LOCUS       NM_001406260            2537 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PRAME like 53 (Pramel53), transcript variant 1, mRNA.
ACCESSION   NM_001406260 XM_030255005
VERSION     NM_001406260.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC133196.6 and AC124754.5.
            
            On May 11, 2022 this sequence version replaced XM_030255005.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.182779.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               AC133196.6         20300-20478         c
            180-354             AC133196.6         10978-11152         c
            355-646             AC124754.5         154249-154540
            647-803             AC124754.5         154979-155135
            804-1118            AC124754.5         172848-173162
            1119-1709           AC124754.5         173628-174218
            1710-2537           AC124754.5         175042-175869
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2537
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /note="PRAME like 53"
                     /db_xref="GeneID:622744"
                     /db_xref="MGI:MGI:3647817"
     exon            1..179
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
     exon            180..354
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
     exon            355..646
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
     exon            647..803
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
     exon            804..1118
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
     CDS             832..2277
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="predicted gene 6351 isoform 1"
                     /protein_id="NP_001393189.1"
                     /db_xref="GeneID:622744"
                     /db_xref="MGI:MGI:3647817"
                     /translation="MNVHTPPTLQKLAIQTLVREEALGMSDLEEMAHGLFPALFKEAI
                     DGRYIKLIKALVIAWPFHCLPVGALMRTTDLETLQAVLDGVDIRRTIGFHPRRKKLQY
                     LDLRNVHHSFWNIWTDSEDSDYSAEILDEKKALQVRPRYALRQRLKVTVDLCIRSCLD
                     EAQTWFLKWAQERKGSLYFCCTKMKIWTLPVKALRHIFHIFDPEHIMELELNTEWTLL
                     ELTHFAPYFGQMRNLCKVFLAPLHKIDFHLPNRTRVTEVKCINKFASQFSKFNCLQHL
                     FMFCVHFLRSQMNQVLGCLMTPLKTFSITYSLISQRDLDSFACCQSLFQLKHLELRGV
                     VLLDLDLMPLRGLLMKVAGTLETLDLQGCRMKDSQLSVLLPAFKQCSQISNINFYNNE
                     FSMPFLKDLLQHTANWSKMNVEQYPAPLECYDEFAQVSVERFVRLCQDLMDTLRAIRQ
                     PKNTSFATDICHTCGERWVFDQVANLCRCWQ"
     exon            1119..1709
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
     exon            1710..2537
                     /gene="Pramel53"
                     /gene_synonym="EG622744; Gm6351"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaccatgctt ctcttgtggg ggctgtggtg ggcggtaact tagggagggg tcagagttcc
       61 aggaccatga gggaatgcct aacatgtcat gaaggtgaat tatgaccatc ggggttcaga
      121 cctcagctca actggatact agcctgcaat ttcccacagt gacatcctca ttgagtcctg
      181 ttccttgtga cacccttgaa gaccctctcc attagttact ccctaatttc acagagagac
      241 ctggattcct tctcctgctg tcagatcctc tttcagctaa aacatctggg attgagaggt
      301 gtggttttac tggattttga tcttatggct ctgaggtgtc tcctcatgaa agtgaaccaa
      361 tcaggatggc agttcatggc ccaccccaat tcctggagct gataaggaag aaggcactga
      421 agtatgagac cttggttgtc tctggagaaa ttgctcattg atcttctccc agcactgttc
      481 gaggaggctt tcactgatag attcactaag gttgtgaagg ctatggtgtc agcatggcct
      541 tccatctact ttcctgtggt gccttgatat acaggctcca gaaggcaata tttcaggctt
      601 tgctgggtgg attatatgtc ctatttacac atgaatttca actcaggagg tggaaacttt
      661 gagtacccga tatgcagaat gagcatcatg atgtttggga tgtatgggct ggaattgctg
      721 gtgcttgctg ctcaggagag accaagatcc agaagtaggt agaagagcct gagctggaag
      781 ctgtaccaaa tcccgctgtg aaggatcctt ctgattggag accttaagaa gatgaatgtt
      841 cataccccac ccacactcca gaagctggca attcagactc tggtgagaga ggaggctcta
      901 ggcatgtctg atctggagga gatggcccat ggactcttcc cagcactttt caaggaggcc
      961 attgatggca gatatatcaa gctcataaag gcattggtga tagcctggcc tttccactgt
     1021 ctccctgtgg gggcattgat gaggactact gacctggaaa cattgcaggc tgtgctagat
     1081 ggagtagaca ttcgtcgaac catagggttt caccccagga ggaaaaaact acagtatctc
     1141 gacctgagga atgtgcacca tagcttctgg aacatatgga ctgattcaga ggacagtgac
     1201 tattcagcag agatcttgga tgaaaagaaa gccctgcagg tccgtcccag atatgcactg
     1261 aggcagcgtc tgaaggtcac agttgacctg tgcatcaggt cctgccttga tgaagcacaa
     1321 acatggttct tgaagtgggc ccaggagaga aagggctccc tatatttctg ctgtacaaag
     1381 atgaaaatct ggactctgcc agtaaaagct ctcagacata tcttccacat ttttgatcca
     1441 gagcacatca tggagttaga actaaacact gaatggactc tgttagagtt gacacatttt
     1501 gccccctatt ttgggcagat gagaaatctt tgcaaagtat tcctggcacc cctccacaaa
     1561 atcgacttcc atttacccaa tagaacaaga gtcaccgaag tcaagtgtat caacaagttt
     1621 gcttctcagt tctccaaatt caactgtctg cagcatcttt tcatgttctg cgtccatttt
     1681 ctcagatccc agatgaatca ggtcctaggg tgcttgatga cacccttgaa gaccttctcc
     1741 attacttact ccctgatttc acagagagat ttggattcct ttgcctgctg tcagagcctc
     1801 tttcagctaa aacatctgga attgagaggt gtggtcttac tggatttgga tcttatgcct
     1861 ctgagaggtc tcctcatgaa agtggcaggc actcttgaga ctctggattt gcaggggtgt
     1921 aggatgaagg actcccagct cagtgtcctc ctacctgcat tcaaacaatg ctctcagatc
     1981 tccaatatca acttctacaa caatgaattc tccatgccct tcctgaagga ccttttgcag
     2041 cacacagcca actggagcaa gatgaatgtg gaacaatacc ctgcccctct ggagtgctat
     2101 gatgaatttg ctcaagtctc tgtagaaaga tttgtgcgac tttgtcagga tctcatggat
     2161 acactgaggg caataaggca gcccaagaac acctcctttg ctacagatat ctgccacaca
     2221 tgtggggagc gctgggtctt tgaccaggtg gccaaccttt gtcgttgctg gcagtaaaat
     2281 gggaacattc tggatttgaa taaaaataag gtttgggaca catgtcttac caaaaaaaat
     2341 gtattttcca tcttcagttg taataaaaag aacagagaaa aaaatctcac tcagcctagt
     2401 cattataccc cctttctgta aactatcaat aaaataattt gttactctgt atttattgaa
     2461 aacttagaac atgatttctt tgtttaaaca tcattgttat tgtctgaatt gaataaagca
     2521 tctaaattaa aagacta
//
