LOCUS       NM_001200055            2901 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus PRAME like 60 (Pramel60), mRNA.
ACCESSION   NM_001200055 XM_001476493 XM_001476505
VERSION     NM_001200055.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2901)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2901)
  AUTHORS   Magdaleno S, Jensen P, Brumwell CL, Seal A, Lehman K, Asbury A,
            Cheung T, Cornelius T, Batten DM, Eden C, Norland SM, Rice DS,
            Dosooye N, Shakya S, Mehta P and Curran T.
  TITLE     BGEM: an in situ hybridization database of gene expression in the
            embryonic and adult mouse nervous system
  JOURNAL   PLoS Biol 4 (4), e86 (2006)
   PUBMED   16602821
REFERENCE   3  (bases 1 to 2901)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   4  (bases 1 to 2901)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   5  (bases 1 to 2901)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6  (bases 1 to 2901)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   7  (bases 1 to 2901)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   8  (bases 1 to 2901)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   9  (bases 1 to 2901)
  AUTHORS   Ko MS, Kitchen JR, Wang X, Threat TA, Wang X, Hasegawa A, Sun T,
            Grahovac MJ, Kargul GJ, Lim MK, Cui Y, Sano Y, Tanaka T, Liang Y,
            Mason S, Paonessa PD, Sauls AD, DePalma GE, Sharara R, Rowe LB,
            Eppig J, Morrell C and Doi H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
REFERENCE   10 (bases 1 to 2901)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125382.2 and BG069406.2.
            
            On or before Jan 13, 2011 this sequence version replaced
            XM_001476505.2, XM_001476493.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-132               AC125382.2         12710-12841
            133-446             AC125382.2         21023-21336
            447-1037            AC125382.2         21997-22587
            1038-2255           AC125382.2         23565-24782
            2256-2901           BG069406.2         1-646               c
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2901
                     /gene="Pramel60"
                     /gene_synonym="Gm16513"
                     /note="PRAME like 60"
                     /db_xref="GeneID:100041253"
                     /db_xref="MGI:MGI:2141041"
     exon            1..132
                     /gene="Pramel60"
                     /gene_synonym="Gm16513"
                     /inference="alignment:Splign:2.1.0"
     exon            133..446
                     /gene="Pramel60"
                     /gene_synonym="Gm16513"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..1605
                     /gene="Pramel60"
                     /gene_synonym="Gm16513"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041253"
                     /protein_id="NP_001186984.1"
                     /db_xref="CCDS:CCDS51558.1"
                     /db_xref="GeneID:100041253"
                     /db_xref="MGI:MGI:2141041"
                     /translation="MSGQTPPTLQKRARQTQLRDEALAISPLENVPAVYIPWLFQEAF
                     AGRHNSLIKTMVAAWPFQYLPVGSLINMHNLETLQALLDGVDRRLTRKFPPGRPKLQV
                     LDMRNVHHVFWNIGSDANDSDSDAETLDEKQVVKALPRYALRQRLKIIVDLSISSQLN
                     EEKAYFLNWAKQRKGSINFCCTKMKIWDAPDKVIREIMNVFHPEHITELELYTDWTLL
                     RLAHFAPYFGQMKNLEKVFLAPLHKNTSPIMNITGASKVKCIKKIISQFSKFNCLQHV
                     FMKRVHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGV
                     TLFALDLMPLRGLLGKLAGTLKSLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSND
                     FSMAILKDLLQHTATWSKMNVEQYPVPLECYDALGHVSRERFVELCQELMDTLRAKRE
                     PKSISFATNVCQNCGKTCVYGQGARLCSCLQ"
     exon            447..1037
                     /gene="Pramel60"
