LOCUS       XM_036155567            5608 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PR domain containing 1, with ZNF domain
            (Prdm1), transcript variant X3, mRNA.
ACCESSION   XM_036155567
VERSION     XM_036155567.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5608
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..5608
                     /gene="Prdm1"
                     /gene_synonym="b2b1765Clo; Blimp-1; Blimp1; PRDI-BF1;
                     ZNFPR1A1"
                     /note="PR domain containing 1, with ZNF domain; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 9 ESTs, 92 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:12142"
                     /db_xref="MGI:MGI:99655"
     CDS             674..3115
                     /gene="Prdm1"
                     /gene_synonym="b2b1765Clo; Blimp-1; Blimp1; PRDI-BF1;
                     ZNFPR1A1"
                     /codon_start=1
                     /product="PR domain zinc finger protein 1 isoform X3"
                     /protein_id="XP_036011460.1"
                     /db_xref="GeneID:12142"
                     /db_xref="MGI:MGI:99655"
                     /translation="MREAYLRCWIFSWKNVWVRPCQRLHFKTVLLQGSLLYTALDSYS
                     TVQAAPKSSSGSVKFQGLAETGIMKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGA
                     DGGTSVQAEASLPRNLLFKYAANNSKEVIGVVSKEYIPKGTRFGPLIGEVYTNDTVPK
                     NANRKYFWRIYSREEFHHFIDGFNEEKSNWMRYVNPAHSAREQNLAACQNGMNIYFYT
                     IKPIPANQELLVWYCRDFAERLHYPYPGELTVINLTQTESNPKQYSSEKNELYPKSVP
                     KREYSVKEILKLDSNPSKRKDIYRSNISPFTLEKDMDGFRKNGSPDMPFYPRVVYPIR
                     APLPEDFLKASLAYGMERPTYITHSPLPSSTTPSPPASSSPEQSLKSSSPHSSPGNTV
                     SPLAPGLPEHRDSYSYLNVSYGSEGLGSYPGYAPAPHLPPAFIPSYNAHYPKFLLPPY
                     GISSNGLSTMNNINGINNFSLFPRLYPVYSNLLSGSSLPHPMLNPASLPSSLPTDGAR
                     RLLPPEHPKEVLIPAPHSAFSLTGAAASMKDESSPPSGSPTAGTAATSEHVVQPKATS
                     SVMAAPSTDGAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVC
                     HKRFSSTSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCAQCHK
                     SYIHLCSLKVHLKGNCPAGPAAGLPLEDLTRINEEIERFDISDNADRLEDMEDSVDVT
                     SMVEKEILAVVRKEKEETSLKVSLQRNMGNGLLSSGCSLYESSDLSLMKLPHSNPLPL
                     VPVKVKQETVEPMDP"
ORIGIN      
        1 ttatttcatt ggcaatgact ccaggactac acagcgaaat tgtattgcat gtgctgccaa
       61 aatactttag ctctttcctt cgaagtacgt cggatcctgt aattgagaca ccgagtttag
      121 gtgactaggg ttttcttttg aggaggagtc ccccaccccg ccccgctctg ccgcgacagg
      181 aagctagcga tccggaggac ttagaataca atcgtagtgt gggtaaacat ggagggcaag
      241 cgcctgcaaa gggaagtaag aagattccca gtccttgttg aaatccattt gcaaacagag
      301 gaagctgccg cgggtcgcag tcggtggggg gaagccctga accccacgct gcacggctgg
      361 gctggccagg tgcggccacg cccccatcgc ggcggctggt aggagtgaat cagaccgtca
      421 gtattggtaa agaagtctgc ggcagggcag ggagggggaa gagtagtcag tcgctcgctc
      481 actcgctcgc tcgcacagac actgctgcag tgacactcgg ccctccagtg tcgcggagac
      541 gcaagagcag cgcgcagcac ctgtccgccc ggagcgagcc cggcccgcgg ccgtagaaaa
