LOCUS       NM_001167793            2041 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus PRAME like 57 (Pramel57), transcript variant 1, mRNA.
ACCESSION   NM_001167793
VERSION     NM_001167793.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P,
            Eppig JJ, Solter D and Knowles BB.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco
            G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T,
            Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T,
            Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ,
            Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A,
            Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso
            J, Hide W and Ko MS.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   3  (bases 1 to 2041)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125326.4, CN723928.1 and DV655246.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: DV653222.1 [ECO:0000331]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               AC125326.4         164281-164381
            102-573             CN723928.1         86-557
            574-850             AC125326.4         173514-173790
            851-1588            DV655246.1         1-738
            1589-2041           AC125326.4         175489-175941
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2041
                     /gene="Pramel57"
                     /gene_synonym="100041354; Gm3286"
                     /note="PRAME like 57"
                     /db_xref="GeneID:100041354"
                     /db_xref="MGI:MGI:3781464"
     exon            1..134
                     /gene="Pramel57"
                     /gene_synonym="100041354; Gm3286"
                     /inference="alignment:Splign:2.1.0"
     exon            135..448
                     /gene="Pramel57"
                     /gene_synonym="100041354; Gm3286"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..1607
                     /gene="Pramel57"
                     /gene_synonym="100041354; Gm3286"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041354 isoform 1"
                     /protein_id="NP_001161265.1"
                     /db_xref="CCDS:CCDS80342.1"
                     /db_xref="GeneID:100041354"
                     /db_xref="MGI:MGI:3781464"
                     /translation="MSGQTPPTLQKLARQTLLRDEALAISSLEELPAVVFPPLFQEAF
                     AGRLNKLIKAMVAAWPFHDLPVGPLINMHNLETLQALLDGVDMRLTRKFHPWRPKLQV
                     LDMRNVDHVFWNIWSDANDSDSDAETLDEKQVVKAPRRYALRQRLKIIVDLSISSQLN
                     EQKAYFLNWAKQRKGSINFCCTKMKIWDAPDEVIREIMNVFHPEHITELELYTDWTLL
                     RLAHFAPYFGQMKNLERVFLAPLHKNTSPIMNLTRDSKVKCIKKIISQFSKFNCLQHV
                     FMKRVHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGV
                     TLFALDLMPLRGLLGKLAGTLESLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSND
                     FSMAILKDLLQHTANWSKMNVEQYPVPLECYDALGHVSRERFVELCQELMDTLRAKRE
                     PKSISFATNVCQNCGKTCVYGQGARLCSCLQ"
     exon            449..1039
                     /gene="Pramel57"
                     /gene_synonym="100041354; Gm3286"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..2041
                     /gene="Pramel57"
                     /gene_synonym="100041354; Gm3286"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctctgtgtg cctgtgggac tgagcaactg ctagatcctt ggacttccat tcacatctgc
       61 tgctgaccat tgttggggag ttggactaca gactgtgagt catcatcagt tcccttacta
      121 tacagtgatc accagagcct tcttcctgaa gacctgagag gatgagtggt cagaccccac
      181 ccacactcca gaagctagca aggcagacac tgctgagaga tgaggctttg gccatatcct
      241 ctctggagga gctgccagct gtggtcttcc caccactgtt ccaagaggcc tttgctggca
      301 gactcaacaa gctcataaag gcaatggtgg cagcctggcc tttccacgat ctccctgtgg
      361 ggccattgat aaatatgcat aacctggaaa ccttgcaagc tctgctagat ggagtagaca
      421 tgagactaac aagaaaattt cacccctgga ggccaaaact tcaggttctc gacatgagaa
      481 acgtggacca tgtcttctgg aacatatgga gcgatgcaaa tgacagtgac tctgatgcag
      541 agaccttgga tgaaaagcaa gtagtgaagg cccctcgcag atatgcactg aggcagcgtc
      601 tgaagatcat agttgatctg tcaatcagtt ctcagctcaa tgaacaaaaa gcatatttct
      661 tgaattgggc caagcagaga aaggggtcca taaatttctg ctgtacaaag atgaagatct
      721 gggatgcacc agacgaagtt atcagagaaa tcatgaatgt tttccatcca gagcacatta
      781 cagaattaga actgtatacc gactggactc tgttgcggct ggcacatttt gctccctact
      841 ttgggcagat gaaaaatctt gaaagagtct tcctggcacc actccacaag aatacctccc
      901 ctattatgaa tttgacaagg gactcaaaag tcaagtgtat taaaaaaatt atttctcagt
      961 tttccaaatt caactgtctc caacatgtct tcatgaaacg tgtccatttt ctcagagacc
     1021 acctgcatca gatactaggg tgcctgagga cgcccttgca gaccctctcc atcactcact
     1081 gcctaatttc acagacagac ttggattcct tttcctgctg tcacaacctt tttaagttaa
     1141 aaaatctgga aatcagagga gtgacattat ttgctctcga tcttatgcct ctgagaggtc
     1201 tcctaggaaa actggcaggt actcttgagt ctctggattt tcagtggtgt agcatgaagg
     1261 actcccagct cattgtcctc ttacctgccc tcagtcaatg ctctcagctc aaccagatca
     1321 acttctacag caatgacttc tccatggcca tcctgaagga ccttttgcag cacacagcca
     1381 actggagcaa gatgaatgtg gaacaatacc ctgtccctct ggagtgctat gatgcattgg
     1441 gtcatgtctc cagagaaaga tttgtggaac tttgtcagga gctcatggat accctcaggg
     1501 ccaaaagaga gcctaagagc atatcttttg caacaaatgt ctgccaaaat tgtggcaaga
     1561 cctgtgtcta tggccagggg gcaagacttt gttcctgttt gcagtaaaca tggatacagg
     1621 acttctgaat atgaataaat gacatgcttg ggacacatct ctcatccagg gtgctcagag
     1681 actgtgactt cagacacttc ccatatggtt agaagtaaag agatgtgtag tgactgggac
     1741 cctgaatgct tagatagaaa tgtggactat tccaatagac tgttggacca ggggcatgat
     1801 ggaatcagaa aaacagtttg gcatttatat gtggcttctg cccagagagt atatttagat
     1861 gcttttttgt gtacctataa cctctctctc cagggtcttt gacttttacc aaccttacta
     1921 ccaggttcag ggtcaggatg atagaatagg tccaggattg gaaagacact gttattttat
     1981 gaaggaagca aagttccagg tgaatatggc atgtataaaa taaaagtttt cttgacacat
     2041 c
//
