LOCUS       NM_001122668            2118 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus PRAME like 55 (Pramel55), mRNA.
ACCESSION   NM_001122668 XM_982469 XM_982508 XM_982542 XM_982565
VERSION     NM_001122668.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   3  (bases 1 to 2118)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   4  (bases 1 to 2118)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   5  (bases 1 to 2118)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6  (bases 1 to 2118)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   7  (bases 1 to 2118)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   8  (bases 1 to 2118)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   9  (bases 1 to 2118)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK087741.1 and BB709961.1.
            
            On or before Mar 16, 2008 this sequence version replaced
            XM_982508.1, XM_982542.2, XM_982565.1, XM_982469.2.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-771               AK087741.1         2-772
            772-1916            AK087741.1         774-1918
            1917-2118           BB709961.1         212-413
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2118
                     /gene="Pramel55"
                     /gene_synonym="E330014E10Rik"
                     /note="PRAME like 55"
                     /db_xref="GeneID:665943"
                     /db_xref="MGI:MGI:3615333"
     exon            1..216
                     /gene="Pramel55"
                     /gene_synonym="E330014E10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            217..530
                     /gene="Pramel55"
                     /gene_synonym="E330014E10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..1689
                     /gene="Pramel55"
                     /gene_synonym="E330014E10Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC665943"
                     /protein_id="NP_001116140.1"
                     /db_xref="CCDS:CCDS51565.1"
                     /db_xref="GeneID:665943"
                     /db_xref="MGI:MGI:3615333"
                     /translation="MSGQTPPTLQKLARQTLLRDEALAISSLEELPAVVFPPLFQEAF
                     AGRLNKLIKAMVAAWPFHDLPVGPLINMHNLETLQALLDGVDMRLTRKFHPWRPKLQV
                     LDMRNVDHVFWNIWSDANDSDSDAETLDEKQVVKAPRRYALRQRLKIIVDLSISSQLN
                     EQKAYFLNWAKQRKGSINFCCTKMKIWDAPDEVIREIMNVFHPEHITELELYTDWTLL
                     RLAHFAPYFGQMKNLERVFLAPLHKNTSPIMNLTRDSKVKCIKKIISQFSKFNCLQHV
                     FMKRVHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGV
                     TLFALDLMPLRGLLGKLAGTLESLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSND
                     FSMAILKDLLQHTANWSKMNVEQYPVPLECYDALGHVSRERFVELCQELMDTLRAKRE
                     PKSISFATNVCQNCGKTCVYGQGARLCSCLQ"
     exon            531..1121
                     /gene="Pramel55"
                     /gene_synonym="E330014E10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..2118
                     /gene="Pramel55"
                     /gene_synonym="E330014E10Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttaactgc aatttttgaa ctagaggtgg ggctctctga gatttacccc ttcccatcga
       61 atcaaattgt agcttgtggg tggatctgtg gtgccaaaga ggagaagtga ggaggaaagt
      121 ggctttttgc tccagaggag tcaggaaaac tttcagagtt gtagaaccta aaacttcagc
      181 ctgtccttgc ttgcaatagg aacactgtca cctcaggagc cttcttcctg aagacctgag
      241 aggatgagtg gtcagacccc acccacactc cagaagctag caaggcagac actgctgaga
      301 gatgaggctt tggccatatc ctctctggag gagctgccag ctgtggtctt cccaccactg
      361 ttccaagagg cctttgctgg cagactcaac aagctcataa aggcaatggt ggcagcctgg
      421 cctttccacg atctccctgt ggggccattg ataaatatgc ataacctgga aaccttgcaa
      481 gctctgctag atggagtaga catgagacta acaagaaaat ttcacccctg gaggccaaaa
      541 cttcaggttc tcgacatgag aaacgtggac catgtcttct ggaacatatg gagcgatgca
      601 aatgacagtg actctgatgc agagaccttg gatgaaaagc aagtagtgaa ggcccctcgc
      661 agatatgcac tgaggcagcg tctgaagatc atagttgatc tgtcaatcag ttctcagctc
      721 aatgaacaaa aagcatattt cttgaattgg gccaagcaga gaaaggggtc cataaatttc
      781 tgctgtacaa agatgaagat ctgggatgca ccagacgaag ttatcagaga aatcatgaat
      841 gttttccatc cagagcacat tacagaatta gaactgtata ccgactggac tctgttgcgg
      901 ctggcacatt ttgctcccta ctttgggcag atgaaaaatc ttgaaagagt cttcctggca
      961 ccactccaca agaatacctc ccctattatg aatttgacaa gggactcaaa agtcaagtgt
     1021 attaaaaaaa ttatttctca gttttccaaa ttcaactgtc tccaacatgt cttcatgaaa
     1081 cgtgtccatt ttctcagaga ccacctgcat cagatactag ggtgcctgag gacgcccttg
     1141 cagaccctct ccatcactca ctgcctaatt tcacagacag acttggattc cttttcctgc
     1201 tgtcacaacc tttttaagtt aaaaaatctg gaaatcagag gagtgacatt atttgctctc
     1261 gatcttatgc ctctgagagg tctcctagga aaactggcag gtactcttga gtctctggat
     1321 tttcagtggt gtagcatgaa ggactcccag ctcattgtcc tcttacctgc cctcagtcaa
     1381 tgctctcagc tcaaccagat caacttctac agcaatgact tctccatggc catcctgaag
     1441 gaccttttgc agcacacagc caactggagc aagatgaatg tggaacaata ccctgtccct
     1501 ctggagtgct atgatgcatt gggtcatgtc tccagagaaa gatttgtgga actttgtcag
     1561 gagctcatgg ataccctcag ggccaaaaga gagcctaaga gcatatcttt tgcaacaaat
     1621 gtctgccaaa attgtggcaa gacctgtgtc tatggccagg gggcaagact ttgttcctgt
     1681 ttgcagtaaa catggataca ggacttctga atatgaataa atgacatgcc tgggacacat
     1741 ctctcatcca gggtgctcag agactgtgac ttcagacact tcccatatgg ttagaagtaa
     1801 agagatgggt agtgactggg accctgaatg cttagataga aatgtggact attccaatag
     1861 actgttggac caggggcatg atggaatcag aaaaacagtt tggcatttat atgtggcttc
     1921 tgcccagaca gtatatttag atgctttttt gtgtacctat aacctctctc tccagggtct
     1981 ttgactttta ccaaccttac taccaggttc agggtcagga tgatagaata ggtccaggat
     2041 tggaaagaca ctgttatttt atgaaggaag caaagttcca ggtgaatatg gcatgtataa
     2101 aataaaagtt ttcttgac
//