      601 ggagggaccg ccgaggtgcg cgtcagtact gctcagcccg gcagggacgc gggaggatgt
      661 ggactgggtg gacatgagag aggcttatct cagatgttgg atcttctctt ggaaaaacgt
      721 gtgggtacga ccttgccaaa ggctgcattt taaaaccgtg cttcttcaag gcagtctact
      781 ttacacggct ttggactctt actcaactgt acaagctgcc cccaagtcta gctccggctc
      841 cgtgaagttt caaggactgg cagagactgg gatcatgaaa atggacatgg aggacgctga
      901 tatgactttg tggacagagg ccgagtttga agagaagtgt acatacatag tgaacgacca
      961 cccctgggat tccggcgctg acgggggtac ttctgttcaa gccgaggcat ccttaccaag
     1021 gaacctgctt ttcaagtatg ctgccaacaa cagcaaagag gttattggcg tggtaagtaa
     1081 ggagtacata ccgaagggaa cacgctttgg acccctcatc ggtgaagtct acactaatga
     1141 cacagttccc aagaatgcca acaggaagta tttttggcgg atctattcca gagaggagtt
     1201 ccaccacttc attgatggct ttaatgagga gaaaagcaac tggatgcgct acgtgaatcc
     1261 agctcactct gcccgggagc aaaacctggc tgcctgtcag aacgggatga acatctactt
     1321 ctacactatt aagcctatcc ctgccaacca ggaacttctt gtgtggtatt gtcgggactt
     1381 tgcggagagg ctccactacc cttatcctgg agagctcaca gtgataaatc tcacacaaac
     1441 ggaaagcaac ccaaagcaat acagtagtga gaaaaatgaa ctctacccaa agagtgtccc
     1501 caagagagag tacagcgtga aagaaattct aaaactggac tccaatccct ccaaaaggaa
     1561 ggacatctac cgttccaaca tttcaccctt cactttagaa aaggacatgg atggctttcg
     1621 gaaaaatggg agccccgaca tgcccttcta ccctcgggtg gtttatccta tccgggcacc
     1681 tctgccagaa gactttttga aagcgtccct ggcctatggg atggagagac ccacctacat
     1741 aactcacagt ccccttccgt cttccacaac tccaagtccc cctgcgagca gcagcccgga
     1801 gcagagcctt aagagctcca gcccccacag cagcccggga aacacggtgt cacccctggc
     1861 gccaggcctc ccagaacacc gggactccta ctcctacttg aatgtttcct atggttccga
     1921 gggcctgggc tcctaccctg gctatgcacc tgccccccac ctcccaccag ctttcattcc
     1981 ttcttacaat gctcactacc ccaagttcct gttgccaccg tacggcatta gttccaatgg
     2041 cttgagcacc atgaacaaca tcaatggtat caacaacttc agcctcttcc ctaggttgta
     2101 tcccgtctac agtaacctcc ttagtggcag cagcctgcct catcccatgc tcaatccagc
     2161 ttccctaccg agttccctgc ctaccgatgg agcccggagg ctgcttccac cggagcaccc
     2221 caaagaggtg cttatcccag caccccacag tgccttctcc cttaccgggg ctgcagccag
     2281 catgaaggac gagagtagtc cccccagcgg atctccaacg gcgggaactg cagccacgtc
     2341 agaacacgtg gtacaaccca aagctacctc atcagtgatg gcggccccca gcactgacgg
     2401 agccatgaat ctcattaaaa acaaacgaaa catgactggt tacaagactc ttccttaccc
     2461 tctgaagaaa cagaatggca agatcaagta tgagtgcaat gtctgtgcca agacgttcgg
     2521 tcagctctcc aacctgaagg tctgccacaa gagatttagc agcacaagca atctcaagac
     2581 ccaccttcga ttgcattctg gagaaaaacc ttaccaatgt aaggtgtgcc ctgccaagtt
     2641 tacgcaattt gtgcacctga agctgcacaa gcgactgcat acccgggagc ggcctcacaa
     2701 gtgtgcccag tgtcacaaga gctacatcca tctctgcagc ctcaaggtcc acctgaaggg
     2761 caactgccct gcgggcccag ctgctgggct gcctttggag gatctgaccc gaatcaatga
     2821 agaaattgag aggttcgaca tcagcgacaa tgcagaccgt cttgaggaca tggaggacag
     2881 tgtcgatgtg acctccatgg tggagaagga gattctagct gtggtcagaa aagagaaaga
     2941 agaaaccagt ctgaaagtgt ctttgcaaag aaacatgggg aacggcctcc tctcctcagg
     3001 gtgcagcctc tatgagtcat cggacctgtc cctcatgaag ttgcctcaca gcaacccact
     3061 acctctggtg cctgtaaagg tcaaacaaga aacagttgaa ccgatggatc cttaagattt
