtaaacct cagtaatggg agagcatgac
     7621 atggccaagc ctgtggggcc ctactctcca aggccgggga gagcaggtaa tctacccaga
     7681 cccagactga cctgacccct ctgcctccca gggtccagac ccagagctct tggcttcctc
     7741 tccctcatct gcctccacag tgagtgtctg cgaagcactt gcttaaatac atatcacgtg
     7801 ttttagactc gaagctcaaa gcactggatt gtggtccctg tccctgccca agtggctgag
     7861 acctactgag ctgttcactg tgccgttcga ggtagggaag aaaaggcctc cgagctgttg
     7921 ctgggacagg agggtggaga ggcctgggac agacagcgct ccctcctgcc agtagacact
     7981 gggacatccc tgtccacgga gatcagccgg gtatcgaaag ccatgaagac tgtccctagc
     8041 cctgagcgat actgtgacaa gacattcttg aattctcccc agacaaggtc acttccccca
     8101 ccattccagc cattgtctgt ctgtcaccaa ttcacatcct cacttctagg agggggaaag
     8161 gttgagtctt tagatgtgcg attgatcccc ttgcaactgg gggaagctgg gggtttcctc
     8221 agtgtctccc acagcgcagc tactctcttc agtgtgggga aaggggggcc ctggtgtcag
     8281 aatacgtaac ttaaagcctg tgcgtgtggt ggtgcgtggt gtgtgtgtgt gtgcatgtgt
     8341 gctgtatgtg tgtactttga accaatagta tataaatata aatataaata tatatatata
     8401 tccctgacac ccgcgagaat ctccaccctg tatgagagtt gccattgtta cattcagatc
     8461 ggattcagtt cgtttctgtt tctgtttttg ttgttgttgg gttttttttt ttttcctttt
     8521 agaactatat agtgttgaga aaggaatcaa atgtaaatgt ctggtttcca tataacgtta
     8581 aaaaagaaaa ttaaaaaacc attaaggagg gggctggtgt ctgccctgcc cccttccctg
     8641 taaattgctg ttgtgttgat aaagctgtgc atggctcgtg tttagcggtc attattgtgt
     8701 ctgtttgtgg aattcttatg atgaggaaaa tcccgtagat gcacttattg aatatgtgat
     8761 taggtctaag tcagggccag gagtcccaaa acgcccacaa gaaaaagata aaaagaaaaa
     8821 aaaatggacc acagttcctg gtgactatgg aaatcgccgt gagagaatcg tgaatcgaga
     8881 agacgcggct tgagaatagt caaatgtgat tttttttttt tttttttttt tttgcagatc
     8941 tcattctgag gcttatggca aagacaaatg tacttgtgta gaggtttctg tgaggtaaaa
     9001 gccaggaggg cctggctttg aggtcaatgc tgtagaatag gactgactgg ataccaaatg
     9061 taatctttcc gatgctacaa tgaatttata cacgagattg atatgcaata aatctgtgtg
     9121 tttttctaa
//
