LOCUS       NM_001406248            2526 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PRAME like 54 (Pramel54), transcript variant 1, mRNA.
ACCESSION   NM_001406248 XM_030255007
VERSION     NM_001406248.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165367.5 and AC148327.3.
            
            On May 11, 2022 this sequence version replaced XM_030255007.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.182779.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               AC165367.5         54747-54914         c
            169-343             AC165367.5         45425-45599         c
            344-635             AC165367.5         15834-16125         c
            636-792             AC165367.5         15239-15395         c
            793-1107            AC148327.3         147141-147455       c
            1108-1698           AC148327.3         146085-146675       c
            1699-2526           AC148327.3         144434-145261       c
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2526
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /note="PRAME like 54"
                     /db_xref="GeneID:666209"
                     /db_xref="MGI:MGI:3648891"
     exon            1..168
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
     exon            169..343
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
     exon            344..635
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
     exon            636..792
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
     exon            793..1107
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
     CDS             821..2266
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="predicted gene 7982 isoform 1"
                     /protein_id="NP_001393177.1"
                     /db_xref="GeneID:666209"
                     /db_xref="MGI:MGI:3648891"
                     /translation="MNVHTPPTLQKLAIQTLVREEALGMSDLEEMAHGLFPALFKEAI
                     DGRYIKLIKALVIAWPFHCLPVGALMRTTDLETLQAVLDGVDIRRTIGFHPRRKKLQY
                     LDLRNVHHSFWNIWTDSEDSDYSAEILDEKKALQVRPRYALRQRLKVTVDLCIRSCLD
                     EAQTWFLKWAQERKGSLYFCCTKMKIWTLPVKALRHIFHIFDPEHIMELELNTEWTLL
                     ELTHFAPYFGQMRNLCKVFLAPLHKIDFHLPNRTRVTEVKCINKFASQFSKFNCLQHL
                     FMFCVHFLRSQMNQVLGCLMTPLKTFSITYSLISQRDLDSFACCQSLFQLKHLELRGV
                     VLLDLDLMPLRGLLMKVAGTLETLDLQGCRMKDSQLSVLLPAFKQCSQISNINFYNNE
                     FSMPFLKDLLQHTANWSKMNVEQYPAPLECYDEFAQVSVERFVRLCQDLMDTLRAIRQ
                     PKNTSFATDICHTCGERWVFDQVANLCRCWQ"
     exon            1108..1698
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..2526
                     /gene="Pramel54"
                     /gene_synonym="EG666209; Gm7982"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcttgtgggg gctgtggtgg gcggtaactt agggaggggt cagagttcca ggaccatgag
       61 ggaatgccta acatgtcatg aaggtgaatt atgaccatcg gggttcagac ctcagctcaa
      121 ctggatacta gcctgcaatt tcccacagtg acatcctcat tgagtcctgt tccttgtgac
      181 acccttgaag accctctcca ttagttactc cctaatttca cagagagacc tggattcctt
      241 ctcctgctgt cagatcctct ttcagctaaa acatctggga ttgagaggtg tggttttact
      301 ggattttgat cttatggctc tgaggtgtct cctcatgaaa gtgaaccaat caggatggca
      361 gttcatggcc caccccaatt cctggagctg ataaggaaga aggcactgaa gtatgagacc
      421 ttggttgtct ctggagaaat tgctcattga tcttctccca gcactgttcg aggaggcttt
      481 cactgataga ttcactaagg ttgtgaaggc tatggtgtca gcatggcctt ccatctactt
      541 tcctgtggtg ccttgatata caggctccag aaggcaatat ttcaggcttt gctgggtgga
      601 ttatatgtcc tatttacaca tgaatttcaa ctcaggaggt ggaaactttg agtacccgat
      661 atgcagaatg agcatcatga tgtttgggat gtatgggctg gaattgctgg tgcttgctgc
      721 tcaggagaga ccaagatcca gaagtaggta gaagagcctg agctggaagc tgtaccaaat
      781 cccgctgtga aggatccttc tgattggaga ccttaagaag atgaatgttc ataccccacc
      841 cacactccag aagctggcaa ttcagactct ggtgagagag gaggctctag gcatgtctga
      901 tctggaggag atggcccatg gactcttccc agcacttttc aaggaggcca ttgatggcag
      961 atatatcaag ctcataaagg cattggtgat agcctggcct ttccactgtc tccctgtggg
     1021 ggcattgatg aggactactg acctggaaac attgcaggct gtgctagatg gagtagacat
     1081 tcgtcgaacc atagggtttc accccaggag gaaaaaacta cagtatctcg acctgaggaa
     1141 tgtgcaccat agcttctgga acatatggac tgattcagag gacagtgact attcagcaga
     1201 gatcttggat gaaaagaaag ccctgcaggt ccgtcccaga tatgcactga ggcagcgtct
     1261 gaaggtcaca gttgacctgt gcatcaggtc ctgccttgat gaagcacaaa catggttctt
     1321 gaagtgggcc caggagagaa agggctccct atatttctgc tgtacaaaga tgaaaatctg
     1381 gactctgcca gtaaaagctc tcagacatat cttccacatt tttgatccag agcacatcat
     1441 ggagttagaa ctaaacactg aatggactct gttagagttg acacattttg ccccctattt
     1501 tgggcagatg agaaatcttt gcaaagtatt cctggcaccc ctccacaaaa tcgacttcca
     1561 tttacccaat agaacaagag tcaccgaagt caagtgtatc aacaagtttg cttctcagtt
     1621 ctccaaattc aactgtctgc agcatctttt catgttctgc gtccattttc tcagatccca
     1681 gatgaatcag gtcctagggt gcttgatgac acccttgaag accttctcca ttacttactc
     1741 cctgatttca cagagagatt tggattcctt tgcctgctgt cagagcctct ttcagctaaa
     1801 acatctggaa ttgagaggtg tggtcttact ggatttggat cttatgcctc tgagaggtct
     1861 cctcatgaaa gtggcaggca ctcttgagac tctggatttg caggggtgta ggatgaagga
     1921 ctcccagctc agtgtcctcc tacctgcatt caaacaatgc tctcagatct ccaatatcaa
     1981 cttctacaac aatgaattct ccatgccctt cctgaaggac cttttgcagc acacagccaa
     2041 ctggagcaag atgaatgtgg aacaataccc tgcccctctg gagtgctatg atgaatttgc
     2101 tcaagtctct gtagaaagat ttgtgcgact ttgtcaggat ctcatggata cactgagggc
     2161 aataaggcag cccaagaaca cctcctttgc tacagatatc tgccacacat gtggggagcg
     2221 ctgggtcttt gaccaggtgg ccaacctttg tcgttgctgg cagtaaaatg ggaacattct
     2281 ggatttgaat aaaaataagg tttgggacac atgtcttacc aaaaaaaatg tattttccat
     2341 cttcagttgt aataaaaaga acagagaaaa aaatctcact cagcctagtc attatacccc
     2401 ctttctgtaa actatcaata aaataatttg ttactctgta tttattgaaa acttagaaca
     2461 tgatttcttt gtttaaacat cattgttatt gtctgaattg aataaagcat ctaaattaaa
     2521 agacta
//