     3121 tcagaaaata agtgtttcgt gttgcttctt agggtatggc ttggtgaatc agggtgcctt
     3181 tagcaaattg cttgtacatg actccagatc tgcaaagctc cgctggcacc gggtgcttcc
     3241 ctgcacctct ctggaattaa agaaggactc caatgttacc aaaatctcag ggcataaatg
     3301 aggcaaagac tcactatata tacatatata catatataca tattataaat atatatatac
     3361 ttatttacag ccatgtctat atatttgaac ctgtgtattt tgaatatttg tgtggatatg
     3421 tttgcatagc gccttcctat tactaaaact attgcctagc cataattatt ttttcaatga
     3481 taattcttca taatttatta tacagtttat ctttcaaaaa gcaataatta aagaagttta
     3541 caatgactgg aaagattctt tgtaatttga gtataaatgt tgtatctttg tcctgtggcc
     3601 attctttgta gataatttct gcacatctgt ttaaatgcct gagacttaga agatagctct
     3661 gtgatttcag gcaacctttc tctatgataa tgctttaaaa tgaggttttg atattgccaa
     3721 agtcatgtgg ttggtgtgtt aactcagaag atcacacaat ctgagtgaca ttctctaagt
     3781 tggggataca tgtgcagaat tgctcagcaa taatttgagg ggaaggaaga agaaaaatat
     3841 tttatgtttc agaatgatgg tttggttttc ctcctcctag tcacaatttt accaaacagt
     3901 gacaggaagg ctttgccaac ctgtctccca atgtcacatg accattctga gtggccatat
     3961 gactttggca tccctgggtg ttatctgaaa atgtgaagaa gataaaaaag ccgtgttcag
     4021 aagatctgtc gtaaagcaca gatgttgtgt gtgtgtgtgt gtgggttggg gggtttgagt
     4081 ctggctgtca ttttgctgtt ggcttgtttt tgttttttta atatcaaaat tgcacaaagc
     4141 tggtgcccta ccaagaagga tttgatatag aaaggctcag gccacactta aaatacaagc
     4201 aagcaaagag aacagaaaaa aataaaagta aaaacgggta ttcttatcat cttaggttaa
     4261 gcgggtaatg aacattcctg tccccaacgc atcaactgta ttgtatctgt aaaactcagc
     4321 ttttctcagt atttgtgttt ttgcattgta taattaactt aattaaagat gaaagggcat
     4381 tgcaaaagtg ttcaacaatt acctcattga gtgtatccag taggagtgca ggaattaatg
     4441 tcgtatctca tgagttgcta cccagctgag cgtgtgtgct tccaaatggt aggctgggtg
     4501 gttcggtcct gtattctcct aagcccaaag gttacctgtt ggtgttcaag gtgtaataaa
     4561 gaatgctgta tatttatgaa cctatttata ccagtatacc atgtgtatat atgatatatt
     4621 tataaccact taaattgtga gccaagccat gtaaaagaac ctatttttcc taagagcaaa
     4681 aagaatctct ctgaagtttt gcttaaaact ccatgacctc gctatgactt tggtgcttgg
     4741 gcaccaccct gcctactacc agagagcaga gcacctcagt gcagaggtga gggtgtgtag
     4801 catcttggga tggatagaaa caccacacca tccagtcgca tttgatggcc ttgctacatg
     4861 tgtgtcagtt gggtcacaga ataaaaatca tttttctatt tctgctctcc tcttcctctt
     4921 cctcttcttc ttcctctttc tctccctcct ctagaaccct gactcatgct cactgctcag
     4981 tctgatgctt accttagagt tttgtatata tagatcaact tacaaagagg gaaaacttca
     5041 gatcctctgg gggaaaccca agagccttac tgacctgttg ctgtgactag ctagatgggt
     5101 ttctctttac cttccaagga tcaaaaccag agattccaca catgctagca agcaagcaag
     5161 ctgtcactgg gctgcagccc caacaagact gacatttctg gatgcatctg tatttgagaa
     5221 aaatactcac ttaattgtag gttaaccaaa gcatgacctg acattgacac caaatacaaa
     5281 tacgatttct ttgcagtgaa cttgggttgt tttcctcctg tgcttttctt gtgttgggag
     5341 gatttttaca aggacaattg cttttcttgc catctgtctt cctcttaggc ctcttacatg
     5401 agagtgttga gcccacaatg aacagtggtt ggttggttgg ttggttggtt tgtttgtttg
     5461 ttttttcctc agagttaaaa ctgaccaaag ttattggctt tttactttgc tagaacaaca
     5521 aactatctta tgtttacgta ctggtttaca ttgttattta tgtgcaaatt gtcaaaatgt
     5581 aaattaaaat ataaatgttc atgcttta
//