                     /gene_synonym="Gm16513"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..2901
                     /gene="Pramel60"
                     /gene_synonym="Gm16513"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctctgtgtg tgtgggactc agcaactgct agatccttgg acttccattc acatctgctg
       61 ctgaccattg ttggggagtt ggactacaga ctgtgagtca tcatcagttc ccttactata
      121 cagtgactac cagagccttc ttcctgaaga cctgagagga tgagtggtca gaccccaccc
      181 acactccaga agcgagcaag gcagacacag ctgagagatg aggctttggc catatcccct
      241 ctggagaacg tgccagctgt gtacatccca tggctgttcc aagaggcctt tgctggcaga
      301 cacaactcgc tcataaagac aatggtggca gcctggcctt tccaatatct ccctgtgggg
      361 tcattgataa atatgcataa cctggaaacc ttgcaagctc tgctagatgg tgtagacagg
      421 agactgacaa gaaaatttcc ccccgggagg ccaaaacttc aggttctcga catgagaaat
      481 gtgcaccatg tcttctggaa catagggagc gatgcaaatg acagtgactc tgatgcagag
      541 accttggatg aaaagcaagt agtgaaggcc cttcccagat atgcactgag gcagcgtctg
      601 aagatcatag ttgatctgtc aatcagttct cagctcaatg aagaaaaagc atatttcttg
      661 aattgggcca agcagagaaa ggggtccata aatttctgct gtacaaagat gaagatctgg
      721 gatgcaccag acaaagttat cagagaaatc atgaatgttt ttcatccaga gcacattaca
      781 gaattagaac tgtataccga ctggactctg ttgcggctgg cacattttgc tccctacttt
      841 gggcagatga aaaatcttga aaaagtcttc ctggcaccac tccacaagaa tacctcccct
      901 attatgaata taacaggggc ctcaaaagtc aagtgtatca aaaagattat ttctcagttt
      961 tccaaattca actgtctcca acatgtcttc atgaaacgtg tccattttct cagagaccac
     1021 ctgcatcaga tcctagggtg cctgaggacg cccttgcaga ccctctccat cactcactgc
     1081 ctaatttcac agacagactt ggattccttt tcctgctgtc acaacctttt taagttaaaa
     1141 aatctggaaa tcagaggagt gacattattt gctctcgatc ttatgcctct gagaggtctc
     1201 ctaggaaaac tggcaggtac tcttaagtct ctggattttc agtggtgtag catgaaggac
     1261 tcccagctca ttgtcctctt acctgccctc agtcaatgct ctcagctcaa ccagatcaac
     1321 ttctacagca atgacttctc catggccatc ctgaaggacc ttttgcagca cacagccacc
     1381 tggagcaaga tgaatgtgga acaataccct gtccctctgg agtgctatga tgcattgggt
     1441 catgtctcca gagaaagatt tgtggaactt tgtcaggagc tcatggatac cctcagggcc
     1501 aaaagagagc ctaagagcat atcttttgca acaaatgtct gccaaaattg tggcaagacc
     1561 tgtgtctatg gccagggggc aaggctttgt tcctgtttgc agtaaacatg gatacaggac
     1621 ttctgactat gaataaatga catgcttggg acacatctct catccaaggt gctcagagac
     1681 tgtgacttca gacacttccc atatggttag aagtaaagag atgggtagtg actgggaccc
     1741 tgaatgctta gattgaaatg tggactattc caatagactg ttggaccagg ggcatgatgg
     1801 agtcagaata acagtttggc atttatatgt ggcttctgcc ccgacagtat atatagatgc
     1861 tttttgtgta cctatcaacc tggatgatgt ctccccgggg tcttggactt tttccaacct
     1921 tactaccagg ttcagtgtca ggatgataga ataggtccag gtttggaaag acactgttgt
     1981 tttatgaagg aagcaaagtt ccaggtgaat atggcatgta taaaataaaa gttttcttga
     2041 cacatctttc cctagtctct tgcctgggct acatgtataa cacttttggg tggctgatca
     2101 gttatgtgca caaaacattt acattaatgt gagcaacata gacacaaatc ttgtgaagag
     2161 ggattaaaat gatcacagat ggttaatatc cagtatgttg agaccacaag gcaccttgga
     2221 cccctcaaag atgcctaaag gtaagaagac aacataaagc aaagaaaaac aggctttcca
     2281 ttctagcttt gaactcctga acttttggtc atgccttaat gagcttacta acaagaacct
     2341 ctatatacag tctttatgcc acatgtctct agagctcaat tcccttggag tcccaaactc
     2401 tatgaagtaa ccatagtgta taaaaaggtg cccactatta tgcaggtacc tttgctacat
     2461 aaagtattta ctttcaaaaa gacgtgtatt ttaagtcttc aattttatta aaagcaaaag
     2521 aaaaatctcc tttgcctagt cattaaccct ttctgtatgg taaactatca ataaaacaat
     2581 ttatcgttac tctgtattta cggaacactt agaacatgag ttctctgttt aaatatcatt
     2641 gttattttct gcattgaata gcatagctaa acttaaggcc tcggcaacag atgccctctg
     2701 gagataagtc aaaatgtaca cattgatgca aggcttgtca caattcaaaa ggtggataaa
     2761 ggaatcagct attgttggac acatggacat ttaggctggc ttaagggata gaagaagaca
     2821 aagaaacaac aaacctctct caggctcttt tctgtctttc cccacaacct gactccctgt
     2881 ctgaatgtcc agttctctgg c
//
