LOCUS       NM_177187               2501 bp    mRNA    linear   ROD 15-OCT-2021
DEFINITION  Mus musculus PRAME like 48 (Pramel48), transcript variant 1, mRNA.
ACCESSION   NM_177187 XM_001005035
VERSION     NM_177187.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Ko MS, Kitchen JR, Wang X, Threat TA, Wang X, Hasegawa A, Sun T,
            Grahovac MJ, Kargul GJ, Lim MK, Cui Y, Sano Y, Tanaka T, Liang Y,
            Mason S, Paonessa PD, Sauls AD, DePalma GE, Sharara R, Rowe LB,
            Eppig J, Morrell C and Doi H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK054417.1, BC145804.1 and BC094905.1.
            
            On Mar 14, 2008 this sequence version replaced NM_177187.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 both encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK054417.1, BC145804.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-277               AK054417.1         1-277
            278-1342            BC145804.1         224-1288
            1343-2131           AK054417.1         1343-2131
            2132-2501           BC094905.1         2029-2398
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2501
                     /gene="Pramel48"
                     /gene_synonym="D5Ertd577e; E330023J07Rik"
                     /note="PRAME like 48"
                     /db_xref="GeneID:320549"
                     /db_xref="MGI:MGI:1261918"
     exon            1..96
                     /gene="Pramel48"
                     /gene_synonym="D5Ertd577e; E330023J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            97..410
                     /gene="Pramel48"
                     /gene_synonym="D5Ertd577e; E330023J07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1569
                     /gene="Pramel48"
                     /gene_synonym="D5Ertd577e; E330023J07Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC320549"
                     /protein_id="NP_796161.3"
                     /db_xref="CCDS:CCDS51561.1"
                     /db_xref="GeneID:320549"
                     /db_xref="MGI:MGI:1261918"
                     /translation="MSGQTPPTLQKLARQTLLRDEALAISSLEELPAVVFPPLFQEAF
                     AGRLNKLIKAMVAAWPFHDLPVGPLINMHNLETLQALLDGVDMRLTRKFHPWRPKLQV
                     LDMRNVDHVFWNIWSDANDSDSDAETLDEKQVVKAPRRYALRQRLKIIVDLSISSQLN
                     EQKAYFLNWAKQRKGSINFCCTKMKIWDAPDEVIREIMNVFHPEHITELELYTDWTLL
                     RLAHFAPYIGQMKNLERVFLAPLHKNTSPIMNLTRDSKVKCIKKIISQFSKFNCLQHV
                     FMKRVHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGV
                     TLFALDLMPLRGLLGKLAGTLESLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSND
                     FSMAILKDLLQHTANWSKMNVEQYPVPLECYDALGHVSRERFVELCQELMDTLRAKRE
                     PKSISFATNVCQNCGKTCVYGQGARLCSCLQ"
     exon            411..1001
                     /gene="Pramel48"
                     /gene_synonym="D5Ertd577e; E330023J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1002..2487
                     /gene="Pramel48"
                     /gene_synonym="D5Ertd577e; E330023J07Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctttttgc tccagaggag tcaggaaaac tttcagagtt gtagaaccta aaacttcagc
       61 ctgtccttgc ttgcagtagg aacactgtca cctcaggagc cttcttcctg aagacctgag
      121 aggatgagtg gtcagacccc acccacactc cagaagctag caaggcagac actgctgaga
      181 gatgaggctt tggccatatc ctctctggag gagctgccag ctgtggtctt cccaccactg
      241 ttccaagagg cctttgctgg cagactcaac aagctcataa aggcaatggt ggcagcctgg
      301 cctttccacg atctccctgt ggggccattg ataaatatgc ataacctgga aaccttgcaa
      361 gctctgctag atggagtaga catgagacta acaagaaaat ttcacccctg gaggccaaaa
      421 cttcaggttc tcgacatgag aaacgtggac catgtcttct ggaacatatg gagcgatgca
      481 aatgacagtg actctgatgc agagaccttg gatgaaaagc aagtagtgaa ggcccctcgc
      541 agatatgcac tgaggcagcg tctgaagatc atagttgatc tgtcaatcag ttctcagctc
      601 aatgaacaaa aagcatattt cttgaattgg gccaagcaga gaaaggggtc cataaatttc
      661 tgctgtacaa agatgaagat ctgggatgca ccagacgaag ttatcagaga aatcatgaat
      721 gttttccatc cagagcacat tacagaatta gaactgtata ccgactggac tctgttgcgg
      781 ctggcacatt ttgctcccta cattgggcag atgaaaaatc ttgaaagagt cttcctggca
      841 ccactccaca agaatacctc ccctattatg aatttgacaa gggactcaaa agtcaagtgt
      901 attaaaaaaa ttatttctca gttttccaaa ttcaactgtc tccaacatgt cttcatgaaa
      961 cgtgtccatt ttctcagaga ccacctgcat cagatactag ggtgcctgag gacgcccttg
     1021 cagaccctct ccatcactca ctgcctaatt tcacagacag acttggattc cttttcctgc
     1081 tgtcacaacc tttttaagtt aaaaaatctg gaaatcagag gagtgacatt atttgctctc
     1141 gatcttatgc ctctgagagg tctcctagga aaactggcag gtactcttga gtctctggat
     1201 tttcagtggt gtagcatgaa ggactcccag ctcattgtcc tcttacctgc cctcagtcaa
     1261 tgctctcagc tcaaccagat caacttctac agcaatgact tctccatggc catcctgaag
     1321 gaccttttgc agcacacagc caactggagc aagatgaatg tggaacaata ccctgtccct
     1381 ctggagtgct atgatgcatt gggtcatgtc tccagagaaa gatttgtgga actttgtcag
     1441 gagctcatgg ataccctcag ggccaaaaga gagcctaaga gcatatcttt tgcaacaaat
     1501 gtctgccaaa attgtggcaa gacctgtgtc tatggccagg gggcaagact ttgttcctgt
     1561 ttgcagtaaa catggataca ggacttctga atatgaataa atgacatgct tgggacacat
     1621 ctctcatcca gggtgctcag agactgtgac ttcagacact tcccatatgg ttagaagtaa
     1681 agagatgtgt agtgactggg accctgaatg cttagataga aatgtggact attccaatag
     1741 actgttggac cagggacatg atggaatcag aaaaacagtt tggcatttat atgtggcttc
     1801 tgcccagaca gtatatttag atgctttttt gtgtacctat aacctctctc tccagggtct
     1861 ttgactttta ccaaccttac taccaggttc agggtcagga tgatagaata ggtccaggat
     1921 tggaaagaca ctgttatttt atgaaggaag caaagttcca ggtgaatatg gcatgtataa
     1981 aataaaagtt ttcttgacac atctttccct ggtctcttgc ctgggctaca tgtataacac
     2041 ttttgtgtgg ctgatcagtt atgtgcacaa aacatttaca ttaatgtgag gaagataaac
     2101 acaaatcttg tgaagggggg attaagagga tcacagatgg ttaatatcca gtatgttgag
     2161 accacaaggc accttggacc catcaaagat gcctaaaggt aggaagacaa catagagcaa
     2221 agtaaacagg ctttccattc tagctttaaa tcctgatctt tttgtcatgc cttaatgagc
     2281 ttactaacca gaacctctat atacagtctt tatgccacat gtctctagag ctctattcct
     2341 atggagtccc aaactctatg aagtaaccat agtgtataaa aaggtgccaa caattatgca
     2401 ggtacctttg ctacataaag tatttacttt caaaaagact tgtattttaa atcttcagtt
     2461 gtaataaaaa taaaagaaac aaaaatcaaa aaaaaaaaaa a
//
